data_8RWL # _model_server_result.job_id -_hHNuPr1ycvSXAiJosZNg _model_server_result.datetime_utc '2024-10-12 15:29:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 8RWL # _exptl.entry_id 8RWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RWL _cell.length_a 78.25 _cell.length_b 78.25 _cell.length_c 251.3 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 22 A ALA 22 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc2 A O LEU 24 A LEU 24 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc3 A O VAL 27 A VAL 27 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc4 A O ASP 59 A ASP 59 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc5 H NA NA . A NA 406 1_555 N O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc6 H NA NA . A NA 406 1_555 N O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc7 B O ALA 22 B ALA 22 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc8 B O LEU 24 B LEU 24 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc9 B O VAL 27 B VAL 27 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc10 B O ASP 59 B ASP 59 1_555 M NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc11 M NA NA . B NA 405 1_555 O O HOH . B HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc12 M NA NA . B NA 405 1_555 O O HOH . B HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8RWL _atom_sites.fract_transf_matrix[1][1] 0.01278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 401 401 NDP NDP . D 3 GOL A 1 402 402 GOL GOL . E 3 GOL A 1 403 403 GOL GOL . F 4 CL A 1 404 1 CL CL . G 4 CL A 1 405 3 CL CL . H 5 NA A 1 406 2 NA NA . I 2 NDP B 1 401 401 NDP NDP . J 3 GOL B 1 402 402 GOL GOL . K 3 GOL B 1 403 403 GOL GOL . L 4 CL B 1 404 2 CL CL . M 5 NA B 1 405 1 NA NA . N 6 HOH A 1 501 39 HOH HOH . N 6 HOH A 2 502 9 HOH HOH . N 6 HOH A 3 503 114 HOH HOH . N 6 HOH A 4 504 83 HOH HOH . N 6 HOH A 5 505 8 HOH HOH . N 6 HOH A 6 506 41 HOH HOH . N 6 HOH A 7 507 56 HOH HOH . N 6 HOH A 8 508 14 HOH HOH . N 6 HOH A 9 509 30 HOH HOH . N 6 HOH A 10 510 94 HOH HOH . N 6 HOH A 11 511 29 HOH HOH . N 6 HOH A 12 512 45 HOH HOH . N 6 HOH A 13 513 99 HOH HOH . N 6 HOH A 14 514 42 HOH HOH . N 6 HOH A 15 515 90 HOH HOH . N 6 HOH A 16 516 57 HOH HOH . N 6 HOH A 17 517 112 HOH HOH . N 6 HOH A 18 518 3 HOH HOH . N 6 HOH A 19 519 21 HOH HOH . N 6 HOH A 20 520 18 HOH HOH . N 6 HOH A 21 521 35 HOH HOH . N 6 HOH A 22 522 16 HOH HOH . N 6 HOH A 23 523 84 HOH HOH . N 6 HOH A 24 524 95 HOH HOH . N 6 HOH A 25 525 67 HOH HOH . N 6 HOH A 26 526 34 HOH HOH . N 6 HOH A 27 527 58 HOH HOH . N 6 HOH A 28 528 59 HOH HOH . N 6 HOH A 29 529 54 HOH HOH . N 6 HOH A 30 530 98 HOH HOH . N 6 HOH A 31 531 100 HOH HOH . N 6 HOH A 32 532 85 HOH HOH . N 6 HOH A 33 533 38 HOH HOH . N 6 HOH A 34 534 40 HOH HOH . N 6 HOH A 35 535 82 HOH HOH . N 6 HOH A 36 536 117 HOH HOH . N 6 HOH A 37 537 60 HOH HOH . N 6 HOH A 38 538 115 HOH HOH . N 6 HOH A 39 539 33 HOH HOH . N 6 HOH A 40 540 108 HOH HOH . N 6 HOH A 41 541 43 HOH HOH . N 6 HOH A 42 542 126 HOH HOH . N 6 HOH A 43 543 37 HOH HOH . N 6 HOH A 44 544 116 HOH HOH . N 6 HOH A 45 545 110 HOH HOH . N 6 HOH A 46 546 128 HOH HOH . N 6 HOH A 47 547 109 HOH HOH . N 6 HOH A 48 548 31 HOH HOH . N 6 HOH A 49 549 131 HOH HOH . N 6 HOH A 50 550 101 HOH HOH . N 6 HOH A 51 551 55 HOH HOH . N 6 HOH A 52 552 136 HOH HOH . N 6 HOH A 53 553 36 HOH HOH . N 6 HOH A 54 554 61 HOH HOH . N 6 HOH A 55 555 63 HOH HOH . N 6 HOH A 56 556 129 HOH HOH . N 6 HOH A 57 557 130 HOH HOH . O 6 HOH B 1 501 44 HOH HOH . O 6 HOH B 2 502 27 HOH HOH . O 6 HOH B 3 503 106 HOH HOH . O 6 HOH B 4 504 146 HOH HOH . O 6 HOH B 5 505 148 HOH HOH . O 6 HOH B 6 506 49 HOH HOH . O 6 HOH B 7 507 20 HOH HOH . O 6 HOH B 8 508 70 HOH HOH . O 6 HOH B 9 509 147 HOH HOH . O 6 HOH B 10 510 13 HOH HOH . O 6 HOH B 11 511 19 HOH HOH . O 6 HOH B 12 512 17 HOH HOH . O 6 HOH B 13 513 78 HOH HOH . O 6 HOH B 14 514 1 HOH HOH . O 6 HOH B 15 515 12 HOH HOH . O 6 HOH B 16 516 89 HOH HOH . O 6 HOH B 17 517 71 HOH HOH . O 6 HOH B 18 518 75 HOH HOH . O 6 HOH B 19 519 107 HOH HOH . O 6 HOH B 20 520 25 HOH HOH . O 6 HOH B 21 521 26 HOH HOH . O 6 HOH B 22 522 127 HOH HOH . O 6 HOH B 23 523 32 HOH HOH . O 6 HOH B 24 524 4 HOH HOH . O 6 HOH B 25 525 69 HOH HOH . O 6 HOH B 26 526 2 HOH HOH . O 6 HOH B 27 527 22 HOH HOH . O 6 HOH B 28 528 10 HOH HOH . O 6 HOH B 29 529 5 HOH HOH . O 6 HOH B 30 530 6 HOH HOH . O 6 HOH B 31 531 23 HOH HOH . O 6 HOH B 32 532 48 HOH HOH . O 6 HOH B 33 533 28 HOH HOH . O 6 HOH B 34 534 11 HOH HOH . O 6 HOH B 35 535 74 HOH HOH . O 6 HOH B 36 536 53 HOH HOH . O 6 HOH B 37 537 46 HOH HOH . O 6 HOH B 38 538 24 HOH HOH . O 6 HOH B 39 539 92 HOH HOH . O 6 HOH B 40 540 65 HOH HOH . O 6 HOH B 41 541 73 HOH HOH . O 6 HOH B 42 542 68 HOH HOH . O 6 HOH B 43 543 76 HOH HOH . O 6 HOH B 44 544 104 HOH HOH . O 6 HOH B 45 545 15 HOH HOH . O 6 HOH B 46 546 87 HOH HOH . O 6 HOH B 47 547 103 HOH HOH . O 6 HOH B 48 548 124 HOH HOH . O 6 HOH B 49 549 149 HOH HOH . O 6 HOH B 50 550 77 HOH HOH . O 6 HOH B 51 551 119 HOH HOH . O 6 HOH B 52 552 52 HOH HOH . O 6 HOH B 53 553 105 HOH HOH . O 6 HOH B 54 554 79 HOH HOH . O 6 HOH B 55 555 47 HOH HOH . O 6 HOH B 56 556 133 HOH HOH . O 6 HOH B 57 557 7 HOH HOH . O 6 HOH B 58 558 125 HOH HOH . O 6 HOH B 59 559 66 HOH HOH . O 6 HOH B 60 560 72 HOH HOH . O 6 HOH B 61 561 51 HOH HOH . O 6 HOH B 62 562 118 HOH HOH . O 6 HOH B 63 563 122 HOH HOH . O 6 HOH B 64 564 81 HOH HOH . O 6 HOH B 65 565 64 HOH HOH . O 6 HOH B 66 566 86 HOH HOH . O 6 HOH B 67 567 91 HOH HOH . O 6 HOH B 68 568 93 HOH HOH . O 6 HOH B 69 569 134 HOH HOH . O 6 HOH B 70 570 143 HOH HOH . O 6 HOH B 71 571 132 HOH HOH . O 6 HOH B 72 572 121 HOH HOH . O 6 HOH B 73 573 50 HOH HOH . O 6 HOH B 74 574 80 HOH HOH . O 6 HOH B 75 575 88 HOH HOH . O 6 HOH B 76 576 97 HOH HOH . O 6 HOH B 77 577 120 HOH HOH . O 6 HOH B 78 578 102 HOH HOH . O 6 HOH B 79 579 145 HOH HOH . O 6 HOH B 80 580 123 HOH HOH . O 6 HOH B 81 581 96 HOH HOH . O 6 HOH B 82 582 144 HOH HOH . O 6 HOH B 83 583 142 HOH HOH . O 6 HOH B 84 584 140 HOH HOH . O 6 HOH B 85 585 141 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x -12.449 _atom_site.Cartn_y -2.027 _atom_site.Cartn_z -7.782 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 406 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #