data_8RXF
#
_model_server_result.job_id            JeHbkG8fIrhJMcLva2ZJeQ 
_model_server_result.datetime_utc      '2024-11-02 19:43:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8rxf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    8RXF 
#
_exptl.entry_id    8RXF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              130.142 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXO-4-METHYLPENTANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8RXF 
_cell.length_a            67.054 
_cell.length_b            67.054 
_cell.length_c            183.074 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8RXF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 244 A HIS 244 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc2 A NE2 HIS 296 A HIS 296 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc3 B ZN ZN . A ZN 501 1_555 C O2 COI . A COI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc4 B ZN ZN . A ZN 501 1_555 C O3 COI . A COI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
#
_chem_comp.formula           'C6 H10 O3' 
_chem_comp.formula_weight    130.142 
_chem_comp.id                COI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXO-4-METHYLPENTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'alpha-ketoisocaproic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 COI doub 70 n n 
C1 O2 COI sing 71 n n 
C1 C2 COI sing 72 n n 
O2 HO2 COI sing 73 n n 
C2 O3 COI doub 74 n n 
C2 C3 COI sing 75 n n 
C3 C4 COI sing 76 n n 
C3 H31 COI sing 77 n n 
C3 H32 COI sing 78 n n 
C4 C5 COI sing 79 n n 
C4 C6 COI sing 80 n n 
C4 H4 COI sing 81 n n 
C5 H51 COI sing 82 n n 
C5 H52 COI sing 83 n n 
C5 H53 COI sing 84 n n 
C6 H61 COI sing 85 n n 
C6 H62 COI sing 86 n n 
C6 H63 COI sing 87 n n 
#
_atom_sites.entry_id                     8RXF 
_atom_sites.fract_transf_matrix[1][1]    0.014913 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014913 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005462 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 501 501 ZN ZN . 
C 3 COI A 1 502 502 COI COI . 
D 4 CL A 1 503 504 CL CL . 
E 5 GOL A 1 504 505 GOL GOL . 
F 6 HOH A 1 601 2 HOH HOH . 
F 6 HOH A 2 602 156 HOH HOH . 
F 6 HOH A 3 603 56 HOH HOH . 
F 6 HOH A 4 604 90 HOH HOH . 
F 6 HOH A 5 605 110 HOH HOH . 
F 6 HOH A 6 606 208 HOH HOH . 
F 6 HOH A 7 607 176 HOH HOH . 
F 6 HOH A 8 608 10 HOH HOH . 
F 6 HOH A 9 609 14 HOH HOH . 
F 6 HOH A 10 610 1 HOH HOH . 
F 6 HOH A 11 611 89 HOH HOH . 
F 6 HOH A 12 612 82 HOH HOH . 
F 6 HOH A 13 613 40 HOH HOH . 
F 6 HOH A 14 614 62 HOH HOH . 
F 6 HOH A 15 615 30 HOH HOH . 
F 6 HOH A 16 616 22 HOH HOH . 
F 6 HOH A 17 617 29 HOH HOH . 
F 6 HOH A 18 618 8 HOH HOH . 
F 6 HOH A 19 619 148 HOH HOH . 
F 6 HOH A 20 620 91 HOH HOH . 
F 6 HOH A 21 621 38 HOH HOH . 
F 6 HOH A 22 622 118 HOH HOH . 
F 6 HOH A 23 623 171 HOH HOH . 
F 6 HOH A 24 624 144 HOH HOH . 
F 6 HOH A 25 625 21 HOH HOH . 
F 6 HOH A 26 626 27 HOH HOH . 
F 6 HOH A 27 627 53 HOH HOH . 
F 6 HOH A 28 628 20 HOH HOH . 
F 6 HOH A 29 629 15 HOH HOH . 
F 6 HOH A 30 630 88 HOH HOH . 
F 6 HOH A 31 631 12 HOH HOH . 
F 6 HOH A 32 632 17 HOH HOH . 
F 6 HOH A 33 633 147 HOH HOH . 
F 6 HOH A 34 634 39 HOH HOH . 
F 6 HOH A 35 635 178 HOH HOH . 
F 6 HOH A 36 636 87 HOH HOH . 
F 6 HOH A 37 637 4 HOH HOH . 
F 6 HOH A 38 638 154 HOH HOH . 
F 6 HOH A 39 639 169 HOH HOH . 
F 6 HOH A 40 640 31 HOH HOH . 
F 6 HOH A 41 641 5 HOH HOH . 
F 6 HOH A 42 642 47 HOH HOH . 
F 6 HOH A 43 643 41 HOH HOH . 
F 6 HOH A 44 644 6 HOH HOH . 
F 6 HOH A 45 645 165 HOH HOH . 
F 6 HOH A 46 646 26 HOH HOH . 
F 6 HOH A 47 647 9 HOH HOH . 
F 6 HOH A 48 648 18 HOH HOH . 
F 6 HOH A 49 649 19 HOH HOH . 
F 6 HOH A 50 650 24 HOH HOH . 
F 6 HOH A 51 651 115 HOH HOH . 
F 6 HOH A 52 652 28 HOH HOH . 
F 6 HOH A 53 653 61 HOH HOH . 
F 6 HOH A 54 654 146 HOH HOH . 
F 6 HOH A 55 655 59 HOH HOH . 
F 6 HOH A 56 656 161 HOH HOH . 
F 6 HOH A 57 657 44 HOH HOH . 
F 6 HOH A 58 658 98 HOH HOH . 
F 6 HOH A 59 659 49 HOH HOH . 
F 6 HOH A 60 660 32 HOH HOH . 
F 6 HOH A 61 661 50 HOH HOH . 
F 6 HOH A 62 662 13 HOH HOH . 
F 6 HOH A 63 663 157 HOH HOH . 
F 6 HOH A 64 664 202 HOH HOH . 
F 6 HOH A 65 665 33 HOH HOH . 
F 6 HOH A 66 666 190 HOH HOH . 
F 6 HOH A 67 667 55 HOH HOH . 
F 6 HOH A 68 668 42 HOH HOH . 
F 6 HOH A 69 669 132 HOH HOH . 
F 6 HOH A 70 670 11 HOH HOH . 
F 6 HOH A 71 671 124 HOH HOH . 
F 6 HOH A 72 672 95 HOH HOH . 
F 6 HOH A 73 673 155 HOH HOH . 
F 6 HOH A 74 674 198 HOH HOH . 
F 6 HOH A 75 675 36 HOH HOH . 
F 6 HOH A 76 676 149 HOH HOH . 
F 6 HOH A 77 677 103 HOH HOH . 
F 6 HOH A 78 678 73 HOH HOH . 
F 6 HOH A 79 679 45 HOH HOH . 
F 6 HOH A 80 680 145 HOH HOH . 
F 6 HOH A 81 681 60 HOH HOH . 
F 6 HOH A 82 682 97 HOH HOH . 
F 6 HOH A 83 683 112 HOH HOH . 
F 6 HOH A 84 684 102 HOH HOH . 
F 6 HOH A 85 685 51 HOH HOH . 
F 6 HOH A 86 686 48 HOH HOH . 
F 6 HOH A 87 687 86 HOH HOH . 
F 6 HOH A 88 688 34 HOH HOH . 
F 6 HOH A 89 689 99 HOH HOH . 
F 6 HOH A 90 690 3 HOH HOH . 
F 6 HOH A 91 691 46 HOH HOH . 
F 6 HOH A 92 692 121 HOH HOH . 
F 6 HOH A 93 693 52 HOH HOH . 
F 6 HOH A 94 694 108 HOH HOH . 
F 6 HOH A 95 695 58 HOH HOH . 
F 6 HOH A 96 696 63 HOH HOH . 
F 6 HOH A 97 697 35 HOH HOH . 
F 6 HOH A 98 698 16 HOH HOH . 
F 6 HOH A 99 699 183 HOH HOH . 
F 6 HOH A 100 700 203 HOH HOH . 
F 6 HOH A 101 701 168 HOH HOH . 
F 6 HOH A 102 702 70 HOH HOH . 
F 6 HOH A 103 703 64 HOH HOH . 
F 6 HOH A 104 704 93 HOH HOH . 
F 6 HOH A 105 705 37 HOH HOH . 
F 6 HOH A 106 706 75 HOH HOH . 
F 6 HOH A 107 707 92 HOH HOH . 
F 6 HOH A 108 708 84 HOH HOH . 
F 6 HOH A 109 709 94 HOH HOH . 
F 6 HOH A 110 710 151 HOH HOH . 
F 6 HOH A 111 711 25 HOH HOH . 
F 6 HOH A 112 712 172 HOH HOH . 
F 6 HOH A 113 713 43 HOH HOH . 
F 6 HOH A 114 714 23 HOH HOH . 
F 6 HOH A 115 715 57 HOH HOH . 
F 6 HOH A 116 716 69 HOH HOH . 
F 6 HOH A 117 717 83 HOH HOH . 
F 6 HOH A 118 718 164 HOH HOH . 
F 6 HOH A 119 719 175 HOH HOH . 
F 6 HOH A 120 720 7 HOH HOH . 
F 6 HOH A 121 721 163 HOH HOH . 
F 6 HOH A 122 722 74 HOH HOH . 
F 6 HOH A 123 723 162 HOH HOH . 
F 6 HOH A 124 724 140 HOH HOH . 
F 6 HOH A 125 725 71 HOH HOH . 
F 6 HOH A 126 726 186 HOH HOH . 
F 6 HOH A 127 727 130 HOH HOH . 
F 6 HOH A 128 728 125 HOH HOH . 
F 6 HOH A 129 729 182 HOH HOH . 
F 6 HOH A 130 730 153 HOH HOH . 
F 6 HOH A 131 731 137 HOH HOH . 
F 6 HOH A 132 732 66 HOH HOH . 
F 6 HOH A 133 733 54 HOH HOH . 
F 6 HOH A 134 734 67 HOH HOH . 
F 6 HOH A 135 735 80 HOH HOH . 
F 6 HOH A 136 736 193 HOH HOH . 
F 6 HOH A 137 737 126 HOH HOH . 
F 6 HOH A 138 738 76 HOH HOH . 
F 6 HOH A 139 739 117 HOH HOH . 
F 6 HOH A 140 740 181 HOH HOH . 
F 6 HOH A 141 741 177 HOH HOH . 
F 6 HOH A 142 742 206 HOH HOH . 
F 6 HOH A 143 743 106 HOH HOH . 
F 6 HOH A 144 744 120 HOH HOH . 
F 6 HOH A 145 745 205 HOH HOH . 
F 6 HOH A 146 746 166 HOH HOH . 
F 6 HOH A 147 747 159 HOH HOH . 
F 6 HOH A 148 748 210 HOH HOH . 
F 6 HOH A 149 749 68 HOH HOH . 
F 6 HOH A 150 750 78 HOH HOH . 
F 6 HOH A 151 751 77 HOH HOH . 
F 6 HOH A 152 752 143 HOH HOH . 
F 6 HOH A 153 753 195 HOH HOH . 
F 6 HOH A 154 754 105 HOH HOH . 
F 6 HOH A 155 755 111 HOH HOH . 
F 6 HOH A 156 756 152 HOH HOH . 
F 6 HOH A 157 757 85 HOH HOH . 
F 6 HOH A 158 758 72 HOH HOH . 
F 6 HOH A 159 759 138 HOH HOH . 
F 6 HOH A 160 760 135 HOH HOH . 
F 6 HOH A 161 761 179 HOH HOH . 
F 6 HOH A 162 762 188 HOH HOH . 
F 6 HOH A 163 763 65 HOH HOH . 
F 6 HOH A 164 764 170 HOH HOH . 
F 6 HOH A 165 765 167 HOH HOH . 
F 6 HOH A 166 766 104 HOH HOH . 
F 6 HOH A 167 767 133 HOH HOH . 
F 6 HOH A 168 768 114 HOH HOH . 
F 6 HOH A 169 769 79 HOH HOH . 
F 6 HOH A 170 770 123 HOH HOH . 
F 6 HOH A 171 771 101 HOH HOH . 
F 6 HOH A 172 772 136 HOH HOH . 
F 6 HOH A 173 773 116 HOH HOH . 
F 6 HOH A 174 774 158 HOH HOH . 
F 6 HOH A 175 775 100 HOH HOH . 
F 6 HOH A 176 776 194 HOH HOH . 
F 6 HOH A 177 777 119 HOH HOH . 
F 6 HOH A 178 778 209 HOH HOH . 
F 6 HOH A 179 779 196 HOH HOH . 
F 6 HOH A 180 780 134 HOH HOH . 
F 6 HOH A 181 781 142 HOH HOH . 
F 6 HOH A 182 782 187 HOH HOH . 
F 6 HOH A 183 783 199 HOH HOH . 
F 6 HOH A 184 784 113 HOH HOH . 
F 6 HOH A 185 785 184 HOH HOH . 
F 6 HOH A 186 786 122 HOH HOH . 
F 6 HOH A 187 787 173 HOH HOH . 
F 6 HOH A 188 788 204 HOH HOH . 
F 6 HOH A 189 789 192 HOH HOH . 
F 6 HOH A 190 790 129 HOH HOH . 
F 6 HOH A 191 791 109 HOH HOH . 
F 6 HOH A 192 792 139 HOH HOH . 
F 6 HOH A 193 793 150 HOH HOH . 
F 6 HOH A 194 794 127 HOH HOH . 
F 6 HOH A 195 795 197 HOH HOH . 
F 6 HOH A 196 796 201 HOH HOH . 
F 6 HOH A 197 797 180 HOH HOH . 
F 6 HOH A 198 798 128 HOH HOH . 
F 6 HOH A 199 799 81 HOH HOH . 
F 6 HOH A 200 800 96 HOH HOH . 
F 6 HOH A 201 801 207 HOH HOH . 
F 6 HOH A 202 802 200 HOH HOH . 
F 6 HOH A 203 803 185 HOH HOH . 
F 6 HOH A 204 804 189 HOH HOH . 
F 6 HOH A 205 805 160 HOH HOH . 
F 6 HOH A 206 806 141 HOH HOH . 
F 6 HOH A 207 807 174 HOH HOH . 
F 6 HOH A 208 808 107 HOH HOH . 
F 6 HOH A 209 809 131 HOH HOH . 
F 6 HOH A 210 810 191 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 COI . . . C 3 34.035 15.655 -8.247 1 63.46 ? C1 COI 502 A 1 
HETATM 2 O O1 COI . . . C 3 33.53 16.078 -7.185 1 63.13 ? O1 COI 502 A 1 
HETATM 3 O O2 COI . . . C 3 34.635 16.354 -9.102 1 63.16 ? O2 COI 502 A 1 
HETATM 4 C C2 COI . . . C 3 33.901 14.182 -8.499 1 64.17 ? C2 COI 502 A 1 
HETATM 5 O O3 COI . . . C 3 34.17 13.735 -9.614 1 64.47 ? O3 COI 502 A 1 
HETATM 6 C C3 COI . . . C 3 33.415 13.289 -7.379 1 64 ? C3 COI 502 A 1 
HETATM 7 C C4 COI . . . C 3 32.528 12.141 -7.859 1 63.86 ? C4 COI 502 A 1 
HETATM 8 C C5 COI . . . C 3 31.227 12.662 -8.449 1 63.9 ? C5 COI 502 A 1 
HETATM 9 C C6 COI . . . C 3 32.267 11.147 -6.747 1 63.55 ? C6 COI 502 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           361 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           9 
#