data_8RWZ # _model_server_result.job_id -4CvQqSa-xGY-rcpjm5ihw _model_server_result.datetime_utc '2024-10-19 03:38:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rwz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 8RWZ # _exptl.entry_id 8RWZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1004.655 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S},4~{R})-1-[(2~{S})-2-[2-[2-[2-[2-[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]ethanoylamino]ethoxy]ethoxy]ethoxy]ethanoylamino]-3,3-dimethyl-butanoyl]-~{N}-[[4-(4-methyl-2,3-dihydro-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RWZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RWZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O ARG 34 R ARG 46 1_555 I ZN ZN . R ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? metalc ? metalc2 F O ASN 35 R ASN 47 1_555 I ZN ZN . R ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? # _chem_comp.formula 'C49 H62 Cl N9 O8 S2' _chem_comp.formula_weight 1004.655 _chem_comp.id 759 _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S},4~{R})-1-[(2~{S})-2-[2-[2-[2-[2-[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]ethanoylamino]ethoxy]ethoxy]ethoxy]ethanoylamino]-3,3-dimethyl-butanoyl]-~{N}-[[4-(4-methyl-2,3-dihydro-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBZ 759 sing 1 n n CBZ NBI 759 sing 2 n n CBZ CCH 759 doub 3 n n NBI CAV 759 sing 4 n n CAV SBR 759 sing 5 n n SBR CCH 759 sing 6 n n CCH CCF 759 sing 7 n n CCF CAU 759 doub 8 n y CCF CAT 759 sing 9 n y CAU CAQ 759 sing 10 n y CAQ CCA 759 doub 11 n y CAT CAP 759 doub 12 n y CAP CCA 759 sing 13 n y CCA CBC 759 sing 14 n n CBC NBM 759 sing 15 n n NBM C 759 sing 16 n n C O 759 doub 17 n n C CA 759 sing 18 n n CA CB 759 sing 19 n n CA N 759 sing 20 n n CB CG 759 sing 21 n n CG OD1 759 sing 22 n n CG CD2 759 sing 23 n n CD2 N 759 sing 24 n n N CBW 759 sing 25 n n CBW OAK 759 doub 26 n n CBW CCN 759 sing 27 n n CCN CCQ 759 sing 28 n n CCN NBN 759 sing 29 n n CCQ CAF 759 sing 30 n n CCQ CAG 759 sing 31 n n CCQ CAE 759 sing 32 n n NBN CBT 759 sing 33 n n CBT OAH 759 doub 34 n n CBT CBD 759 sing 35 n n CBD OBQ 759 sing 36 n n OBQ CBB 759 sing 37 n n CBB CBA 759 sing 38 n n CBA OBP 759 sing 39 n n OBP CAZ 759 sing 40 n n CAZ CAY 759 sing 41 n n CAY OBO 759 sing 42 n n OBO CAX 759 sing 43 n n CAX CAW 759 sing 44 n n CAW NBL 759 sing 45 n n NBL CBU 759 sing 46 n n CBU OAI 759 doub 47 n n CBU CBE 759 sing 48 n n CBE CCL 759 sing 49 n n CCL NBH 759 sing 50 n n CCL CCG 759 sing 51 n n NBH CBX 759 doub 52 n n CCG NBK 759 doub 53 n y CCG NCP 759 sing 54 n y NBK NBJ 759 sing 55 n y NBJ CCB 759 doub 56 n y CCB CAB 759 sing 57 n n CCB NCP 759 sing 58 n y NCP CCJ 759 sing 59 n n CCJ SBS 759 sing 60 n y CCJ CCI 759 doub 61 n y SBS CCC 759 sing 62 n y CCC CAC 759 sing 63 n n CCC CCD 759 doub 64 n y CCD CAD 759 sing 65 n n CCD CCI 759 sing 66 n y CCI CBX 759 sing 67 n n CBX CCE 759 sing 68 n n CCE CAR 759 doub 69 n y CCE CAS 759 sing 70 n y CAR CAN 759 sing 71 n y CAN CBY 759 doub 72 n y CBY CL1 759 sing 73 n n CBY CAO 759 sing 74 n y CAO CAS 759 doub 75 n y CAA H1 759 sing 76 n n CAA H2 759 sing 77 n n CAA H3 759 sing 78 n n CAV H4 759 sing 79 n n CAV H5 759 sing 80 n n CAU H6 759 sing 81 n n CAQ H7 759 sing 82 n n CAT H8 759 sing 83 n n CAP H9 759 sing 84 n n CBC H10 759 sing 85 n n CBC H11 759 sing 86 n n NBM H12 759 sing 87 n n CA H13 759 sing 88 n n CB H14 759 sing 89 n n CB H15 759 sing 90 n n CG H16 759 sing 91 n n OD1 H17 759 sing 92 n n CD2 H18 759 sing 93 n n CD2 H19 759 sing 94 n n CCN H20 759 sing 95 n n CAF H21 759 sing 96 n n CAF H22 759 sing 97 n n CAF H23 759 sing 98 n n CAG H24 759 sing 99 n n CAG H25 759 sing 100 n n CAG H26 759 sing 101 n n CAE H27 759 sing 102 n n CAE H28 759 sing 103 n n CAE H29 759 sing 104 n n NBN H30 759 sing 105 n n CBD H31 759 sing 106 n n CBD H32 759 sing 107 n n CBB H33 759 sing 108 n n CBB H34 759 sing 109 n n CBA H35 759 sing 110 n n CBA H36 759 sing 111 n n CAZ H37 759 sing 112 n n CAZ H38 759 sing 113 n n CAY H39 759 sing 114 n n CAY H40 759 sing 115 n n CAX H41 759 sing 116 n n CAX H42 759 sing 117 n n CAW H43 759 sing 118 n n CAW H44 759 sing 119 n n NBL H45 759 sing 120 n n CBE H46 759 sing 121 n n CBE H47 759 sing 122 n n CCL H48 759 sing 123 n n CAB H49 759 sing 124 n n CAB H50 759 sing 125 n n CAB H51 759 sing 126 n n CAC H52 759 sing 127 n n CAC H53 759 sing 128 n n CAC H54 759 sing 129 n n CAD H55 759 sing 130 n n CAD H56 759 sing 131 n n CAD H57 759 sing 132 n n CAR H58 759 sing 133 n n CAN H59 759 sing 134 n n CAO H60 759 sing 135 n n CAS H61 759 sing 136 n n NBI H62 759 sing 137 n n # _atom_sites.entry_id 8RWZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 759 A 1 501 501 759 759 . H 8 ZN R 1 301 301 ZN ZN . I 8 ZN R 1 302 302 ZN ZN . J 8 ZN R 1 303 303 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 759 . . . G 7 159.969 178.895 173.722 1 48.69 ? CAA 759 501 A 1 HETATM 2 C CBZ 759 . . . G 7 160.845 180.129 173.458 1 42.06 ? CBZ 759 501 A 1 HETATM 3 N NBI 759 . . . G 7 160.316 181.252 172.921 1 36.86 ? NBI 759 501 A 1 HETATM 4 C CAV 759 . . . G 7 161.169 182.258 172.715 1 32.29 ? CAV 759 501 A 1 HETATM 5 S SBR 759 . . . G 7 162.642 181.754 173.226 1 38.71 ? SBR 759 501 A 1 HETATM 6 C CCH 759 . . . G 7 162.154 180.196 173.716 1 38.55 ? CCH 759 501 A 1 HETATM 7 C CCF 759 . . . G 7 162.943 179.249 174.275 1 39.05 ? CCF 759 501 A 1 HETATM 8 C CAU 759 . . . G 7 163.854 179.647 175.254 1 38.57 ? CAU 759 501 A 1 HETATM 9 C CAQ 759 . . . G 7 164.696 178.723 175.878 1 48.74 ? CAQ 759 501 A 1 HETATM 10 C CAT 759 . . . G 7 162.903 177.883 173.938 1 33.25 ? CAT 759 501 A 1 HETATM 11 C CAP 759 . . . G 7 163.749 176.957 174.568 1 34 ? CAP 759 501 A 1 HETATM 12 C CCA 759 . . . G 7 164.672 177.364 175.543 1 37.89 ? CCA 759 501 A 1 HETATM 13 C CBC 759 . . . G 7 165.502 176.442 176.177 1 32.4 ? CBC 759 501 A 1 HETATM 14 N NBM 759 . . . G 7 166.809 177.077 176.498 1 31.92 ? NBM 759 501 A 1 HETATM 15 C C 759 . . . G 7 167.885 177.062 175.673 1 37.59 ? C 759 501 A 1 HETATM 16 O O 759 . . . G 7 167.901 176.494 174.576 1 33.65 ? O 759 501 A 1 HETATM 17 C CA 759 . . . G 7 169.019 177.777 176.16 1 31.4 ? CA 759 501 A 1 HETATM 18 C CB 759 . . . G 7 168.922 179.248 175.756 1 28.98 ? CB 759 501 A 1 HETATM 19 C CG 759 . . . G 7 170.363 179.704 175.584 1 34.1 ? CG 759 501 A 1 HETATM 20 O OD1 759 . . . G 7 170.923 180.105 176.849 1 29.8 ? OD1 759 501 A 1 HETATM 21 C CD2 759 . . . G 7 171.11 178.477 175.055 1 32.17 ? CD2 759 501 A 1 HETATM 22 N N 759 . . . G 7 170.379 177.311 175.636 1 33.08 ? N 759 501 A 1 HETATM 23 C CBW 759 . . . G 7 170.79 176.036 175.778 1 36.08 ? CBW 759 501 A 1 HETATM 24 O OAK 759 . . . G 7 170.105 175.176 176.334 1 36.09 ? OAK 759 501 A 1 HETATM 25 C CCN 759 . . . G 7 172.205 175.663 175.318 1 36.68 ? CCN 759 501 A 1 HETATM 26 C CCQ 759 . . . G 7 172.276 174.85 173.993 1 39.32 ? CCQ 759 501 A 1 HETATM 27 C CAF 759 . . . G 7 173.684 174.254 173.884 1 33.4 ? CAF 759 501 A 1 HETATM 28 C CAG 759 . . . G 7 171.248 173.714 173.921 1 35.4 ? CAG 759 501 A 1 HETATM 29 C CAE 759 . . . G 7 172.037 175.751 172.781 1 36.87 ? CAE 759 501 A 1 HETATM 30 N NBN 759 . . . G 7 172.673 174.82 176.413 1 40.15 ? NBN 759 501 A 1 HETATM 31 C CBT 759 . . . G 7 173.686 175.102 177.238 1 46.87 ? CBT 759 501 A 1 HETATM 32 O OAH 759 . . . G 7 174.455 176.066 177.129 1 35.6 ? OAH 759 501 A 1 HETATM 33 C CBD 759 . . . G 7 173.87 174.011 178.289 1 41.7 ? CBD 759 501 A 1 HETATM 34 O OBQ 759 . . . G 7 174.083 172.891 177.404 1 51.6 ? OBQ 759 501 A 1 HETATM 35 C CBB 759 . . . G 7 173.721 171.581 177.77 1 46.79 ? CBB 759 501 A 1 HETATM 36 C CBA 759 . . . G 7 172.889 171.052 176.587 1 42.8 ? CBA 759 501 A 1 HETATM 37 O OBP 759 . . . G 7 171.592 170.606 177.026 1 49.72 ? OBP 759 501 A 1 HETATM 38 C CAZ 759 . . . G 7 170.628 171.633 177.15 1 46.34 ? CAZ 759 501 A 1 HETATM 39 C CAY 759 . . . G 7 169.249 170.948 177.172 1 47.65 ? CAY 759 501 A 1 HETATM 40 O OBO 759 . . . G 7 169.176 169.821 176.259 1 46.4 ? OBO 759 501 A 1 HETATM 41 C CAX 759 . . . G 7 168.196 170.013 175.274 1 38.88 ? CAX 759 501 A 1 HETATM 42 C CAW 759 . . . G 7 166.796 169.741 175.857 1 32.89 ? CAW 759 501 A 1 HETATM 43 N NBL 759 . . . G 7 166.757 168.97 177.126 1 45.86 ? NBL 759 501 A 1 HETATM 44 C CBU 759 . . . G 7 166.413 169.488 178.345 1 48.7 ? CBU 759 501 A 1 HETATM 45 O OAI 759 . . . G 7 166.169 170.679 178.551 1 51.57 ? OAI 759 501 A 1 HETATM 46 C CBE 759 . . . G 7 166.363 168.462 179.512 1 48.89 ? CBE 759 501 A 1 HETATM 47 C CCL 759 . . . G 7 166.428 169.142 180.89 1 44.46 ? CCL 759 501 A 1 HETATM 48 N NBH 759 . . . G 7 167.781 169.674 181.137 1 44.81 ? NBH 759 501 A 1 HETATM 49 C CCG 759 . . . G 7 166.121 168.305 181.994 1 50.76 ? CCG 759 501 A 1 HETATM 50 N NBK 759 . . . G 7 165.763 167.019 181.908 1 52.19 ? NBK 759 501 A 1 HETATM 51 N NBJ 759 . . . G 7 165.56 166.567 183.067 1 46.24 ? NBJ 759 501 A 1 HETATM 52 C CCB 759 . . . G 7 165.78 167.546 183.941 1 43.32 ? CCB 759 501 A 1 HETATM 53 C CAB 759 . . . G 7 165.63 167.415 185.456 1 42.32 ? CAB 759 501 A 1 HETATM 54 N NCP 759 . . . G 7 166.147 168.639 183.292 1 47.6 ? NCP 759 501 A 1 HETATM 55 C CCJ 759 . . . G 7 166.45 169.869 183.725 1 44.91 ? CCJ 759 501 A 1 HETATM 56 S SBS 759 . . . G 7 165.627 170.668 185.018 1 39.73 ? SBS 759 501 A 1 HETATM 57 C CCC 759 . . . G 7 166.508 172.031 184.868 1 46.97 ? CCC 759 501 A 1 HETATM 58 C CAC 759 . . . G 7 166.333 173.274 185.754 1 42.8 ? CAC 759 501 A 1 HETATM 59 C CCD 759 . . . G 7 167.396 171.901 183.864 1 45.51 ? CCD 759 501 A 1 HETATM 60 C CAD 759 . . . G 7 168.35 173.058 183.527 1 48.61 ? CAD 759 501 A 1 HETATM 61 C CCI 759 . . . G 7 167.381 170.7 183.224 1 38.18 ? CCI 759 501 A 1 HETATM 62 C CBX 759 . . . G 7 168.19 170.375 182.197 1 35.7 ? CBX 759 501 A 1 HETATM 63 C CCE 759 . . . G 7 169.542 170.713 182.178 1 32.6 ? CCE 759 501 A 1 HETATM 64 C CAR 759 . . . G 7 170.365 170.514 183.285 1 37.56 ? CAR 759 501 A 1 HETATM 65 C CAN 759 . . . G 7 171.718 170.867 183.238 1 34.91 ? CAN 759 501 A 1 HETATM 66 C CBY 759 . . . G 7 172.265 171.412 182.083 1 34.97 ? CBY 759 501 A 1 HETATM 67 CL CL1 759 . . . G 7 173.979 171.874 182.008 1 39.12 ? CL1 759 501 A 1 HETATM 68 C CAO 759 . . . G 7 171.442 171.596 180.98 1 39.61 ? CAO 759 501 A 1 HETATM 69 C CAS 759 . . . G 7 170.093 171.25 181.024 1 36.35 ? CAS 759 501 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 69 #