data_8RZ7 # _model_server_result.job_id FKnvX7JB3hwV3K-1Pj6EiA _model_server_result.datetime_utc '2025-02-28 06:53:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2000}' # _entry.id 8RZ7 # _exptl.entry_id 8RZ7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8RZ7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 676 A SER 676 1_555 F MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc2 E O1B ADP . A ADP 2000 1_555 F MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc3 B OG SER 903 B SER 903 1_555 H MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc4 G O1B ADP . B ADP 2000 1_555 H MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc5 G O3B ADP . B ADP 2000 1_555 H MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? hydrog WATSON-CRICK hydrog1 C N3 DT 22 C DT 22 1_555 D N1 DA 39 D DA 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C O4 DT 22 C DT 22 1_555 D N6 DA 39 D DA 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C N3 DC 23 C DC 23 1_555 D N1 DG 38 D DG 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N4 DC 23 C DC 23 1_555 D O6 DG 38 D DG 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O2 DC 23 C DC 23 1_555 D N2 DG 38 D DG 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N1 DG 24 C DG 24 1_555 D N3 DC 37 D DC 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N2 DG 24 C DG 24 1_555 D O2 DC 37 D DC 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O6 DG 24 C DG 24 1_555 D N4 DC 37 D DC 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N1 DA 25 C DA 25 1_555 D N3 DT 36 D DT 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N6 DA 25 C DA 25 1_555 D O4 DT 36 D DT 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N1 DG 26 C DG 26 1_555 D N3 DC 35 D DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N2 DG 26 C DG 26 1_555 D O2 DC 35 D DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C O6 DG 26 C DG 26 1_555 D N4 DC 35 D DC 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N1 DG 27 C DG 27 1_555 D N3 DC 34 D DC 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N2 DG 27 C DG 27 1_555 D O2 DC 34 D DC 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C O6 DG 27 C DG 27 1_555 D N4 DC 34 D DC 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N1 DA 28 C DA 28 1_555 D N3 DT 33 D DT 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N6 DA 28 C DA 28 1_555 D O4 DT 33 D DT 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N3 DT 29 C DT 29 1_555 D N1 DA 32 D DA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C O4 DT 29 C DT 29 1_555 D N6 DA 32 D DA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N1 DG 38 C DG 38 1_555 D N3 DC 29 D DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N2 DG 38 C DG 38 1_555 D O2 DC 29 D DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C O6 DG 38 C DG 38 1_555 D N4 DC 29 D DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N3 DC 39 C DC 39 1_555 D N1 DG 28 D DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N4 DC 39 C DC 39 1_555 D O6 DG 28 D DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C O2 DC 39 C DC 39 1_555 D N2 DG 28 D DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N3 DT 40 C DT 40 1_555 D N1 DA 27 D DA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C O4 DT 40 C DT 40 1_555 D N6 DA 27 D DA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C N3 DC 41 C DC 41 1_555 D N1 DG 26 D DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N4 DC 41 C DC 41 1_555 D O6 DG 26 D DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C O2 DC 41 C DC 41 1_555 D N2 DG 26 D DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C N1 DG 42 C DG 42 1_555 D N3 DC 25 D DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C N2 DG 42 C DG 42 1_555 D O2 DC 25 D DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C O6 DG 42 C DG 42 1_555 D N4 DC 25 D DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C N1 DG 43 C DG 43 1_555 D N3 DC 24 D DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C N2 DG 43 C DG 43 1_555 D O2 DC 24 D DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C O6 DG 43 C DG 43 1_555 D N4 DC 24 D DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C N3 DT 44 C DT 44 1_555 D N1 DA 23 D DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 C O4 DT 44 C DT 44 1_555 D N6 DA 23 D DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 C N1 DG 45 C DG 45 1_555 D N3 DC 22 D DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 C N2 DG 45 C DG 45 1_555 D O2 DC 22 D DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 C O6 DG 45 C DG 45 1_555 D N4 DC 22 D DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 C N3 DC 46 C DC 46 1_555 D N1 DG 21 D DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 C N4 DC 46 C DC 46 1_555 D O6 DG 21 D DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 C O2 DC 46 C DC 46 1_555 D N2 DG 21 D DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 C N1 DA 47 C DA 47 1_555 D N3 DT 20 D DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 C N6 DA 47 C DA 47 1_555 D O4 DT 20 D DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 8RZ7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ADP A 1 2000 2000 ADP ADP . F 6 MG A 1 2001 2001 MG MG . G 5 ADP B 1 2000 2000 ADP ADP . H 6 MG B 1 2001 2001 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . G 5 150.672 127.652 164.404 1 63.21 ? PB ADP 2000 B 1 HETATM 2 O O1B ADP . . . G 5 149.781 128.116 163.267 1 62.58 ? O1B ADP 2000 B 1 HETATM 3 O O2B ADP . . . G 5 150.414 128.407 165.688 1 66.33 ? O2B ADP 2000 B 1 HETATM 4 O O3B ADP . . . G 5 150.653 126.15 164.593 1 62.94 ? O3B ADP 2000 B 1 HETATM 5 P PA ADP . . . G 5 153.15 127.046 163.147 1 45.92 ? PA ADP 2000 B 1 HETATM 6 O O1A ADP . . . G 5 152.543 126.837 161.801 1 50.54 ? O1A ADP 2000 B 1 HETATM 7 O O2A ADP . . . G 5 153.403 125.881 164.031 1 43.72 ? O2A ADP 2000 B 1 HETATM 8 O O3A ADP . . . G 5 152.179 128.012 163.968 1 54.18 ? O3A ADP 2000 B 1 HETATM 9 O O5' ADP . . . G 5 154.497 127.878 162.95 1 45.54 ? O5' ADP 2000 B 1 HETATM 10 C C5' ADP . . . G 5 155.082 127.783 161.631 1 42.42 ? C5' ADP 2000 B 1 HETATM 11 C C4' ADP . . . G 5 156.504 128.28 161.674 1 44.07 ? C4' ADP 2000 B 1 HETATM 12 O O4' ADP . . . G 5 157.36 127.226 162.169 1 43.89 ? O4' ADP 2000 B 1 HETATM 13 C C3' ADP . . . G 5 157.089 128.738 160.336 1 45.41 ? C3' ADP 2000 B 1 HETATM 14 O O3' ADP . . . G 5 157.464 130.107 160.433 1 48.95 ? O3' ADP 2000 B 1 HETATM 15 C C2' ADP . . . G 5 158.28 127.817 160.056 1 43.43 ? C2' ADP 2000 B 1 HETATM 16 O O2' ADP . . . G 5 159.444 128.561 159.778 1 46.93 ? O2' ADP 2000 B 1 HETATM 17 C C1' ADP . . . G 5 158.477 127.019 161.338 1 43.54 ? C1' ADP 2000 B 1 HETATM 18 N N9 ADP . . . G 5 158.596 125.585 161.101 1 46.62 ? N9 ADP 2000 B 1 HETATM 19 C C8 ADP . . . G 5 157.635 124.638 161.346 1 51.72 ? C8 ADP 2000 B 1 HETATM 20 N N7 ADP . . . G 5 157.995 123.421 161.029 1 49 ? N7 ADP 2000 B 1 HETATM 21 C C5 ADP . . . G 5 159.283 123.569 160.551 1 45.67 ? C5 ADP 2000 B 1 HETATM 22 C C6 ADP . . . G 5 160.214 122.642 160.053 1 50.52 ? C6 ADP 2000 B 1 HETATM 23 N N6 ADP . . . G 5 159.974 121.34 159.954 1 52.81 ? N6 ADP 2000 B 1 HETATM 24 N N1 ADP . . . G 5 161.42 123.115 159.656 1 58.44 ? N1 ADP 2000 B 1 HETATM 25 C C2 ADP . . . G 5 161.66 124.43 159.77 1 60.87 ? C2 ADP 2000 B 1 HETATM 26 N N3 ADP . . . G 5 160.85 125.394 160.202 1 54.03 ? N3 ADP 2000 B 1 HETATM 27 C C4 ADP . . . G 5 159.666 124.895 160.591 1 46.19 ? C4 ADP 2000 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #