data_8RWI # _model_server_result.job_id M4HdgXz9HAS9wxBqLnlYnQ _model_server_result.datetime_utc '2025-01-10 05:40:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rwi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 8RWI # _exptl.entry_id 8RWI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.376 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-[(~{E})-2-[3,4-bis(oxidanyl)phenyl]ethenyl]-1,3-diethyl-7-methyl-purine-2,6-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RWI _cell.length_a 40.55 _cell.length_b 182.54 _cell.length_c 143.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RWI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 W NA NA . A NA 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 W NA NA . A NA 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? metalc ? metalc3 W NA NA . A NA 1222 1_555 X O HOH . A HOH 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? metalc ? metalc4 W NA NA . A NA 1222 1_555 X O HOH . A HOH 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc5 W NA NA . A NA 1222 1_555 X O HOH . A HOH 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? # _chem_comp.formula 'C18 H20 N4 O4' _chem_comp.formula_weight 356.376 _chem_comp.id A1H3I _chem_comp.mon_nstd_flag . _chem_comp.name 8-[(~{E})-2-[3,4-bis(oxidanyl)phenyl]ethenyl]-1,3-diethyl-7-methyl-purine-2,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-PHENYLETHANOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C13 A1H3I sing 1 n n C13 C14 A1H3I doub 2 n y C13 C12 A1H3I sing 3 n y O1 C14 A1H3I sing 4 n n C14 C16 A1H3I sing 5 n y C12 C11 A1H3I doub 6 n y C16 C17 A1H3I doub 7 n y C11 C17 A1H3I sing 8 n y C11 C10 A1H3I sing 9 n n C4 C3 A1H3I sing 10 n n C10 C9 A1H3I doub 11 e n C9 C8 A1H3I sing 12 n n N3 C8 A1H3I doub 13 n y N3 C5 A1H3I sing 14 n y C3 N1 A1H3I sing 15 n n C8 N2 A1H3I sing 16 n y N1 C5 A1H3I sing 17 n n N1 C2 A1H3I sing 18 n n C5 C6 A1H3I doub 19 n y O C2 A1H3I doub 20 n n C2 N A1H3I sing 21 n n N2 C6 A1H3I sing 22 n y N2 C7 A1H3I sing 23 n n C6 C19 A1H3I sing 24 n n N C19 A1H3I sing 25 n n N C1 A1H3I sing 26 n n C19 O3 A1H3I doub 27 n n C C1 A1H3I sing 28 n n O1 H1 A1H3I sing 29 n n C1 H2 A1H3I sing 30 n n C1 H3 A1H3I sing 31 n n C3 H4 A1H3I sing 32 n n C3 H5 A1H3I sing 33 n n C4 H6 A1H3I sing 34 n n C4 H7 A1H3I sing 35 n n C4 H8 A1H3I sing 36 n n C7 H9 A1H3I sing 37 n n C7 H10 A1H3I sing 38 n n C7 H11 A1H3I sing 39 n n C H12 A1H3I sing 40 n n C H13 A1H3I sing 41 n n C H14 A1H3I sing 42 n n C10 H15 A1H3I sing 43 n n C12 H16 A1H3I sing 44 n n C16 H17 A1H3I sing 45 n n C17 H18 A1H3I sing 46 n n C9 H19 A1H3I sing 47 n n O2 H20 A1H3I sing 48 n n # _atom_sites.entry_id 8RWI _atom_sites.fract_transf_matrix[1][1] 0.024661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1H3I A 1 1201 1201 A1H3I IST . C 3 CLR A 1 1202 1202 CLR CLR . D 3 CLR A 1 1203 1203 CLR CLR . E 3 CLR A 1 1204 1204 CLR CLR . F 4 OLA A 1 1205 1205 OLA OLA . G 4 OLA A 1 1206 1206 OLA OLA . H 4 OLA A 1 1207 1207 OLA OLA . I 4 OLA A 1 1208 1208 OLA OLA . J 4 OLA A 1 1209 1209 OLA OLA . K 4 OLA A 1 1210 1210 OLA OLA . L 4 OLA A 1 1211 1211 OLA OLA . M 4 OLA A 1 1212 1212 OLA OLA . N 4 OLA A 1 1213 1213 OLA OLA . O 4 OLA A 1 1214 1214 OLA OLA . P 4 OLA A 1 1215 1215 OLA OLA . Q 4 OLA A 1 1216 1216 OLA OLA . R 4 OLA A 1 1217 1217 OLA OLA . S 4 OLA A 1 1218 1218 OLA OLA . T 4 OLA A 1 1219 1219 OLA OLA . U 4 OLA A 1 1220 1220 OLA OLA . V 4 OLA A 1 1221 1221 OLA OLA . W 5 NA A 1 1222 1 NA NA . X 6 HOH A 1 1301 4 HOH HOH . X 6 HOH A 2 1302 8 HOH HOH . X 6 HOH A 3 1303 14 HOH HOH . X 6 HOH A 4 1304 10 HOH HOH . X 6 HOH A 5 1305 9 HOH HOH . X 6 HOH A 6 1306 3 HOH HOH . X 6 HOH A 7 1307 12 HOH HOH . X 6 HOH A 8 1308 6 HOH HOH . X 6 HOH A 9 1309 11 HOH HOH . X 6 HOH A 10 1310 2 HOH HOH . X 6 HOH A 11 1311 5 HOH HOH . X 6 HOH A 12 1312 7 HOH HOH . X 6 HOH A 13 1313 1 HOH HOH . X 6 HOH A 14 1314 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 A1H3I . . . B 2 -24.798 10.976 12.282 0.8 66.38 ? O1 A1H3I 1201 A 1 HETATM 2 C C1 A1H3I . . . B 2 -21.55 3.874 19.773 0.8 48.82 ? C1 A1H3I 1201 A 1 HETATM 3 C C2 A1H3I . . . B 2 -22.961 5.465 18.556 0.8 53.45 ? C2 A1H3I 1201 A 1 HETATM 4 C C3 A1H3I . . . B 2 -24.349 6.987 17.236 0.8 50.41 ? C3 A1H3I 1201 A 1 HETATM 5 C C4 A1H3I . . . B 2 -24.628 6.454 15.858 0.8 61.64 ? C4 A1H3I 1201 A 1 HETATM 6 C C5 A1H3I . . . B 2 -22.022 7.526 17.821 0.8 51.21 ? C5 A1H3I 1201 A 1 HETATM 7 C C6 A1H3I . . . B 2 -20.872 7.281 18.473 0.8 50.67 ? C6 A1H3I 1201 A 1 HETATM 8 C C7 A1H3I . . . B 2 -18.749 8.653 18.806 0.8 58.3 ? C7 A1H3I 1201 A 1 HETATM 9 C C8 A1H3I . . . B 2 -20.837 9.269 17.508 0.8 52.21 ? C8 A1H3I 1201 A 1 HETATM 10 N N A1H3I . . . B 2 -21.72 5.181 19.113 0.8 51.76 ? N A1H3I 1201 A 1 HETATM 11 C C A1H3I . . . B 2 -21.621 2.715 18.808 0.8 54.21 ? C A1H3I 1201 A 1 HETATM 12 O O A1H3I . . . B 2 -23.944 4.784 18.789 0.8 59.26 ? O A1H3I 1201 A 1 HETATM 13 C C10 A1H3I . . . B 2 -21.16 11.46 16.506 0.8 50.88 ? C10 A1H3I 1201 A 1 HETATM 14 C C11 A1H3I . . . B 2 -21.957 11.397 15.275 0.8 56.48 ? C11 A1H3I 1201 A 1 HETATM 15 C C12 A1H3I . . . B 2 -22.793 12.453 14.908 0.8 65.66 ? C12 A1H3I 1201 A 1 HETATM 16 C C13 A1H3I . . . B 2 -23.708 12.295 13.884 0.8 68.19 ? C13 A1H3I 1201 A 1 HETATM 17 C C14 A1H3I . . . B 2 -23.791 11.069 13.2 0.8 63.1 ? C14 A1H3I 1201 A 1 HETATM 18 C C16 A1H3I . . . B 2 -22.926 10.038 13.524 0.8 62.37 ? C16 A1H3I 1201 A 1 HETATM 19 C C17 A1H3I . . . B 2 -22.015 10.21 14.549 0.8 58.32 ? C17 A1H3I 1201 A 1 HETATM 20 C C19 A1H3I . . . B 2 -20.617 6.051 19.148 0.8 50.1 ? C19 A1H3I 1201 A 1 HETATM 21 C C9 A1H3I . . . B 2 -20.339 10.516 16.952 0.8 52.92 ? C9 A1H3I 1201 A 1 HETATM 22 N N1 A1H3I . . . B 2 -23.024 6.574 17.728 0.8 51.05 ? N1 A1H3I 1201 A 1 HETATM 23 N N2 A1H3I . . . B 2 -20.094 8.413 18.277 0.8 52.69 ? N2 A1H3I 1201 A 1 HETATM 24 N N3 A1H3I . . . B 2 -22.036 8.75 17.234 0.8 52.49 ? N3 A1H3I 1201 A 1 HETATM 25 O O2 A1H3I . . . B 2 -24.573 13.263 13.46 0.8 75.1 ? O2 A1H3I 1201 A 1 HETATM 26 O O3 A1H3I . . . B 2 -19.582 5.726 19.719 0.8 47.83 ? O3 A1H3I 1201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #