data_8RXL # _model_server_result.job_id lyMgAsdXspJIFKyyA7hong _model_server_result.datetime_utc '2025-06-30 05:05:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8RXL # _exptl.entry_id 8RXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.51 _cell.angle_gamma 90 _cell.entry_id 8RXL _cell.length_a 122.922 _cell.length_b 61.651 _cell.length_c 80.111 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 172 n n C1 C2 GOL sing 173 n n C1 H11 GOL sing 174 n n C1 H12 GOL sing 175 n n O1 HO1 GOL sing 176 n n C2 O2 GOL sing 177 n n C2 C3 GOL sing 178 n n C2 H2 GOL sing 179 n n O2 HO2 GOL sing 180 n n C3 O3 GOL sing 181 n n C3 H31 GOL sing 182 n n C3 H32 GOL sing 183 n n O3 HO3 GOL sing 184 n n # _atom_sites.entry_id 8RXL _atom_sites.fract_transf_matrix[1][1] 0.008135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004236 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1H3Z B 1 501 501 A1H3Z LIG . D 3 GOL B 1 502 601 GOL GOL . E 2 A1H3Z A 1 501 501 A1H3Z LIG . F 4 HOH B 1 601 5 HOH HOH . F 4 HOH B 2 602 1 HOH HOH . F 4 HOH B 3 603 15 HOH HOH . F 4 HOH B 4 604 3 HOH HOH . F 4 HOH B 5 605 9 HOH HOH . F 4 HOH B 6 606 11 HOH HOH . F 4 HOH B 7 607 16 HOH HOH . F 4 HOH B 8 608 18 HOH HOH . F 4 HOH B 9 609 12 HOH HOH . F 4 HOH B 10 610 2 HOH HOH . G 4 HOH A 1 601 4 HOH HOH . G 4 HOH A 2 602 23 HOH HOH . G 4 HOH A 3 603 14 HOH HOH . G 4 HOH A 4 604 21 HOH HOH . G 4 HOH A 5 605 22 HOH HOH . G 4 HOH A 6 606 24 HOH HOH . G 4 HOH A 7 607 13 HOH HOH . G 4 HOH A 8 608 20 HOH HOH . G 4 HOH A 9 609 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -38.147 -3.876 23.812 1 84.5 ? C1 GOL 502 B 1 HETATM 2 O O1 GOL . . . D 3 -38.162 -5.112 24.583 1 72.72 ? O1 GOL 502 B 1 HETATM 3 C C2 GOL . . . D 3 -36.76 -3.251 23.54 1 87.85 ? C2 GOL 502 B 1 HETATM 4 O O2 GOL . . . D 3 -35.781 -3.748 24.485 1 90.98 ? O2 GOL 502 B 1 HETATM 5 C C3 GOL . . . D 3 -36.868 -1.707 23.608 1 91.18 ? C3 GOL 502 B 1 HETATM 6 O O3 GOL . . . D 3 -35.764 -0.955 23.052 1 84.09 ? O3 GOL 502 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #