data_8RWH # _model_server_result.job_id M0kN4Njoos6tX-awlT_HeQ _model_server_result.datetime_utc '2025-01-10 06:13:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rwh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":1229}' # _entry.id 8RWH # _exptl.entry_id 8RWH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RWH _cell.length_a 40.55 _cell.length_b 182.54 _cell.length_c 143.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RWH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id DA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 DA NA NA . A NA 1229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 DA NA NA . A NA 1229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc3 DA NA NA . A NA 1229 1_555 EA O HOH . A HOH 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc4 DA NA NA . A NA 1229 1_555 EA O HOH . A HOH 1317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc5 DA NA NA . A NA 1229 1_555 EA O HOH . A HOH 1325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8RWH _atom_sites.fract_transf_matrix[1][1] 0.024661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1H3I A 1 1201 1201 A1H3I SS2 . C 3 CLR A 1 1202 1202 CLR CLR . D 3 CLR A 1 1203 1203 CLR CLR . E 3 CLR A 1 1204 1204 CLR CLR . F 4 OLA A 1 1205 1205 OLA OLA . G 4 OLA A 1 1206 1206 OLA OLA . H 4 OLA A 1 1207 1207 OLA OLA . I 4 OLA A 1 1208 1208 OLA OLA . J 4 OLA A 1 1209 1209 OLA OLA . K 4 OLA A 1 1210 1210 OLA OLA . L 4 OLA A 1 1211 1211 OLA OLA . M 4 OLA A 1 1212 1212 OLA OLA . N 4 OLA A 1 1213 1213 OLA OLA . O 4 OLA A 1 1214 1214 OLA OLA . P 4 OLA A 1 1215 1215 OLA OLA . Q 4 OLA A 1 1216 1216 OLA OLA . R 4 OLA A 1 1217 1217 OLA OLA . S 4 OLA A 1 1218 1218 OLA OLA . T 4 OLA A 1 1219 1219 OLA OLA . U 4 OLA A 1 1220 1220 OLA OLA . V 4 OLA A 1 1221 1221 OLA OLA . W 4 OLA A 1 1222 1222 OLA OLA . X 5 OLB A 1 1223 1223 OLB OLB . Y 6 OLC A 1 1224 1224 OLC OLC . Z 4 OLA A 1 1225 1225 OLA OLA . AA 4 OLA A 1 1226 1226 OLA OLA . BA 4 OLA A 1 1227 1227 OLA OLA . CA 4 OLA A 1 1228 1228 OLA OLA . DA 7 NA A 1 1229 1 NA NA . EA 8 HOH A 1 1301 21 HOH HOH . EA 8 HOH A 2 1302 18 HOH HOH . EA 8 HOH A 3 1303 14 HOH HOH . EA 8 HOH A 4 1304 20 HOH HOH . EA 8 HOH A 5 1305 16 HOH HOH . EA 8 HOH A 6 1306 11 HOH HOH . EA 8 HOH A 7 1307 2 HOH HOH . EA 8 HOH A 8 1308 24 HOH HOH . EA 8 HOH A 9 1309 23 HOH HOH . EA 8 HOH A 10 1310 6 HOH HOH . EA 8 HOH A 11 1311 5 HOH HOH . EA 8 HOH A 12 1312 22 HOH HOH . EA 8 HOH A 13 1313 17 HOH HOH . EA 8 HOH A 14 1314 10 HOH HOH . EA 8 HOH A 15 1315 9 HOH HOH . EA 8 HOH A 16 1316 1 HOH HOH . EA 8 HOH A 17 1317 26 HOH HOH . EA 8 HOH A 18 1318 19 HOH HOH . EA 8 HOH A 19 1319 3 HOH HOH . EA 8 HOH A 20 1320 12 HOH HOH . EA 8 HOH A 21 1321 7 HOH HOH . EA 8 HOH A 22 1322 8 HOH HOH . EA 8 HOH A 23 1323 25 HOH HOH . EA 8 HOH A 24 1324 4 HOH HOH . EA 8 HOH A 25 1325 15 HOH HOH . EA 8 HOH A 26 1326 13 HOH HOH . EA 8 HOH A 27 1327 27 HOH HOH . EA 8 HOH A 28 1328 28 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id DA _atom_site.label_entity_id 7 _atom_site.Cartn_x -23.896 _atom_site.Cartn_y -9.132 _atom_site.Cartn_z 16.59 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1229 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #