data_8RW4 # _model_server_result.job_id Xtzcy1NN9YpCWCh3e7U2EQ _model_server_result.datetime_utc '2025-01-10 06:17:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rw4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 8RW4 # _exptl.entry_id 8RW4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 372.379 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-[(~{E})-(3,4-dimethoxyphenyl)diazenyl]-1,3-diethyl-7~{H}-purine-2,6-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RW4 _cell.length_a 39.494 _cell.length_b 179.587 _cell.length_c 139.991 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RW4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc3 Y NA NA . A NA 1224 1_555 Z O HOH . A HOH 1349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 Y NA NA . A NA 1224 1_555 Z O HOH . A HOH 1353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc5 Y NA NA . A NA 1224 1_555 Z O HOH . A HOH 1355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? # _chem_comp.formula 'C17 H20 N6 O4' _chem_comp.formula_weight 372.379 _chem_comp.id A1H3L _chem_comp.mon_nstd_flag . _chem_comp.name 8-[(~{E})-(3,4-dimethoxyphenyl)diazenyl]-1,3-diethyl-7~{H}-purine-2,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ASPARTATE SEMIALDEHYDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 O2 A1H3L sing 1 n n O2 C10 A1H3L sing 2 n n O1 C11 A1H3L sing 3 n n O1 C12 A1H3L sing 4 n n C10 C9 A1H3L doub 5 n y C10 C11 A1H3L sing 6 n y C9 C8 A1H3L sing 7 n y C11 C13 A1H3L doub 8 n y C13 C14 A1H3L sing 9 n y C8 C14 A1H3L doub 10 n y C8 N5 A1H3L sing 11 n n N5 N4 A1H3L doub 12 n n C3 C4 A1H3L sing 13 n n C3 N1 A1H3L sing 14 n n N3 C7 A1H3L doub 15 n y N3 C5 A1H3L sing 16 n y N4 C7 A1H3L sing 17 n n C7 N2 A1H3L sing 18 n y N1 C5 A1H3L sing 19 n n N1 C2 A1H3L sing 20 n n C5 C6 A1H3L doub 21 n y O C2 A1H3L doub 22 n n N2 C6 A1H3L sing 23 n y C2 N A1H3L sing 24 n n C6 C16 A1H3L sing 25 n n N C16 A1H3L sing 26 n n N C1 A1H3L sing 27 n n C16 O3 A1H3L doub 28 n n C C1 A1H3L sing 29 n n C H1 A1H3L sing 30 n n C H2 A1H3L sing 31 n n C H3 A1H3L sing 32 n n C1 H4 A1H3L sing 33 n n C1 H5 A1H3L sing 34 n n C12 H6 A1H3L sing 35 n n C12 H7 A1H3L sing 36 n n C12 H8 A1H3L sing 37 n n C13 H9 A1H3L sing 38 n n C14 H10 A1H3L sing 39 n n C15 H11 A1H3L sing 40 n n C15 H12 A1H3L sing 41 n n C15 H13 A1H3L sing 42 n n C3 H14 A1H3L sing 43 n n C3 H15 A1H3L sing 44 n n C4 H16 A1H3L sing 45 n n C4 H17 A1H3L sing 46 n n C4 H18 A1H3L sing 47 n n C9 H19 A1H3L sing 48 n n N2 H20 A1H3L sing 49 n n # _atom_sites.entry_id 8RW4 _atom_sites.fract_transf_matrix[1][1] 0.02532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1H3L A 1 1201 1201 A1H3L AS2 . C 3 CLR A 1 1202 1202 CLR CLR . D 3 CLR A 1 1203 1203 CLR CLR . E 3 CLR A 1 1204 1204 CLR CLR . F 4 OLA A 1 1205 1205 OLA OLA . G 4 OLA A 1 1206 1206 OLA OLA . H 4 OLA A 1 1207 1207 OLA OLA . I 4 OLA A 1 1208 1208 OLA OLA . J 4 OLA A 1 1209 1209 OLA OLA . K 4 OLA A 1 1210 1210 OLA OLA . L 4 OLA A 1 1211 1211 OLA OLA . M 4 OLA A 1 1212 1212 OLA OLA . N 4 OLA A 1 1213 1213 OLA OLA . O 4 OLA A 1 1214 1214 OLA OLA . P 4 OLA A 1 1215 1215 OLA OLA . Q 4 OLA A 1 1216 1216 OLA OLA . R 4 OLA A 1 1217 1217 OLA OLA . S 4 OLA A 1 1218 1218 OLA OLA . T 4 OLA A 1 1219 1219 OLA OLA . U 4 OLA A 1 1220 1220 OLA OLA . V 4 OLA A 1 1221 1221 OLA OLA . W 4 OLA A 1 1222 1222 OLA OLA . X 4 OLA A 1 1223 1223 OLA OLA . Y 5 NA A 1 1224 1 NA NA . Z 6 HOH A 1 1301 73 HOH HOH . Z 6 HOH A 2 1302 54 HOH HOH . Z 6 HOH A 3 1303 50 HOH HOH . Z 6 HOH A 4 1304 51 HOH HOH . Z 6 HOH A 5 1305 31 HOH HOH . Z 6 HOH A 6 1306 53 HOH HOH . Z 6 HOH A 7 1307 16 HOH HOH . Z 6 HOH A 8 1308 17 HOH HOH . Z 6 HOH A 9 1309 52 HOH HOH . Z 6 HOH A 10 1310 4 HOH HOH . Z 6 HOH A 11 1311 23 HOH HOH . Z 6 HOH A 12 1312 44 HOH HOH . Z 6 HOH A 13 1313 13 HOH HOH . Z 6 HOH A 14 1314 33 HOH HOH . Z 6 HOH A 15 1315 45 HOH HOH . Z 6 HOH A 16 1316 8 HOH HOH . Z 6 HOH A 17 1317 12 HOH HOH . Z 6 HOH A 18 1318 10 HOH HOH . Z 6 HOH A 19 1319 11 HOH HOH . Z 6 HOH A 20 1320 67 HOH HOH . Z 6 HOH A 21 1321 37 HOH HOH . Z 6 HOH A 22 1322 35 HOH HOH . Z 6 HOH A 23 1323 36 HOH HOH . Z 6 HOH A 24 1324 66 HOH HOH . Z 6 HOH A 25 1325 14 HOH HOH . Z 6 HOH A 26 1326 1 HOH HOH . Z 6 HOH A 27 1327 69 HOH HOH . Z 6 HOH A 28 1328 41 HOH HOH . Z 6 HOH A 29 1329 28 HOH HOH . Z 6 HOH A 30 1330 68 HOH HOH . Z 6 HOH A 31 1331 47 HOH HOH . Z 6 HOH A 32 1332 2 HOH HOH . Z 6 HOH A 33 1333 19 HOH HOH . Z 6 HOH A 34 1334 65 HOH HOH . Z 6 HOH A 35 1335 22 HOH HOH . Z 6 HOH A 36 1336 38 HOH HOH . Z 6 HOH A 37 1337 39 HOH HOH . Z 6 HOH A 38 1338 29 HOH HOH . Z 6 HOH A 39 1339 32 HOH HOH . Z 6 HOH A 40 1340 55 HOH HOH . Z 6 HOH A 41 1341 24 HOH HOH . Z 6 HOH A 42 1342 5 HOH HOH . Z 6 HOH A 43 1343 63 HOH HOH . Z 6 HOH A 44 1344 48 HOH HOH . Z 6 HOH A 45 1345 40 HOH HOH . Z 6 HOH A 46 1346 34 HOH HOH . Z 6 HOH A 47 1347 30 HOH HOH . Z 6 HOH A 48 1348 18 HOH HOH . Z 6 HOH A 49 1349 56 HOH HOH . Z 6 HOH A 50 1350 9 HOH HOH . Z 6 HOH A 51 1351 42 HOH HOH . Z 6 HOH A 52 1352 46 HOH HOH . Z 6 HOH A 53 1353 58 HOH HOH . Z 6 HOH A 54 1354 64 HOH HOH . Z 6 HOH A 55 1355 6 HOH HOH . Z 6 HOH A 56 1356 3 HOH HOH . Z 6 HOH A 57 1357 7 HOH HOH . Z 6 HOH A 58 1358 70 HOH HOH . Z 6 HOH A 59 1359 60 HOH HOH . Z 6 HOH A 60 1360 27 HOH HOH . Z 6 HOH A 61 1361 20 HOH HOH . Z 6 HOH A 62 1362 15 HOH HOH . Z 6 HOH A 63 1363 71 HOH HOH . Z 6 HOH A 64 1364 25 HOH HOH . Z 6 HOH A 65 1365 49 HOH HOH . Z 6 HOH A 66 1366 43 HOH HOH . Z 6 HOH A 67 1367 57 HOH HOH . Z 6 HOH A 68 1368 61 HOH HOH . Z 6 HOH A 69 1369 26 HOH HOH . Z 6 HOH A 70 1370 62 HOH HOH . Z 6 HOH A 71 1371 72 HOH HOH . Z 6 HOH A 72 1372 74 HOH HOH . Z 6 HOH A 73 1373 21 HOH HOH . Z 6 HOH A 74 1374 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O A1H3L . . . B 2 -23.014 3.322 17.521 1 37.29 ? O A1H3L 1201 A 1 HETATM 2 C C A1H3L . . . B 2 -20.144 2.126 18.824 1 32.9 ? C A1H3L 1201 A 1 HETATM 3 N N A1H3L . . . B 2 -21.193 4.344 18.436 1 28.31 ? N A1H3L 1201 A 1 HETATM 4 C C1 A1H3L . . . B 2 -21.006 3.222 19.373 1 26.22 ? C1 A1H3L 1201 A 1 HETATM 5 C C10 A1H3L . . . B 2 -21.989 13.471 13.947 1 51.72 ? C10 A1H3L 1201 A 1 HETATM 6 C C11 A1H3L . . . B 2 -20.927 14.304 14.341 1 51.19 ? C11 A1H3L 1201 A 1 HETATM 7 C C12 A1H3L . . . B 2 -19.991 16.5 14.351 1 67.02 ? C12 A1H3L 1201 A 1 HETATM 8 C C13 A1H3L . . . B 2 -19.891 13.789 15.104 1 46.12 ? C13 A1H3L 1201 A 1 HETATM 9 C C14 A1H3L . . . B 2 -19.915 12.459 15.486 1 38.5 ? C14 A1H3L 1201 A 1 HETATM 10 C C15 A1H3L . . . B 2 -24.099 13.276 12.851 1 46.6 ? C15 A1H3L 1201 A 1 HETATM 11 C C16 A1H3L . . . B 2 -20.296 5.412 18.544 1 21.61 ? C16 A1H3L 1201 A 1 HETATM 12 C C2 A1H3L . . . B 2 -22.292 4.301 17.595 1 29.9 ? C2 A1H3L 1201 A 1 HETATM 13 C C3 A1H3L . . . B 2 -23.669 5.435 15.919 1 28.8 ? C3 A1H3L 1201 A 1 HETATM 14 C C4 A1H3L . . . B 2 -24.949 5.856 16.595 1 36.17 ? C4 A1H3L 1201 A 1 HETATM 15 C C5 A1H3L . . . B 2 -21.715 6.568 16.906 1 26.55 ? C5 A1H3L 1201 A 1 HETATM 16 C C6 A1H3L . . . B 2 -20.625 6.536 17.739 1 27.09 ? C6 A1H3L 1201 A 1 HETATM 17 C C7 A1H3L . . . B 2 -20.789 8.456 16.694 1 30.99 ? C7 A1H3L 1201 A 1 HETATM 18 C C8 A1H3L . . . B 2 -20.968 11.634 15.106 1 42.27 ? C8 A1H3L 1201 A 1 HETATM 19 C C9 A1H3L . . . B 2 -21.997 12.142 14.32 1 39.79 ? C9 A1H3L 1201 A 1 HETATM 20 N N1 A1H3L . . . B 2 -22.52 5.436 16.843 1 27.7 ? N1 A1H3L 1201 A 1 HETATM 21 N N2 A1H3L . . . B 2 -20.036 7.766 17.59 1 23.41 ? N2 A1H3L 1201 A 1 HETATM 22 N N3 A1H3L . . . B 2 -21.834 7.758 16.253 1 24.79 ? N3 A1H3L 1201 A 1 HETATM 23 N N4 A1H3L . . . B 2 -20.409 9.757 16.324 1 38.29 ? N4 A1H3L 1201 A 1 HETATM 24 N N5 A1H3L . . . B 2 -21.213 10.281 15.499 1 38.92 ? N5 A1H3L 1201 A 1 HETATM 25 O O1 A1H3L . . . B 2 -21.021 15.606 13.935 1 52.37 ? O1 A1H3L 1201 A 1 HETATM 26 O O2 A1H3L . . . B 2 -22.982 14.077 13.23 1 43.9 ? O2 A1H3L 1201 A 1 HETATM 27 O O3 A1H3L . . . B 2 -19.32 5.311 19.277 1 33.55 ? O3 A1H3L 1201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #