data_8RWL
#
_model_server_result.job_id            tXEjEdATTE6jeCQPitSAAw 
_model_server_result.datetime_utc      '2024-12-27 00:02:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rwl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    8RWL 
#
_exptl.entry_id    8RWL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RWL 
_cell.length_a            78.25 
_cell.length_b            78.25 
_cell.length_c            251.3 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RWL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 22 A ALA 22 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? 
metalc ? metalc2 A O LEU 24 A LEU 24 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? 
metalc ? metalc3 A O VAL 27 A VAL 27 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc4 A O ASP 59 A ASP 59 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc5 H NA NA . A NA 406 1_555 N O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? 
metalc ? metalc6 H NA NA . A NA 406 1_555 N O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc7 B O ALA 22 B ALA 22 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
metalc ? metalc8 B O LEU 24 B LEU 24 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc9 B O VAL 27 B VAL 27 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc10 B O ASP 59 B ASP 59 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc11 M NA NA . B NA 405 1_555 O O HOH . B HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc12 M NA NA . B NA 405 1_555 O O HOH . B HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8RWL 
_atom_sites.fract_transf_matrix[1][1]    0.01278 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01278 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003979 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 401 401 NDP NDP . 
D 3 GOL A 1 402 402 GOL GOL . 
E 3 GOL A 1 403 403 GOL GOL . 
F 4 CL A 1 404 1 CL CL . 
G 4 CL A 1 405 3 CL CL . 
H 5 NA A 1 406 2 NA NA . 
I 2 NDP B 1 401 401 NDP NDP . 
J 3 GOL B 1 402 402 GOL GOL . 
K 3 GOL B 1 403 403 GOL GOL . 
L 4 CL B 1 404 2 CL CL . 
M 5 NA B 1 405 1 NA NA . 
N 6 HOH A 1 501 39 HOH HOH . 
N 6 HOH A 2 502 9 HOH HOH . 
N 6 HOH A 3 503 114 HOH HOH . 
N 6 HOH A 4 504 83 HOH HOH . 
N 6 HOH A 5 505 8 HOH HOH . 
N 6 HOH A 6 506 41 HOH HOH . 
N 6 HOH A 7 507 56 HOH HOH . 
N 6 HOH A 8 508 14 HOH HOH . 
N 6 HOH A 9 509 30 HOH HOH . 
N 6 HOH A 10 510 94 HOH HOH . 
N 6 HOH A 11 511 29 HOH HOH . 
N 6 HOH A 12 512 45 HOH HOH . 
N 6 HOH A 13 513 99 HOH HOH . 
N 6 HOH A 14 514 42 HOH HOH . 
N 6 HOH A 15 515 90 HOH HOH . 
N 6 HOH A 16 516 57 HOH HOH . 
N 6 HOH A 17 517 112 HOH HOH . 
N 6 HOH A 18 518 3 HOH HOH . 
N 6 HOH A 19 519 21 HOH HOH . 
N 6 HOH A 20 520 18 HOH HOH . 
N 6 HOH A 21 521 35 HOH HOH . 
N 6 HOH A 22 522 16 HOH HOH . 
N 6 HOH A 23 523 84 HOH HOH . 
N 6 HOH A 24 524 95 HOH HOH . 
N 6 HOH A 25 525 67 HOH HOH . 
N 6 HOH A 26 526 34 HOH HOH . 
N 6 HOH A 27 527 58 HOH HOH . 
N 6 HOH A 28 528 59 HOH HOH . 
N 6 HOH A 29 529 54 HOH HOH . 
N 6 HOH A 30 530 98 HOH HOH . 
N 6 HOH A 31 531 100 HOH HOH . 
N 6 HOH A 32 532 85 HOH HOH . 
N 6 HOH A 33 533 38 HOH HOH . 
N 6 HOH A 34 534 40 HOH HOH . 
N 6 HOH A 35 535 82 HOH HOH . 
N 6 HOH A 36 536 117 HOH HOH . 
N 6 HOH A 37 537 60 HOH HOH . 
N 6 HOH A 38 538 115 HOH HOH . 
N 6 HOH A 39 539 33 HOH HOH . 
N 6 HOH A 40 540 108 HOH HOH . 
N 6 HOH A 41 541 43 HOH HOH . 
N 6 HOH A 42 542 126 HOH HOH . 
N 6 HOH A 43 543 37 HOH HOH . 
N 6 HOH A 44 544 116 HOH HOH . 
N 6 HOH A 45 545 110 HOH HOH . 
N 6 HOH A 46 546 128 HOH HOH . 
N 6 HOH A 47 547 109 HOH HOH . 
N 6 HOH A 48 548 31 HOH HOH . 
N 6 HOH A 49 549 131 HOH HOH . 
N 6 HOH A 50 550 101 HOH HOH . 
N 6 HOH A 51 551 55 HOH HOH . 
N 6 HOH A 52 552 136 HOH HOH . 
N 6 HOH A 53 553 36 HOH HOH . 
N 6 HOH A 54 554 61 HOH HOH . 
N 6 HOH A 55 555 63 HOH HOH . 
N 6 HOH A 56 556 129 HOH HOH . 
N 6 HOH A 57 557 130 HOH HOH . 
O 6 HOH B 1 501 44 HOH HOH . 
O 6 HOH B 2 502 27 HOH HOH . 
O 6 HOH B 3 503 106 HOH HOH . 
O 6 HOH B 4 504 146 HOH HOH . 
O 6 HOH B 5 505 148 HOH HOH . 
O 6 HOH B 6 506 49 HOH HOH . 
O 6 HOH B 7 507 20 HOH HOH . 
O 6 HOH B 8 508 70 HOH HOH . 
O 6 HOH B 9 509 147 HOH HOH . 
O 6 HOH B 10 510 13 HOH HOH . 
O 6 HOH B 11 511 19 HOH HOH . 
O 6 HOH B 12 512 17 HOH HOH . 
O 6 HOH B 13 513 78 HOH HOH . 
O 6 HOH B 14 514 1 HOH HOH . 
O 6 HOH B 15 515 12 HOH HOH . 
O 6 HOH B 16 516 89 HOH HOH . 
O 6 HOH B 17 517 71 HOH HOH . 
O 6 HOH B 18 518 75 HOH HOH . 
O 6 HOH B 19 519 107 HOH HOH . 
O 6 HOH B 20 520 25 HOH HOH . 
O 6 HOH B 21 521 26 HOH HOH . 
O 6 HOH B 22 522 127 HOH HOH . 
O 6 HOH B 23 523 32 HOH HOH . 
O 6 HOH B 24 524 4 HOH HOH . 
O 6 HOH B 25 525 69 HOH HOH . 
O 6 HOH B 26 526 2 HOH HOH . 
O 6 HOH B 27 527 22 HOH HOH . 
O 6 HOH B 28 528 10 HOH HOH . 
O 6 HOH B 29 529 5 HOH HOH . 
O 6 HOH B 30 530 6 HOH HOH . 
O 6 HOH B 31 531 23 HOH HOH . 
O 6 HOH B 32 532 48 HOH HOH . 
O 6 HOH B 33 533 28 HOH HOH . 
O 6 HOH B 34 534 11 HOH HOH . 
O 6 HOH B 35 535 74 HOH HOH . 
O 6 HOH B 36 536 53 HOH HOH . 
O 6 HOH B 37 537 46 HOH HOH . 
O 6 HOH B 38 538 24 HOH HOH . 
O 6 HOH B 39 539 92 HOH HOH . 
O 6 HOH B 40 540 65 HOH HOH . 
O 6 HOH B 41 541 73 HOH HOH . 
O 6 HOH B 42 542 68 HOH HOH . 
O 6 HOH B 43 543 76 HOH HOH . 
O 6 HOH B 44 544 104 HOH HOH . 
O 6 HOH B 45 545 15 HOH HOH . 
O 6 HOH B 46 546 87 HOH HOH . 
O 6 HOH B 47 547 103 HOH HOH . 
O 6 HOH B 48 548 124 HOH HOH . 
O 6 HOH B 49 549 149 HOH HOH . 
O 6 HOH B 50 550 77 HOH HOH . 
O 6 HOH B 51 551 119 HOH HOH . 
O 6 HOH B 52 552 52 HOH HOH . 
O 6 HOH B 53 553 105 HOH HOH . 
O 6 HOH B 54 554 79 HOH HOH . 
O 6 HOH B 55 555 47 HOH HOH . 
O 6 HOH B 56 556 133 HOH HOH . 
O 6 HOH B 57 557 7 HOH HOH . 
O 6 HOH B 58 558 125 HOH HOH . 
O 6 HOH B 59 559 66 HOH HOH . 
O 6 HOH B 60 560 72 HOH HOH . 
O 6 HOH B 61 561 51 HOH HOH . 
O 6 HOH B 62 562 118 HOH HOH . 
O 6 HOH B 63 563 122 HOH HOH . 
O 6 HOH B 64 564 81 HOH HOH . 
O 6 HOH B 65 565 64 HOH HOH . 
O 6 HOH B 66 566 86 HOH HOH . 
O 6 HOH B 67 567 91 HOH HOH . 
O 6 HOH B 68 568 93 HOH HOH . 
O 6 HOH B 69 569 134 HOH HOH . 
O 6 HOH B 70 570 143 HOH HOH . 
O 6 HOH B 71 571 132 HOH HOH . 
O 6 HOH B 72 572 121 HOH HOH . 
O 6 HOH B 73 573 50 HOH HOH . 
O 6 HOH B 74 574 80 HOH HOH . 
O 6 HOH B 75 575 88 HOH HOH . 
O 6 HOH B 76 576 97 HOH HOH . 
O 6 HOH B 77 577 120 HOH HOH . 
O 6 HOH B 78 578 102 HOH HOH . 
O 6 HOH B 79 579 145 HOH HOH . 
O 6 HOH B 80 580 123 HOH HOH . 
O 6 HOH B 81 581 96 HOH HOH . 
O 6 HOH B 82 582 144 HOH HOH . 
O 6 HOH B 83 583 142 HOH HOH . 
O 6 HOH B 84 584 140 HOH HOH . 
O 6 HOH B 85 585 141 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 1.216 -21.904 -12.915 1 85.66 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . D 3 0.554 -20.681 -13.125 1 85.77 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . D 3 0.212 -23.036 -13.051 1 79.45 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . D 3 0.873 -24.266 -12.836 1 82.32 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . D 3 -0.936 -22.835 -12.048 1 89.64 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . D 3 -0.357 -22.683 -10.764 1 86.19 ? O3 GOL 402 A 1 
HETATM 7 H H11 GOL . . . D 3 1.93 -22.038 -13.557 1 102.96 ? H11 GOL 402 A 1 
HETATM 8 H H12 GOL . . . D 3 1.618 -21.945 -12.033 1 102.96 ? H12 GOL 402 A 1 
HETATM 9 H HO1 GOL . . . D 3 1.112 -20.133 -13.459 1 103.1 ? HO1 GOL 402 A 1 
HETATM 10 H H2 GOL . . . D 3 -0.157 -23.006 -13.947 1 95.52 ? H2 GOL 402 A 1 
HETATM 11 H HO2 GOL . . . D 3 0.313 -24.887 -12.987 1 98.95 ? HO2 GOL 402 A 1 
HETATM 12 H H31 GOL . . . D 3 -1.453 -22.054 -12.302 1 107.75 ? H31 GOL 402 A 1 
HETATM 13 H H32 GOL . . . D 3 -1.533 -23.599 -12.083 1 107.75 ? H32 GOL 402 A 1 
HETATM 14 H HO3 GOL . . . D 3 -0.967 -22.458 -10.217 1 103.61 ? HO3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           47 
_model_server_stats.create_model_time_ms    50 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#