data_8RXF # _model_server_result.job_id JeHbkG8fIrhJMcLva2ZJeQ _model_server_result.datetime_utc '2024-11-02 19:43:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rxf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8RXF # _exptl.entry_id 8RXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 130.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXO-4-METHYLPENTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RXF _cell.length_a 67.054 _cell.length_b 67.054 _cell.length_c 183.074 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 244 A HIS 244 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A NE2 HIS 296 A HIS 296 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc3 B ZN ZN . A ZN 501 1_555 C O2 COI . A COI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc4 B ZN ZN . A ZN 501 1_555 C O3 COI . A COI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? # _chem_comp.formula 'C6 H10 O3' _chem_comp.formula_weight 130.142 _chem_comp.id COI _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXO-4-METHYLPENTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'alpha-ketoisocaproic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 COI doub 70 n n C1 O2 COI sing 71 n n C1 C2 COI sing 72 n n O2 HO2 COI sing 73 n n C2 O3 COI doub 74 n n C2 C3 COI sing 75 n n C3 C4 COI sing 76 n n C3 H31 COI sing 77 n n C3 H32 COI sing 78 n n C4 C5 COI sing 79 n n C4 C6 COI sing 80 n n C4 H4 COI sing 81 n n C5 H51 COI sing 82 n n C5 H52 COI sing 83 n n C5 H53 COI sing 84 n n C6 H61 COI sing 85 n n C6 H62 COI sing 86 n n C6 H63 COI sing 87 n n # _atom_sites.entry_id 8RXF _atom_sites.fract_transf_matrix[1][1] 0.014913 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 501 ZN ZN . C 3 COI A 1 502 502 COI COI . D 4 CL A 1 503 504 CL CL . E 5 GOL A 1 504 505 GOL GOL . F 6 HOH A 1 601 2 HOH HOH . F 6 HOH A 2 602 156 HOH HOH . F 6 HOH A 3 603 56 HOH HOH . F 6 HOH A 4 604 90 HOH HOH . F 6 HOH A 5 605 110 HOH HOH . F 6 HOH A 6 606 208 HOH HOH . F 6 HOH A 7 607 176 HOH HOH . F 6 HOH A 8 608 10 HOH HOH . F 6 HOH A 9 609 14 HOH HOH . F 6 HOH A 10 610 1 HOH HOH . F 6 HOH A 11 611 89 HOH HOH . F 6 HOH A 12 612 82 HOH HOH . F 6 HOH A 13 613 40 HOH HOH . F 6 HOH A 14 614 62 HOH HOH . F 6 HOH A 15 615 30 HOH HOH . F 6 HOH A 16 616 22 HOH HOH . F 6 HOH A 17 617 29 HOH HOH . F 6 HOH A 18 618 8 HOH HOH . F 6 HOH A 19 619 148 HOH HOH . F 6 HOH A 20 620 91 HOH HOH . F 6 HOH A 21 621 38 HOH HOH . F 6 HOH A 22 622 118 HOH HOH . F 6 HOH A 23 623 171 HOH HOH . F 6 HOH A 24 624 144 HOH HOH . F 6 HOH A 25 625 21 HOH HOH . F 6 HOH A 26 626 27 HOH HOH . F 6 HOH A 27 627 53 HOH HOH . F 6 HOH A 28 628 20 HOH HOH . F 6 HOH A 29 629 15 HOH HOH . F 6 HOH A 30 630 88 HOH HOH . F 6 HOH A 31 631 12 HOH HOH . F 6 HOH A 32 632 17 HOH HOH . F 6 HOH A 33 633 147 HOH HOH . F 6 HOH A 34 634 39 HOH HOH . F 6 HOH A 35 635 178 HOH HOH . F 6 HOH A 36 636 87 HOH HOH . F 6 HOH A 37 637 4 HOH HOH . F 6 HOH A 38 638 154 HOH HOH . F 6 HOH A 39 639 169 HOH HOH . F 6 HOH A 40 640 31 HOH HOH . F 6 HOH A 41 641 5 HOH HOH . F 6 HOH A 42 642 47 HOH HOH . F 6 HOH A 43 643 41 HOH HOH . F 6 HOH A 44 644 6 HOH HOH . F 6 HOH A 45 645 165 HOH HOH . F 6 HOH A 46 646 26 HOH HOH . F 6 HOH A 47 647 9 HOH HOH . F 6 HOH A 48 648 18 HOH HOH . F 6 HOH A 49 649 19 HOH HOH . F 6 HOH A 50 650 24 HOH HOH . F 6 HOH A 51 651 115 HOH HOH . F 6 HOH A 52 652 28 HOH HOH . F 6 HOH A 53 653 61 HOH HOH . F 6 HOH A 54 654 146 HOH HOH . F 6 HOH A 55 655 59 HOH HOH . F 6 HOH A 56 656 161 HOH HOH . F 6 HOH A 57 657 44 HOH HOH . F 6 HOH A 58 658 98 HOH HOH . F 6 HOH A 59 659 49 HOH HOH . F 6 HOH A 60 660 32 HOH HOH . F 6 HOH A 61 661 50 HOH HOH . F 6 HOH A 62 662 13 HOH HOH . F 6 HOH A 63 663 157 HOH HOH . F 6 HOH A 64 664 202 HOH HOH . F 6 HOH A 65 665 33 HOH HOH . F 6 HOH A 66 666 190 HOH HOH . F 6 HOH A 67 667 55 HOH HOH . F 6 HOH A 68 668 42 HOH HOH . F 6 HOH A 69 669 132 HOH HOH . F 6 HOH A 70 670 11 HOH HOH . F 6 HOH A 71 671 124 HOH HOH . F 6 HOH A 72 672 95 HOH HOH . F 6 HOH A 73 673 155 HOH HOH . F 6 HOH A 74 674 198 HOH HOH . F 6 HOH A 75 675 36 HOH HOH . F 6 HOH A 76 676 149 HOH HOH . F 6 HOH A 77 677 103 HOH HOH . F 6 HOH A 78 678 73 HOH HOH . F 6 HOH A 79 679 45 HOH HOH . F 6 HOH A 80 680 145 HOH HOH . F 6 HOH A 81 681 60 HOH HOH . F 6 HOH A 82 682 97 HOH HOH . F 6 HOH A 83 683 112 HOH HOH . F 6 HOH A 84 684 102 HOH HOH . F 6 HOH A 85 685 51 HOH HOH . F 6 HOH A 86 686 48 HOH HOH . F 6 HOH A 87 687 86 HOH HOH . F 6 HOH A 88 688 34 HOH HOH . F 6 HOH A 89 689 99 HOH HOH . F 6 HOH A 90 690 3 HOH HOH . F 6 HOH A 91 691 46 HOH HOH . F 6 HOH A 92 692 121 HOH HOH . F 6 HOH A 93 693 52 HOH HOH . F 6 HOH A 94 694 108 HOH HOH . F 6 HOH A 95 695 58 HOH HOH . F 6 HOH A 96 696 63 HOH HOH . F 6 HOH A 97 697 35 HOH HOH . F 6 HOH A 98 698 16 HOH HOH . F 6 HOH A 99 699 183 HOH HOH . F 6 HOH A 100 700 203 HOH HOH . F 6 HOH A 101 701 168 HOH HOH . F 6 HOH A 102 702 70 HOH HOH . F 6 HOH A 103 703 64 HOH HOH . F 6 HOH A 104 704 93 HOH HOH . F 6 HOH A 105 705 37 HOH HOH . F 6 HOH A 106 706 75 HOH HOH . F 6 HOH A 107 707 92 HOH HOH . F 6 HOH A 108 708 84 HOH HOH . F 6 HOH A 109 709 94 HOH HOH . F 6 HOH A 110 710 151 HOH HOH . F 6 HOH A 111 711 25 HOH HOH . F 6 HOH A 112 712 172 HOH HOH . F 6 HOH A 113 713 43 HOH HOH . F 6 HOH A 114 714 23 HOH HOH . F 6 HOH A 115 715 57 HOH HOH . F 6 HOH A 116 716 69 HOH HOH . F 6 HOH A 117 717 83 HOH HOH . F 6 HOH A 118 718 164 HOH HOH . F 6 HOH A 119 719 175 HOH HOH . F 6 HOH A 120 720 7 HOH HOH . F 6 HOH A 121 721 163 HOH HOH . F 6 HOH A 122 722 74 HOH HOH . F 6 HOH A 123 723 162 HOH HOH . F 6 HOH A 124 724 140 HOH HOH . F 6 HOH A 125 725 71 HOH HOH . F 6 HOH A 126 726 186 HOH HOH . F 6 HOH A 127 727 130 HOH HOH . F 6 HOH A 128 728 125 HOH HOH . F 6 HOH A 129 729 182 HOH HOH . F 6 HOH A 130 730 153 HOH HOH . F 6 HOH A 131 731 137 HOH HOH . F 6 HOH A 132 732 66 HOH HOH . F 6 HOH A 133 733 54 HOH HOH . F 6 HOH A 134 734 67 HOH HOH . F 6 HOH A 135 735 80 HOH HOH . F 6 HOH A 136 736 193 HOH HOH . F 6 HOH A 137 737 126 HOH HOH . F 6 HOH A 138 738 76 HOH HOH . F 6 HOH A 139 739 117 HOH HOH . F 6 HOH A 140 740 181 HOH HOH . F 6 HOH A 141 741 177 HOH HOH . F 6 HOH A 142 742 206 HOH HOH . F 6 HOH A 143 743 106 HOH HOH . F 6 HOH A 144 744 120 HOH HOH . F 6 HOH A 145 745 205 HOH HOH . F 6 HOH A 146 746 166 HOH HOH . F 6 HOH A 147 747 159 HOH HOH . F 6 HOH A 148 748 210 HOH HOH . F 6 HOH A 149 749 68 HOH HOH . F 6 HOH A 150 750 78 HOH HOH . F 6 HOH A 151 751 77 HOH HOH . F 6 HOH A 152 752 143 HOH HOH . F 6 HOH A 153 753 195 HOH HOH . F 6 HOH A 154 754 105 HOH HOH . F 6 HOH A 155 755 111 HOH HOH . F 6 HOH A 156 756 152 HOH HOH . F 6 HOH A 157 757 85 HOH HOH . F 6 HOH A 158 758 72 HOH HOH . F 6 HOH A 159 759 138 HOH HOH . F 6 HOH A 160 760 135 HOH HOH . F 6 HOH A 161 761 179 HOH HOH . F 6 HOH A 162 762 188 HOH HOH . F 6 HOH A 163 763 65 HOH HOH . F 6 HOH A 164 764 170 HOH HOH . F 6 HOH A 165 765 167 HOH HOH . F 6 HOH A 166 766 104 HOH HOH . F 6 HOH A 167 767 133 HOH HOH . F 6 HOH A 168 768 114 HOH HOH . F 6 HOH A 169 769 79 HOH HOH . F 6 HOH A 170 770 123 HOH HOH . F 6 HOH A 171 771 101 HOH HOH . F 6 HOH A 172 772 136 HOH HOH . F 6 HOH A 173 773 116 HOH HOH . F 6 HOH A 174 774 158 HOH HOH . F 6 HOH A 175 775 100 HOH HOH . F 6 HOH A 176 776 194 HOH HOH . F 6 HOH A 177 777 119 HOH HOH . F 6 HOH A 178 778 209 HOH HOH . F 6 HOH A 179 779 196 HOH HOH . F 6 HOH A 180 780 134 HOH HOH . F 6 HOH A 181 781 142 HOH HOH . F 6 HOH A 182 782 187 HOH HOH . F 6 HOH A 183 783 199 HOH HOH . F 6 HOH A 184 784 113 HOH HOH . F 6 HOH A 185 785 184 HOH HOH . F 6 HOH A 186 786 122 HOH HOH . F 6 HOH A 187 787 173 HOH HOH . F 6 HOH A 188 788 204 HOH HOH . F 6 HOH A 189 789 192 HOH HOH . F 6 HOH A 190 790 129 HOH HOH . F 6 HOH A 191 791 109 HOH HOH . F 6 HOH A 192 792 139 HOH HOH . F 6 HOH A 193 793 150 HOH HOH . F 6 HOH A 194 794 127 HOH HOH . F 6 HOH A 195 795 197 HOH HOH . F 6 HOH A 196 796 201 HOH HOH . F 6 HOH A 197 797 180 HOH HOH . F 6 HOH A 198 798 128 HOH HOH . F 6 HOH A 199 799 81 HOH HOH . F 6 HOH A 200 800 96 HOH HOH . F 6 HOH A 201 801 207 HOH HOH . F 6 HOH A 202 802 200 HOH HOH . F 6 HOH A 203 803 185 HOH HOH . F 6 HOH A 204 804 189 HOH HOH . F 6 HOH A 205 805 160 HOH HOH . F 6 HOH A 206 806 141 HOH HOH . F 6 HOH A 207 807 174 HOH HOH . F 6 HOH A 208 808 107 HOH HOH . F 6 HOH A 209 809 131 HOH HOH . F 6 HOH A 210 810 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 COI . . . C 3 34.035 15.655 -8.247 1 63.46 ? C1 COI 502 A 1 HETATM 2 O O1 COI . . . C 3 33.53 16.078 -7.185 1 63.13 ? O1 COI 502 A 1 HETATM 3 O O2 COI . . . C 3 34.635 16.354 -9.102 1 63.16 ? O2 COI 502 A 1 HETATM 4 C C2 COI . . . C 3 33.901 14.182 -8.499 1 64.17 ? C2 COI 502 A 1 HETATM 5 O O3 COI . . . C 3 34.17 13.735 -9.614 1 64.47 ? O3 COI 502 A 1 HETATM 6 C C3 COI . . . C 3 33.415 13.289 -7.379 1 64 ? C3 COI 502 A 1 HETATM 7 C C4 COI . . . C 3 32.528 12.141 -7.859 1 63.86 ? C4 COI 502 A 1 HETATM 8 C C5 COI . . . C 3 31.227 12.662 -8.449 1 63.9 ? C5 COI 502 A 1 HETATM 9 C C6 COI . . . C 3 32.267 11.147 -6.747 1 63.55 ? C6 COI 502 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #