data_8RWK # _model_server_result.job_id SLvz2rRxuWbwIOPyxWuj0A _model_server_result.datetime_utc '2025-02-18 19:54:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rwk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 8RWK # _exptl.entry_id 8RWK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RWK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 235 n n PA O2A NAP sing 236 n n PA O5B NAP sing 237 n n PA O3 NAP sing 238 n n O2A HOA2 NAP sing 239 n n O5B C5B NAP sing 240 n n C5B C4B NAP sing 241 n n C5B H51A NAP sing 242 n n C5B H52A NAP sing 243 n n C4B O4B NAP sing 244 n n C4B C3B NAP sing 245 n n C4B H4B NAP sing 246 n n O4B C1B NAP sing 247 n n C3B O3B NAP sing 248 n n C3B C2B NAP sing 249 n n C3B H3B NAP sing 250 n n O3B HO3A NAP sing 251 n n C2B O2B NAP sing 252 n n C2B C1B NAP sing 253 n n C2B H2B NAP sing 254 n n O2B P2B NAP sing 255 n n C1B N9A NAP sing 256 n n C1B H1B NAP sing 257 n n N9A C8A NAP sing 258 n y N9A C4A NAP sing 259 n y C8A N7A NAP doub 260 n y C8A H8A NAP sing 261 n n N7A C5A NAP sing 262 n y C5A C6A NAP sing 263 n y C5A C4A NAP doub 264 n y C6A N6A NAP sing 265 n n C6A N1A NAP doub 266 n y N6A H61A NAP sing 267 n n N6A H62A NAP sing 268 n n N1A C2A NAP sing 269 n y C2A N3A NAP doub 270 n y C2A H2A NAP sing 271 n n N3A C4A NAP sing 272 n y O3 PN NAP sing 273 n n PN O1N NAP doub 274 n n PN O2N NAP sing 275 n n PN O5D NAP sing 276 n n O5D C5D NAP sing 277 n n C5D C4D NAP sing 278 n n C5D H51N NAP sing 279 n n C5D H52N NAP sing 280 n n C4D O4D NAP sing 281 n n C4D C3D NAP sing 282 n n C4D H4D NAP sing 283 n n O4D C1D NAP sing 284 n n C3D O3D NAP sing 285 n n C3D C2D NAP sing 286 n n C3D H3D NAP sing 287 n n O3D HO3N NAP sing 288 n n C2D O2D NAP sing 289 n n C2D C1D NAP sing 290 n n C2D H2D NAP sing 291 n n O2D HO2N NAP sing 292 n n C1D N1N NAP sing 293 n n C1D H1D NAP sing 294 n n N1N C2N NAP sing 295 n y N1N C6N NAP doub 296 n y C2N C3N NAP doub 297 n y C2N H2N NAP sing 298 n n C3N C7N NAP sing 299 n n C3N C4N NAP sing 300 n y C7N O7N NAP doub 301 n n C7N N7N NAP sing 302 n n N7N H71N NAP sing 303 n n N7N H72N NAP sing 304 n n C4N C5N NAP doub 305 n y C4N H4N NAP sing 306 n n C5N C6N NAP sing 307 n y C5N H5N NAP sing 308 n n C6N H6N NAP sing 309 n n P2B O1X NAP doub 310 n n P2B O2X NAP sing 311 n n P2B O3X NAP sing 312 n n O2X HOP2 NAP sing 313 n n O3X HOP3 NAP sing 314 n n # _atom_sites.entry_id 8RWK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 601 601 NAP NAP . F 2 NAP B 1 601 601 NAP NAP . G 2 NAP C 1 601 601 NAP NAP . H 2 NAP D 1 601 601 NAP NAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . G 2 97.957 96.194 60.888 1 85.27 ? PA NAP 601 C 1 HETATM 2 O O1A NAP . . . G 2 97.563 96.616 59.5 1 85.27 ? O1A NAP 601 C 1 HETATM 3 O O2A NAP . . . G 2 99.39 96.411 61.278 1 85.27 ? O2A NAP 601 C 1 HETATM 4 O O5B NAP . . . G 2 96.967 96.814 62.017 1 85.27 ? O5B NAP 601 C 1 HETATM 5 C C5B NAP . . . G 2 97.137 98.087 62.564 1 85.27 ? C5B NAP 601 C 1 HETATM 6 C C4B NAP . . . G 2 95.746 98.607 63.019 1 85.27 ? C4B NAP 601 C 1 HETATM 7 O O4B NAP . . . G 2 95.733 99.94 62.921 1 85.27 ? O4B NAP 601 C 1 HETATM 8 C C3B NAP . . . G 2 94.644 98.053 62.111 1 85.27 ? C3B NAP 601 C 1 HETATM 9 O O3B NAP . . . G 2 93.591 97.676 62.939 1 85.27 ? O3B NAP 601 C 1 HETATM 10 C C2B NAP . . . G 2 94.339 99.258 61.172 1 85.27 ? C2B NAP 601 C 1 HETATM 11 O O2B NAP . . . G 2 92.879 99.429 61.098 1 85.27 ? O2B NAP 601 C 1 HETATM 12 C C1B NAP . . . G 2 94.917 100.415 61.674 1 85.27 ? C1B NAP 601 C 1 HETATM 13 N N9A NAP . . . G 2 95.896 100.97 60.729 1 85.27 ? N9A NAP 601 C 1 HETATM 14 C C8A NAP . . . G 2 96.768 100.269 59.985 1 85.27 ? C8A NAP 601 C 1 HETATM 15 N N7A NAP . . . G 2 97.477 101.096 59.214 1 85.27 ? N7A NAP 601 C 1 HETATM 16 C C5A NAP . . . G 2 97.049 102.351 59.449 1 85.27 ? C5A NAP 601 C 1 HETATM 17 C C6A NAP . . . G 2 97.424 103.596 58.931 1 85.27 ? C6A NAP 601 C 1 HETATM 18 N N6A NAP . . . G 2 98.433 103.854 57.93 1 85.27 ? N6A NAP 601 C 1 HETATM 19 N N1A NAP . . . G 2 96.815 104.705 59.368 1 85.27 ? N1A NAP 601 C 1 HETATM 20 C C2A NAP . . . G 2 95.867 104.569 60.31 1 85.27 ? C2A NAP 601 C 1 HETATM 21 N N3A NAP . . . G 2 95.477 103.395 60.81 1 85.27 ? N3A NAP 601 C 1 HETATM 22 C C4A NAP . . . G 2 96.07 102.268 60.397 1 85.27 ? C4A NAP 601 C 1 HETATM 23 O O3 NAP . . . G 2 97.572 94.648 61.138 1 85.27 ? O3 NAP 601 C 1 HETATM 24 P PN NAP . . . G 2 96.873 93.632 60.099 1 85.27 ? PN NAP 601 C 1 HETATM 25 O O1N NAP . . . G 2 97.711 93.548 58.854 1 85.27 ? O1N NAP 601 C 1 HETATM 26 O O2N NAP . . . G 2 95.397 93.901 59.972 1 85.27 ? O2N NAP 601 C 1 HETATM 27 O O5D NAP . . . G 2 97.045 92.255 60.926 1 85.27 ? O5D NAP 601 C 1 HETATM 28 C C5D NAP . . . G 2 98.157 91.433 60.649 1 85.27 ? C5D NAP 601 C 1 HETATM 29 C C4D NAP . . . G 2 99.198 91.567 61.805 1 85.27 ? C4D NAP 601 C 1 HETATM 30 O O4D NAP . . . G 2 98.899 92.575 62.638 1 85.27 ? O4D NAP 601 C 1 HETATM 31 C C3D NAP . . . G 2 99.186 90.331 62.725 1 85.27 ? C3D NAP 601 C 1 HETATM 32 O O3D NAP . . . G 2 99.868 89.253 62.163 1 85.27 ? O3D NAP 601 C 1 HETATM 33 C C2D NAP . . . G 2 99.895 90.948 63.963 1 85.27 ? C2D NAP 601 C 1 HETATM 34 O O2D NAP . . . G 2 101.344 90.655 63.878 1 85.27 ? O2D NAP 601 C 1 HETATM 35 C C1D NAP . . . G 2 99.771 92.325 63.919 1 85.27 ? C1D NAP 601 C 1 HETATM 36 N N1N NAP . . . G 2 99.112 92.889 65.09 1 85.27 ? N1N NAP 601 C 1 HETATM 37 C C2N NAP . . . G 2 99.689 92.614 66.282 1 85.27 ? C2N NAP 601 C 1 HETATM 38 C C3N NAP . . . G 2 99.108 93.091 67.438 1 85.27 ? C3N NAP 601 C 1 HETATM 39 C C7N NAP . . . G 2 99.8 92.73 68.725 1 85.27 ? C7N NAP 601 C 1 HETATM 40 O O7N NAP . . . G 2 100.857 92.193 68.727 1 85.27 ? O7N NAP 601 C 1 HETATM 41 N N7N NAP . . . G 2 99.144 93.043 69.937 1 85.27 ? N7N NAP 601 C 1 HETATM 42 C C4N NAP . . . G 2 97.968 93.865 67.424 1 85.27 ? C4N NAP 601 C 1 HETATM 43 C C5N NAP . . . G 2 97.398 94.156 66.199 1 85.27 ? C5N NAP 601 C 1 HETATM 44 C C6N NAP . . . G 2 97.982 93.656 65.013 1 85.27 ? C6N NAP 601 C 1 HETATM 45 P P2B NAP . . . G 2 92.086 98.592 59.97 1 85.27 ? P2B NAP 601 C 1 HETATM 46 O O1X NAP . . . G 2 93.109 97.713 59.315 1 85.27 ? O1X NAP 601 C 1 HETATM 47 O O2X NAP . . . G 2 91.033 97.816 60.711 1 85.27 ? O2X NAP 601 C 1 HETATM 48 O O3X NAP . . . G 2 91.553 99.612 59.038 1 85.27 ? O3X NAP 601 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #