data_8RZA # _model_server_result.job_id 4xithNyplBxd9k6cw2V9Gg _model_server_result.datetime_utc '2024-11-07 05:48:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rza # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 8RZA # _exptl.entry_id 8RZA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8RZA _cell.length_a 120.62 _cell.length_b 120.62 _cell.length_c 93.84 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RZA _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall 'P 3 2"' _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,C,D,E,F,G,H,I,J,K,L 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 93.84 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 364 A ASP 364 1_555 H MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc2 A OD1 ASN 404 A ASN 404 1_555 I MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc3 A OD1 ASP 420 A ASP 420 1_555 I MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc4 A OD1 ASP 424 A ASP 424 1_555 I MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc5 A OD2 ASP 437 A ASP 437 1_555 H MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc6 H MG MG . A MG 505 1_555 C OP2 U 3 B U 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc7 I MG MG . A MG 506 1_555 J O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc8 I MG MG . A MG 506 1_555 C O5' U 3 B U 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 263 n n O1 HO1 PG4 sing 264 n n C1 C2 PG4 sing 265 n n C1 H11 PG4 sing 266 n n C1 H12 PG4 sing 267 n n C2 O2 PG4 sing 268 n n C2 H21 PG4 sing 269 n n C2 H22 PG4 sing 270 n n O2 C3 PG4 sing 271 n n C3 C4 PG4 sing 272 n n C3 H31 PG4 sing 273 n n C3 H32 PG4 sing 274 n n C4 O3 PG4 sing 275 n n C4 H41 PG4 sing 276 n n C4 H42 PG4 sing 277 n n O3 C5 PG4 sing 278 n n C5 C6 PG4 sing 279 n n C5 H51 PG4 sing 280 n n C5 H52 PG4 sing 281 n n C6 O4 PG4 sing 282 n n C6 H61 PG4 sing 283 n n C6 H62 PG4 sing 284 n n O4 C7 PG4 sing 285 n n C7 C8 PG4 sing 286 n n C7 H71 PG4 sing 287 n n C7 H72 PG4 sing 288 n n C8 O5 PG4 sing 289 n n C8 H81 PG4 sing 290 n n C8 H82 PG4 sing 291 n n O5 HO5 PG4 sing 292 n n # _atom_sites.entry_id 8RZA _atom_sites.fract_transf_matrix[1][1] 0.00829 _atom_sites.fract_transf_matrix[1][2] 0.004787 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PO4 A 1 501 4 PO4 PO4 . E 5 PG4 A 1 502 501 PG4 PG4 . F 5 PG4 A 1 503 601 PG4 PG4 . G 4 PO4 A 1 504 501 PO4 PO4 . H 6 MG A 1 505 1 MG MG . I 6 MG A 1 506 2 MG MG . J 7 HOH A 1 601 44 HOH HOH . J 7 HOH A 2 602 84 HOH HOH . J 7 HOH A 3 603 97 HOH HOH . J 7 HOH A 4 604 152 HOH HOH . J 7 HOH A 5 605 102 HOH HOH . J 7 HOH A 6 606 108 HOH HOH . J 7 HOH A 7 607 154 HOH HOH . J 7 HOH A 8 608 33 HOH HOH . J 7 HOH A 9 609 168 HOH HOH . J 7 HOH A 10 610 138 HOH HOH . J 7 HOH A 11 611 82 HOH HOH . J 7 HOH A 12 612 72 HOH HOH . J 7 HOH A 13 613 126 HOH HOH . J 7 HOH A 14 614 60 HOH HOH . J 7 HOH A 15 615 68 HOH HOH . J 7 HOH A 16 616 92 HOH HOH . J 7 HOH A 17 617 59 HOH HOH . J 7 HOH A 18 618 52 HOH HOH . J 7 HOH A 19 619 156 HOH HOH . J 7 HOH A 20 620 13 HOH HOH . J 7 HOH A 21 621 157 HOH HOH . J 7 HOH A 22 622 101 HOH HOH . J 7 HOH A 23 623 127 HOH HOH . J 7 HOH A 24 624 109 HOH HOH . J 7 HOH A 25 625 86 HOH HOH . J 7 HOH A 26 626 117 HOH HOH . J 7 HOH A 27 627 93 HOH HOH . J 7 HOH A 28 628 23 HOH HOH . J 7 HOH A 29 629 27 HOH HOH . J 7 HOH A 30 630 85 HOH HOH . J 7 HOH A 31 631 64 HOH HOH . J 7 HOH A 32 632 107 HOH HOH . J 7 HOH A 33 633 19 HOH HOH . J 7 HOH A 34 634 74 HOH HOH . J 7 HOH A 35 635 155 HOH HOH . J 7 HOH A 36 636 61 HOH HOH . J 7 HOH A 37 637 20 HOH HOH . J 7 HOH A 38 638 112 HOH HOH . J 7 HOH A 39 639 48 HOH HOH . J 7 HOH A 40 640 89 HOH HOH . J 7 HOH A 41 641 18 HOH HOH . J 7 HOH A 42 642 49 HOH HOH . J 7 HOH A 43 643 16 HOH HOH . J 7 HOH A 44 644 35 HOH HOH . J 7 HOH A 45 645 14 HOH HOH . J 7 HOH A 46 646 120 HOH HOH . J 7 HOH A 47 647 22 HOH HOH . J 7 HOH A 48 648 96 HOH HOH . J 7 HOH A 49 649 114 HOH HOH . J 7 HOH A 50 650 56 HOH HOH . J 7 HOH A 51 651 6 HOH HOH . J 7 HOH A 52 652 29 HOH HOH . J 7 HOH A 53 653 51 HOH HOH . J 7 HOH A 54 654 24 HOH HOH . J 7 HOH A 55 655 58 HOH HOH . J 7 HOH A 56 656 94 HOH HOH . J 7 HOH A 57 657 37 HOH HOH . J 7 HOH A 58 658 78 HOH HOH . J 7 HOH A 59 659 65 HOH HOH . J 7 HOH A 60 660 128 HOH HOH . J 7 HOH A 61 661 17 HOH HOH . J 7 HOH A 62 662 75 HOH HOH . J 7 HOH A 63 663 57 HOH HOH . J 7 HOH A 64 664 28 HOH HOH . J 7 HOH A 65 665 183 HOH HOH . J 7 HOH A 66 666 42 HOH HOH . J 7 HOH A 67 667 165 HOH HOH . J 7 HOH A 68 668 40 HOH HOH . J 7 HOH A 69 669 144 HOH HOH . J 7 HOH A 70 670 119 HOH HOH . J 7 HOH A 71 671 185 HOH HOH . J 7 HOH A 72 672 3 HOH HOH . J 7 HOH A 73 673 113 HOH HOH . J 7 HOH A 74 674 95 HOH HOH . J 7 HOH A 75 675 171 HOH HOH . J 7 HOH A 76 676 53 HOH HOH . J 7 HOH A 77 677 87 HOH HOH . J 7 HOH A 78 678 31 HOH HOH . J 7 HOH A 79 679 34 HOH HOH . J 7 HOH A 80 680 142 HOH HOH . J 7 HOH A 81 681 7 HOH HOH . J 7 HOH A 82 682 190 HOH HOH . J 7 HOH A 83 683 80 HOH HOH . J 7 HOH A 84 684 99 HOH HOH . J 7 HOH A 85 685 46 HOH HOH . J 7 HOH A 86 686 148 HOH HOH . J 7 HOH A 87 687 124 HOH HOH . J 7 HOH A 88 688 32 HOH HOH . J 7 HOH A 89 689 91 HOH HOH . J 7 HOH A 90 690 41 HOH HOH . J 7 HOH A 91 691 149 HOH HOH . J 7 HOH A 92 692 115 HOH HOH . J 7 HOH A 93 693 62 HOH HOH . J 7 HOH A 94 694 111 HOH HOH . J 7 HOH A 95 695 121 HOH HOH . J 7 HOH A 96 696 54 HOH HOH . J 7 HOH A 97 697 131 HOH HOH . J 7 HOH A 98 698 50 HOH HOH . J 7 HOH A 99 699 30 HOH HOH . J 7 HOH A 100 700 26 HOH HOH . J 7 HOH A 101 701 110 HOH HOH . J 7 HOH A 102 702 73 HOH HOH . J 7 HOH A 103 703 76 HOH HOH . J 7 HOH A 104 704 118 HOH HOH . J 7 HOH A 105 705 38 HOH HOH . J 7 HOH A 106 706 21 HOH HOH . J 7 HOH A 107 707 45 HOH HOH . J 7 HOH A 108 708 158 HOH HOH . J 7 HOH A 109 709 130 HOH HOH . J 7 HOH A 110 710 147 HOH HOH . J 7 HOH A 111 711 181 HOH HOH . J 7 HOH A 112 712 1 HOH HOH . J 7 HOH A 113 713 98 HOH HOH . J 7 HOH A 114 714 163 HOH HOH . J 7 HOH A 115 715 125 HOH HOH . J 7 HOH A 116 716 79 HOH HOH . J 7 HOH A 117 717 66 HOH HOH . J 7 HOH A 118 718 55 HOH HOH . J 7 HOH A 119 719 25 HOH HOH . J 7 HOH A 120 720 83 HOH HOH . J 7 HOH A 121 721 43 HOH HOH . J 7 HOH A 122 722 129 HOH HOH . J 7 HOH A 123 723 151 HOH HOH . J 7 HOH A 124 724 135 HOH HOH . J 7 HOH A 125 725 141 HOH HOH . J 7 HOH A 126 726 11 HOH HOH . J 7 HOH A 127 727 143 HOH HOH . J 7 HOH A 128 728 77 HOH HOH . J 7 HOH A 129 729 133 HOH HOH . J 7 HOH A 130 730 15 HOH HOH . J 7 HOH A 131 731 90 HOH HOH . J 7 HOH A 132 732 105 HOH HOH . J 7 HOH A 133 733 103 HOH HOH . J 7 HOH A 134 734 167 HOH HOH . J 7 HOH A 135 735 161 HOH HOH . J 7 HOH A 136 736 39 HOH HOH . J 7 HOH A 137 737 182 HOH HOH . J 7 HOH A 138 738 187 HOH HOH . J 7 HOH A 139 739 140 HOH HOH . J 7 HOH A 140 740 178 HOH HOH . J 7 HOH A 141 741 67 HOH HOH . J 7 HOH A 142 742 179 HOH HOH . J 7 HOH A 143 743 47 HOH HOH . J 7 HOH A 144 744 191 HOH HOH . J 7 HOH A 145 745 139 HOH HOH . J 7 HOH A 146 746 193 HOH HOH . J 7 HOH A 147 747 176 HOH HOH . J 7 HOH A 148 748 12 HOH HOH . J 7 HOH A 149 749 150 HOH HOH . J 7 HOH A 150 750 175 HOH HOH . J 7 HOH A 151 751 136 HOH HOH . J 7 HOH A 152 752 159 HOH HOH . J 7 HOH A 153 753 104 HOH HOH . J 7 HOH A 154 754 184 HOH HOH . J 7 HOH A 155 755 100 HOH HOH . J 7 HOH A 156 756 145 HOH HOH . J 7 HOH A 157 757 186 HOH HOH . J 7 HOH A 158 758 134 HOH HOH . J 7 HOH A 159 759 189 HOH HOH . J 7 HOH A 160 760 188 HOH HOH . J 7 HOH A 161 761 164 HOH HOH . J 7 HOH A 162 762 88 HOH HOH . J 7 HOH A 163 763 81 HOH HOH . J 7 HOH A 164 764 192 HOH HOH . J 7 HOH A 165 765 166 HOH HOH . J 7 HOH A 166 766 70 HOH HOH . J 7 HOH A 167 767 172 HOH HOH . J 7 HOH A 168 768 132 HOH HOH . J 7 HOH A 169 769 116 HOH HOH . J 7 HOH A 170 770 180 HOH HOH . J 7 HOH A 171 771 63 HOH HOH . J 7 HOH A 172 772 137 HOH HOH . J 7 HOH A 173 773 146 HOH HOH . J 7 HOH A 174 774 123 HOH HOH . J 7 HOH A 175 775 170 HOH HOH . J 7 HOH A 176 776 69 HOH HOH . K 7 HOH R 1 101 4 HOH HOH . K 7 HOH R 2 102 174 HOH HOH . L 7 HOH B 1 101 2 HOH HOH . L 7 HOH B 2 102 9 HOH HOH . L 7 HOH B 3 103 10 HOH HOH . L 7 HOH B 4 104 5 HOH HOH . L 7 HOH B 5 105 153 HOH HOH . L 7 HOH B 6 106 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 PG4 . . . F 5 56.795 28.852 58.802 1 57.36 ? O2 PG4 503 A 1 HETATM 2 C C3 PG4 . . . F 5 56.395 27.785 57.98 1 52.49 ? C3 PG4 503 A 1 HETATM 3 C C4 PG4 . . . F 5 56.126 28.327 56.58 1 50.18 ? C4 PG4 503 A 1 HETATM 4 O O3 PG4 . . . F 5 55.548 27.37 55.74 1 49.66 ? O3 PG4 503 A 1 HETATM 5 C C5 PG4 . . . F 5 54.72 27.925 54.746 1 44.48 ? C5 PG4 503 A 1 HETATM 6 C C6 PG4 . . . F 5 55.617 28.669 53.767 1 46.04 ? C6 PG4 503 A 1 HETATM 7 O O4 PG4 . . . F 5 54.903 29.36 52.783 1 49.03 ? O4 PG4 503 A 1 HETATM 8 C C7 PG4 . . . F 5 55.671 29.519 51.617 1 55.79 ? C7 PG4 503 A 1 HETATM 9 C C8 PG4 . . . F 5 55.273 30.761 50.835 1 53.83 ? C8 PG4 503 A 1 HETATM 10 O O5 PG4 . . . F 5 55.956 30.793 49.611 1 56.65 ? O5 PG4 503 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #