data_8RWL # _model_server_result.job_id nq8-_e9H0bJmrodKnCLfYA _model_server_result.datetime_utc '2024-10-12 15:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":402}' # _entry.id 8RWL # _exptl.entry_id 8RWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RWL _cell.length_a 78.25 _cell.length_b 78.25 _cell.length_c 251.3 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 22 A ALA 22 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc2 A O LEU 24 A LEU 24 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc3 A O VAL 27 A VAL 27 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc4 A O ASP 59 A ASP 59 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc5 H NA NA . A NA 406 1_555 N O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc6 H NA NA . A NA 406 1_555 N O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc7 B O ALA 22 B ALA 22 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc8 B O LEU 24 B LEU 24 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc9 B O VAL 27 B VAL 27 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc10 B O ASP 59 B ASP 59 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc11 M NA NA . B NA 405 1_555 O O HOH . B HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc12 M NA NA . B NA 405 1_555 O O HOH . B HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8RWL _atom_sites.fract_transf_matrix[1][1] 0.01278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 401 401 NDP NDP . D 3 GOL A 1 402 402 GOL GOL . E 3 GOL A 1 403 403 GOL GOL . F 4 CL A 1 404 1 CL CL . G 4 CL A 1 405 3 CL CL . H 5 NA A 1 406 2 NA NA . I 2 NDP B 1 401 401 NDP NDP . J 3 GOL B 1 402 402 GOL GOL . K 3 GOL B 1 403 403 GOL GOL . L 4 CL B 1 404 2 CL CL . M 5 NA B 1 405 1 NA NA . N 6 HOH A 1 501 39 HOH HOH . N 6 HOH A 2 502 9 HOH HOH . N 6 HOH A 3 503 114 HOH HOH . N 6 HOH A 4 504 83 HOH HOH . N 6 HOH A 5 505 8 HOH HOH . N 6 HOH A 6 506 41 HOH HOH . N 6 HOH A 7 507 56 HOH HOH . N 6 HOH A 8 508 14 HOH HOH . N 6 HOH A 9 509 30 HOH HOH . N 6 HOH A 10 510 94 HOH HOH . N 6 HOH A 11 511 29 HOH HOH . N 6 HOH A 12 512 45 HOH HOH . N 6 HOH A 13 513 99 HOH HOH . N 6 HOH A 14 514 42 HOH HOH . N 6 HOH A 15 515 90 HOH HOH . N 6 HOH A 16 516 57 HOH HOH . N 6 HOH A 17 517 112 HOH HOH . N 6 HOH A 18 518 3 HOH HOH . N 6 HOH A 19 519 21 HOH HOH . N 6 HOH A 20 520 18 HOH HOH . N 6 HOH A 21 521 35 HOH HOH . N 6 HOH A 22 522 16 HOH HOH . N 6 HOH A 23 523 84 HOH HOH . N 6 HOH A 24 524 95 HOH HOH . N 6 HOH A 25 525 67 HOH HOH . N 6 HOH A 26 526 34 HOH HOH . N 6 HOH A 27 527 58 HOH HOH . N 6 HOH A 28 528 59 HOH HOH . N 6 HOH A 29 529 54 HOH HOH . N 6 HOH A 30 530 98 HOH HOH . N 6 HOH A 31 531 100 HOH HOH . N 6 HOH A 32 532 85 HOH HOH . N 6 HOH A 33 533 38 HOH HOH . N 6 HOH A 34 534 40 HOH HOH . N 6 HOH A 35 535 82 HOH HOH . N 6 HOH A 36 536 117 HOH HOH . N 6 HOH A 37 537 60 HOH HOH . N 6 HOH A 38 538 115 HOH HOH . N 6 HOH A 39 539 33 HOH HOH . N 6 HOH A 40 540 108 HOH HOH . N 6 HOH A 41 541 43 HOH HOH . N 6 HOH A 42 542 126 HOH HOH . N 6 HOH A 43 543 37 HOH HOH . N 6 HOH A 44 544 116 HOH HOH . N 6 HOH A 45 545 110 HOH HOH . N 6 HOH A 46 546 128 HOH HOH . N 6 HOH A 47 547 109 HOH HOH . N 6 HOH A 48 548 31 HOH HOH . N 6 HOH A 49 549 131 HOH HOH . N 6 HOH A 50 550 101 HOH HOH . N 6 HOH A 51 551 55 HOH HOH . N 6 HOH A 52 552 136 HOH HOH . N 6 HOH A 53 553 36 HOH HOH . N 6 HOH A 54 554 61 HOH HOH . N 6 HOH A 55 555 63 HOH HOH . N 6 HOH A 56 556 129 HOH HOH . N 6 HOH A 57 557 130 HOH HOH . O 6 HOH B 1 501 44 HOH HOH . O 6 HOH B 2 502 27 HOH HOH . O 6 HOH B 3 503 106 HOH HOH . O 6 HOH B 4 504 146 HOH HOH . O 6 HOH B 5 505 148 HOH HOH . O 6 HOH B 6 506 49 HOH HOH . O 6 HOH B 7 507 20 HOH HOH . O 6 HOH B 8 508 70 HOH HOH . O 6 HOH B 9 509 147 HOH HOH . O 6 HOH B 10 510 13 HOH HOH . O 6 HOH B 11 511 19 HOH HOH . O 6 HOH B 12 512 17 HOH HOH . O 6 HOH B 13 513 78 HOH HOH . O 6 HOH B 14 514 1 HOH HOH . O 6 HOH B 15 515 12 HOH HOH . O 6 HOH B 16 516 89 HOH HOH . O 6 HOH B 17 517 71 HOH HOH . O 6 HOH B 18 518 75 HOH HOH . O 6 HOH B 19 519 107 HOH HOH . O 6 HOH B 20 520 25 HOH HOH . O 6 HOH B 21 521 26 HOH HOH . O 6 HOH B 22 522 127 HOH HOH . O 6 HOH B 23 523 32 HOH HOH . O 6 HOH B 24 524 4 HOH HOH . O 6 HOH B 25 525 69 HOH HOH . O 6 HOH B 26 526 2 HOH HOH . O 6 HOH B 27 527 22 HOH HOH . O 6 HOH B 28 528 10 HOH HOH . O 6 HOH B 29 529 5 HOH HOH . O 6 HOH B 30 530 6 HOH HOH . O 6 HOH B 31 531 23 HOH HOH . O 6 HOH B 32 532 48 HOH HOH . O 6 HOH B 33 533 28 HOH HOH . O 6 HOH B 34 534 11 HOH HOH . O 6 HOH B 35 535 74 HOH HOH . O 6 HOH B 36 536 53 HOH HOH . O 6 HOH B 37 537 46 HOH HOH . O 6 HOH B 38 538 24 HOH HOH . O 6 HOH B 39 539 92 HOH HOH . O 6 HOH B 40 540 65 HOH HOH . O 6 HOH B 41 541 73 HOH HOH . O 6 HOH B 42 542 68 HOH HOH . O 6 HOH B 43 543 76 HOH HOH . O 6 HOH B 44 544 104 HOH HOH . O 6 HOH B 45 545 15 HOH HOH . O 6 HOH B 46 546 87 HOH HOH . O 6 HOH B 47 547 103 HOH HOH . O 6 HOH B 48 548 124 HOH HOH . O 6 HOH B 49 549 149 HOH HOH . O 6 HOH B 50 550 77 HOH HOH . O 6 HOH B 51 551 119 HOH HOH . O 6 HOH B 52 552 52 HOH HOH . O 6 HOH B 53 553 105 HOH HOH . O 6 HOH B 54 554 79 HOH HOH . O 6 HOH B 55 555 47 HOH HOH . O 6 HOH B 56 556 133 HOH HOH . O 6 HOH B 57 557 7 HOH HOH . O 6 HOH B 58 558 125 HOH HOH . O 6 HOH B 59 559 66 HOH HOH . O 6 HOH B 60 560 72 HOH HOH . O 6 HOH B 61 561 51 HOH HOH . O 6 HOH B 62 562 118 HOH HOH . O 6 HOH B 63 563 122 HOH HOH . O 6 HOH B 64 564 81 HOH HOH . O 6 HOH B 65 565 64 HOH HOH . O 6 HOH B 66 566 86 HOH HOH . O 6 HOH B 67 567 91 HOH HOH . O 6 HOH B 68 568 93 HOH HOH . O 6 HOH B 69 569 134 HOH HOH . O 6 HOH B 70 570 143 HOH HOH . O 6 HOH B 71 571 132 HOH HOH . O 6 HOH B 72 572 121 HOH HOH . O 6 HOH B 73 573 50 HOH HOH . O 6 HOH B 74 574 80 HOH HOH . O 6 HOH B 75 575 88 HOH HOH . O 6 HOH B 76 576 97 HOH HOH . O 6 HOH B 77 577 120 HOH HOH . O 6 HOH B 78 578 102 HOH HOH . O 6 HOH B 79 579 145 HOH HOH . O 6 HOH B 80 580 123 HOH HOH . O 6 HOH B 81 581 96 HOH HOH . O 6 HOH B 82 582 144 HOH HOH . O 6 HOH B 83 583 142 HOH HOH . O 6 HOH B 84 584 140 HOH HOH . O 6 HOH B 85 585 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 3 -53.471 -11.91 -16.099 1 89.33 ? C1 GOL 402 B 1 HETATM 2 O O1 GOL . . . J 3 -53.803 -13.079 -16.807 1 100.15 ? O1 GOL 402 B 1 HETATM 3 C C2 GOL . . . J 3 -54.613 -10.919 -16.206 1 93.41 ? C2 GOL 402 B 1 HETATM 4 O O2 GOL . . . J 3 -54.335 -9.829 -15.365 1 94.58 ? O2 GOL 402 B 1 HETATM 5 C C3 GOL . . . J 3 -54.805 -10.482 -17.646 1 93.51 ? C3 GOL 402 B 1 HETATM 6 O O3 GOL . . . J 3 -55.177 -11.624 -18.391 1 97.22 ? O3 GOL 402 B 1 HETATM 7 H H11 GOL . . . J 3 -53.306 -12.098 -15.162 1 107.37 ? H11 GOL 402 B 1 HETATM 8 H H12 GOL . . . J 3 -52.666 -11.499 -16.451 1 107.37 ? H12 GOL 402 B 1 HETATM 9 H HO1 GOL . . . J 3 -53.149 -13.618 -16.748 1 120.35 ? HO1 GOL 402 B 1 HETATM 10 H H2 GOL . . . J 3 -55.427 -11.367 -15.929 1 112.27 ? H2 GOL 402 B 1 HETATM 11 H HO2 GOL . . . J 3 -54.957 -9.259 -15.471 1 113.68 ? HO2 GOL 402 B 1 HETATM 12 H H31 GOL . . . J 3 -55.486 -9.792 -17.686 1 112.38 ? H31 GOL 402 B 1 HETATM 13 H H32 GOL . . . J 3 -53.981 -10.092 -17.978 1 112.38 ? H32 GOL 402 B 1 HETATM 14 H HO3 GOL . . . J 3 -55.376 -11.38 -19.18 1 116.84 ? HO3 GOL 402 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #