data_8RWX # _model_server_result.job_id dXTMj468OdtuiVKig5vrIg _model_server_result.datetime_utc '2025-01-10 05:41:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rwx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 8RWX # _exptl.entry_id 8RWX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-diethyl-8-[(~{E})-2-(4-methoxy-3-oxidanyl-phenyl)ethenyl]-7-methyl-purine-2,6-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RWX _cell.length_a 40.55 _cell.length_b 182.54 _cell.length_c 143.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RWX _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 S NA NA . A NA 1218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc2 A OD1 ASN 401 A ASN 280 1_555 S NA NA . A NA 1218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? # _chem_comp.formula 'C19 H22 N4 O4' _chem_comp.formula_weight 370.402 _chem_comp.id A1H3H _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-diethyl-8-[(~{E})-2-(4-methoxy-3-oxidanyl-phenyl)ethenyl]-7-methyl-purine-2,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C13 A1H3H sing 1 n n C13 C12 A1H3H doub 2 n y C13 C14 A1H3H sing 3 n y O1 C14 A1H3H sing 4 n n O1 C15 A1H3H sing 5 n n C12 C11 A1H3H sing 6 n y C14 C16 A1H3H doub 7 n y C11 C17 A1H3H doub 8 n y C11 C10 A1H3H sing 9 n n C16 C17 A1H3H sing 10 n y C10 C9 A1H3H doub 11 e n C3 C4 A1H3H sing 12 n n C3 N1 A1H3H sing 13 n n C9 C8 A1H3H sing 14 n n N3 C8 A1H3H doub 15 n y N3 C5 A1H3H sing 16 n y C8 N2 A1H3H sing 17 n y N1 C5 A1H3H sing 18 n n N1 C2 A1H3H sing 19 n n C5 C6 A1H3H doub 20 n y O C2 A1H3H doub 21 n n N2 C6 A1H3H sing 22 n y N2 C7 A1H3H sing 23 n n C2 N A1H3H sing 24 n n C6 C19 A1H3H sing 25 n n N C19 A1H3H sing 26 n n N C1 A1H3H sing 27 n n C C1 A1H3H sing 28 n n C19 O3 A1H3H doub 29 n n C4 H1 A1H3H sing 30 n n C4 H2 A1H3H sing 31 n n C4 H3 A1H3H sing 32 n n C15 H4 A1H3H sing 33 n n C15 H5 A1H3H sing 34 n n C15 H6 A1H3H sing 35 n n C9 H7 A1H3H sing 36 n n C17 H8 A1H3H sing 37 n n C1 H9 A1H3H sing 38 n n C1 H10 A1H3H sing 39 n n C3 H11 A1H3H sing 40 n n C3 H12 A1H3H sing 41 n n C16 H13 A1H3H sing 42 n n C H14 A1H3H sing 43 n n C H15 A1H3H sing 44 n n C H16 A1H3H sing 45 n n C10 H17 A1H3H sing 46 n n C12 H18 A1H3H sing 47 n n C7 H19 A1H3H sing 48 n n C7 H20 A1H3H sing 49 n n C7 H21 A1H3H sing 50 n n O2 H22 A1H3H sing 51 n n # _atom_sites.entry_id 8RWX _atom_sites.fract_transf_matrix[1][1] 0.024661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1H3H A 1 1201 1201 A1H3H SS3 . C 3 OLA A 1 1202 1207 OLA OLA . D 3 OLA A 1 1203 1204 OLA OLA . E 3 OLA A 1 1204 1205 OLA OLA . F 3 OLA A 1 1205 1206 OLA OLA . G 3 OLA A 1 1206 1208 OLA OLA . H 3 OLA A 1 1207 1210 OLA OLA . I 3 OLA A 1 1208 1211 OLA OLA . J 3 OLA A 1 1209 1213 OLA OLA . K 3 OLA A 1 1210 1214 OLA OLA . L 3 OLA A 1 1211 1215 OLA OLA . M 3 OLA A 1 1212 1216 OLA OLA . N 3 OLA A 1 1213 1217 OLA OLA . O 3 OLA A 1 1214 1218 OLA OLA . P 3 OLA A 1 1215 1219 OLA OLA . Q 3 OLA A 1 1216 1220 OLA OLA . R 3 OLA A 1 1217 1221 OLA OLA . S 4 NA A 1 1218 1 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1H3H . . . B 2 -23.3 6.863 17.664 1 73.86 ? N1 A1H3H 1201 A 1 HETATM 2 N N3 A1H3H . . . B 2 -22.212 9.024 17.232 1 76.9 ? N3 A1H3H 1201 A 1 HETATM 3 C C4 A1H3H . . . B 2 -25.314 7.941 16.703 1 82.99 ? C4 A1H3H 1201 A 1 HETATM 4 C C5 A1H3H . . . B 2 -22.234 7.746 17.707 1 73.57 ? C5 A1H3H 1201 A 1 HETATM 5 C C6 A1H3H . . . B 2 -21.037 7.365 18.233 1 75.44 ? C6 A1H3H 1201 A 1 HETATM 6 C C8 A1H3H . . . B 2 -20.964 9.431 17.466 1 79.45 ? C8 A1H3H 1201 A 1 HETATM 7 C C13 A1H3H . . . B 2 -23.488 12.504 13.656 1 96.9 ? C13 A1H3H 1201 A 1 HETATM 8 C C15 A1H3H . . . B 2 -24.842 10.019 11.46 1 91.25 ? C15 A1H3H 1201 A 1 HETATM 9 C C9 A1H3H . . . B 2 -20.422 10.721 17.068 1 75.78 ? C9 A1H3H 1201 A 1 HETATM 10 C C17 A1H3H . . . B 2 -21.897 10.381 14.461 1 84.91 ? C17 A1H3H 1201 A 1 HETATM 11 C C1 A1H3H . . . B 2 -21.773 3.863 19.172 1 68.49 ? C1 A1H3H 1201 A 1 HETATM 12 C C2 A1H3H . . . B 2 -23.209 5.666 18.354 1 76.69 ? C2 A1H3H 1201 A 1 HETATM 13 C C3 A1H3H . . . B 2 -24.22 6.92 16.514 1 82.54 ? C3 A1H3H 1201 A 1 HETATM 14 C C14 A1H3H . . . B 2 -23.477 11.312 12.923 1 89.41 ? C14 A1H3H 1201 A 1 HETATM 15 C C16 A1H3H . . . B 2 -22.672 10.256 13.321 1 83.67 ? C16 A1H3H 1201 A 1 HETATM 16 C C19 A1H3H . . . B 2 -20.777 6.046 18.724 1 75.95 ? C19 A1H3H 1201 A 1 HETATM 17 O O1 A1H3H . . . B 2 -24.33 11.288 11.858 1 94.49 ? O1 A1H3H 1201 A 1 HETATM 18 N N A1H3H . . . B 2 -21.933 5.253 18.711 1 76.91 ? N A1H3H 1201 A 1 HETATM 19 C C A1H3H . . . B 2 -21.88 3.741 20.669 1 72.25 ? C A1H3H 1201 A 1 HETATM 20 O O A1H3H . . . B 2 -24.197 5.01 18.632 1 82.23 ? O A1H3H 1201 A 1 HETATM 21 C C10 A1H3H . . . B 2 -21.158 11.655 16.473 1 77.3 ? C10 A1H3H 1201 A 1 HETATM 22 C C11 A1H3H . . . B 2 -21.909 11.549 15.219 1 87.91 ? C11 A1H3H 1201 A 1 HETATM 23 C C12 A1H3H . . . B 2 -22.707 12.615 14.794 1 94.45 ? C12 A1H3H 1201 A 1 HETATM 24 C C7 A1H3H . . . B 2 -18.819 8.588 18.527 1 78.08 ? C7 A1H3H 1201 A 1 HETATM 25 N N2 A1H3H . . . B 2 -20.211 8.469 18.084 1 79.65 ? N2 A1H3H 1201 A 1 HETATM 26 O O2 A1H3H . . . B 2 -24.257 13.55 13.257 1 93.57 ? O2 A1H3H 1201 A 1 HETATM 27 O O3 A1H3H . . . B 2 -19.709 5.598 19.123 1 76.44 ? O3 A1H3H 1201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #