data_8RZD # _model_server_result.job_id m41N76_bf3kixN91evhxtg _model_server_result.datetime_utc '2024-11-22 06:48:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8rzd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8RZD # _exptl.entry_id 8RZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8RZD _cell.length_a 168.204 _cell.length_b 168.204 _cell.length_c 52.057 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8RZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 77 B CYS 74 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 B SG CYS 80 B CYS 77 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc3 B NE2 HIS 86 B HIS 83 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 B SG CYS 93 B CYS 90 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc5 B SG CYS 120 B CYS 117 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc6 B SG CYS 123 B CYS 120 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc7 B SG CYS 131 B CYS 128 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc8 B SG CYS 133 B CYS 130 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 281 n n O1 C6 MES sing 282 n n C2 C3 MES sing 283 n n C2 H21 MES sing 284 n n C2 H22 MES sing 285 n n C3 N4 MES sing 286 n n C3 H31 MES sing 287 n n C3 H32 MES sing 288 n n N4 C5 MES sing 289 n n N4 C7 MES sing 290 n n N4 HN4 MES sing 291 n n C5 C6 MES sing 292 n n C5 H51 MES sing 293 n n C5 H52 MES sing 294 n n C6 H61 MES sing 295 n n C6 H62 MES sing 296 n n C7 C8 MES sing 297 n n C7 H71 MES sing 298 n n C7 H72 MES sing 299 n n C8 S MES sing 300 n n C8 H81 MES sing 301 n n C8 H82 MES sing 302 n n S O1S MES doub 303 n n S O2S MES doub 304 n n S O3S MES sing 305 n n # _atom_sites.entry_id 8RZD _atom_sites.fract_transf_matrix[1][1] 0.005945 _atom_sites.fract_transf_matrix[1][2] 0.003432 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1H4C A 1 301 301 A1H4C OBV . D 4 MES A 1 302 302 MES MES . E 5 ZN B 1 201 141 ZN ZN . F 5 ZN B 1 202 142 ZN ZN . G 6 HOH A 1 401 456 HOH HOH . G 6 HOH A 2 402 537 HOH HOH . G 6 HOH A 3 403 345 HOH HOH . G 6 HOH A 4 404 516 HOH HOH . G 6 HOH A 5 405 414 HOH HOH . G 6 HOH A 6 406 444 HOH HOH . G 6 HOH A 7 407 379 HOH HOH . G 6 HOH A 8 408 505 HOH HOH . G 6 HOH A 9 409 430 HOH HOH . G 6 HOH A 10 410 484 HOH HOH . G 6 HOH A 11 411 436 HOH HOH . G 6 HOH A 12 412 492 HOH HOH . G 6 HOH A 13 413 432 HOH HOH . G 6 HOH A 14 414 496 HOH HOH . G 6 HOH A 15 415 327 HOH HOH . G 6 HOH A 16 416 451 HOH HOH . G 6 HOH A 17 417 427 HOH HOH . G 6 HOH A 18 418 421 HOH HOH . G 6 HOH A 19 419 474 HOH HOH . G 6 HOH A 20 420 488 HOH HOH . G 6 HOH A 21 421 359 HOH HOH . G 6 HOH A 22 422 431 HOH HOH . G 6 HOH A 23 423 479 HOH HOH . G 6 HOH A 24 424 455 HOH HOH . G 6 HOH A 25 425 440 HOH HOH . G 6 HOH A 26 426 467 HOH HOH . G 6 HOH A 27 427 441 HOH HOH . G 6 HOH A 28 428 326 HOH HOH . G 6 HOH A 29 429 435 HOH HOH . G 6 HOH A 30 430 358 HOH HOH . G 6 HOH A 31 431 367 HOH HOH . G 6 HOH A 32 432 529 HOH HOH . G 6 HOH A 33 433 382 HOH HOH . G 6 HOH A 34 434 514 HOH HOH . G 6 HOH A 35 435 336 HOH HOH . G 6 HOH A 36 436 349 HOH HOH . G 6 HOH A 37 437 439 HOH HOH . G 6 HOH A 38 438 490 HOH HOH . G 6 HOH A 39 439 418 HOH HOH . G 6 HOH A 40 440 476 HOH HOH . G 6 HOH A 41 441 394 HOH HOH . G 6 HOH A 42 442 321 HOH HOH . G 6 HOH A 43 443 449 HOH HOH . G 6 HOH A 44 444 503 HOH HOH . G 6 HOH A 45 445 502 HOH HOH . G 6 HOH A 46 446 334 HOH HOH . G 6 HOH A 47 447 425 HOH HOH . G 6 HOH A 48 448 422 HOH HOH . G 6 HOH A 49 449 372 HOH HOH . G 6 HOH A 50 450 408 HOH HOH . G 6 HOH A 51 451 469 HOH HOH . G 6 HOH A 52 452 355 HOH HOH . G 6 HOH A 53 453 491 HOH HOH . G 6 HOH A 54 454 417 HOH HOH . G 6 HOH A 55 455 332 HOH HOH . G 6 HOH A 56 456 350 HOH HOH . G 6 HOH A 57 457 498 HOH HOH . G 6 HOH A 58 458 464 HOH HOH . G 6 HOH A 59 459 377 HOH HOH . G 6 HOH A 60 460 330 HOH HOH . G 6 HOH A 61 461 329 HOH HOH . G 6 HOH A 62 462 424 HOH HOH . G 6 HOH A 63 463 378 HOH HOH . G 6 HOH A 64 464 348 HOH HOH . G 6 HOH A 65 465 423 HOH HOH . G 6 HOH A 66 466 381 HOH HOH . G 6 HOH A 67 467 409 HOH HOH . G 6 HOH A 68 468 486 HOH HOH . G 6 HOH A 69 469 465 HOH HOH . G 6 HOH A 70 470 504 HOH HOH . G 6 HOH A 71 471 485 HOH HOH . G 6 HOH A 72 472 406 HOH HOH . G 6 HOH A 73 473 399 HOH HOH . G 6 HOH A 74 474 351 HOH HOH . G 6 HOH A 75 475 499 HOH HOH . G 6 HOH A 76 476 471 HOH HOH . G 6 HOH A 77 477 454 HOH HOH . G 6 HOH A 78 478 322 HOH HOH . G 6 HOH A 79 479 497 HOH HOH . G 6 HOH A 80 480 438 HOH HOH . G 6 HOH A 81 481 392 HOH HOH . G 6 HOH A 82 482 428 HOH HOH . G 6 HOH A 83 483 493 HOH HOH . G 6 HOH A 84 484 480 HOH HOH . G 6 HOH A 85 485 333 HOH HOH . G 6 HOH A 86 486 331 HOH HOH . G 6 HOH A 87 487 433 HOH HOH . G 6 HOH A 88 488 452 HOH HOH . G 6 HOH A 89 489 489 HOH HOH . G 6 HOH A 90 490 384 HOH HOH . G 6 HOH A 91 491 450 HOH HOH . G 6 HOH A 92 492 391 HOH HOH . G 6 HOH A 93 493 463 HOH HOH . G 6 HOH A 94 494 356 HOH HOH . G 6 HOH A 95 495 411 HOH HOH . G 6 HOH A 96 496 483 HOH HOH . G 6 HOH A 97 497 386 HOH HOH . G 6 HOH A 98 498 340 HOH HOH . G 6 HOH A 99 499 458 HOH HOH . G 6 HOH A 100 500 338 HOH HOH . G 6 HOH A 101 501 466 HOH HOH . G 6 HOH A 102 502 494 HOH HOH . G 6 HOH A 103 503 528 HOH HOH . G 6 HOH A 104 504 426 HOH HOH . G 6 HOH A 105 505 413 HOH HOH . G 6 HOH A 106 506 360 HOH HOH . G 6 HOH A 107 507 368 HOH HOH . G 6 HOH A 108 508 412 HOH HOH . G 6 HOH A 109 509 437 HOH HOH . G 6 HOH A 110 510 389 HOH HOH . G 6 HOH A 111 511 416 HOH HOH . G 6 HOH A 112 512 457 HOH HOH . G 6 HOH A 113 513 361 HOH HOH . G 6 HOH A 114 514 346 HOH HOH . G 6 HOH A 115 515 357 HOH HOH . G 6 HOH A 116 516 370 HOH HOH . G 6 HOH A 117 517 501 HOH HOH . G 6 HOH A 118 518 508 HOH HOH . G 6 HOH A 119 519 470 HOH HOH . G 6 HOH A 120 520 365 HOH HOH . G 6 HOH A 121 521 473 HOH HOH . G 6 HOH A 122 522 420 HOH HOH . G 6 HOH A 123 523 385 HOH HOH . G 6 HOH A 124 524 526 HOH HOH . G 6 HOH A 125 525 532 HOH HOH . G 6 HOH A 126 526 477 HOH HOH . G 6 HOH A 127 527 520 HOH HOH . G 6 HOH A 128 528 366 HOH HOH . G 6 HOH A 129 529 339 HOH HOH . G 6 HOH A 130 530 347 HOH HOH . G 6 HOH A 131 531 461 HOH HOH . G 6 HOH A 132 532 398 HOH HOH . G 6 HOH A 133 533 523 HOH HOH . G 6 HOH A 134 534 533 HOH HOH . G 6 HOH A 135 535 429 HOH HOH . G 6 HOH A 136 536 507 HOH HOH . G 6 HOH A 137 537 324 HOH HOH . G 6 HOH A 138 538 517 HOH HOH . G 6 HOH A 139 539 500 HOH HOH . G 6 HOH A 140 540 442 HOH HOH . G 6 HOH A 141 541 445 HOH HOH . G 6 HOH A 142 542 531 HOH HOH . G 6 HOH A 143 543 509 HOH HOH . G 6 HOH A 144 544 521 HOH HOH . G 6 HOH A 145 545 400 HOH HOH . G 6 HOH A 146 546 335 HOH HOH . G 6 HOH A 147 547 519 HOH HOH . G 6 HOH A 148 548 534 HOH HOH . G 6 HOH A 149 549 510 HOH HOH . G 6 HOH A 150 550 375 HOH HOH . G 6 HOH A 151 551 462 HOH HOH . G 6 HOH A 152 552 383 HOH HOH . G 6 HOH A 153 553 511 HOH HOH . G 6 HOH A 154 554 515 HOH HOH . G 6 HOH A 155 555 525 HOH HOH . G 6 HOH A 156 556 524 HOH HOH . G 6 HOH A 157 557 402 HOH HOH . G 6 HOH A 158 558 506 HOH HOH . G 6 HOH A 159 559 527 HOH HOH . G 6 HOH A 160 560 446 HOH HOH . G 6 HOH A 161 561 405 HOH HOH . G 6 HOH A 162 562 513 HOH HOH . G 6 HOH A 163 563 536 HOH HOH . G 6 HOH A 164 564 472 HOH HOH . G 6 HOH A 165 565 478 HOH HOH . G 6 HOH A 166 566 396 HOH HOH . G 6 HOH A 167 567 512 HOH HOH . G 6 HOH A 168 568 390 HOH HOH . G 6 HOH A 169 569 481 HOH HOH . G 6 HOH A 170 570 530 HOH HOH . H 6 HOH B 1 301 434 HOH HOH . H 6 HOH B 2 302 410 HOH HOH . H 6 HOH B 3 303 380 HOH HOH . H 6 HOH B 4 304 482 HOH HOH . H 6 HOH B 5 305 459 HOH HOH . H 6 HOH B 6 306 395 HOH HOH . H 6 HOH B 7 307 369 HOH HOH . H 6 HOH B 8 308 371 HOH HOH . H 6 HOH B 9 309 468 HOH HOH . H 6 HOH B 10 310 328 HOH HOH . H 6 HOH B 11 311 363 HOH HOH . H 6 HOH B 12 312 374 HOH HOH . H 6 HOH B 13 313 337 HOH HOH . H 6 HOH B 14 314 453 HOH HOH . H 6 HOH B 15 315 518 HOH HOH . H 6 HOH B 16 316 354 HOH HOH . H 6 HOH B 17 317 447 HOH HOH . H 6 HOH B 18 318 325 HOH HOH . H 6 HOH B 19 319 487 HOH HOH . H 6 HOH B 20 320 415 HOH HOH . H 6 HOH B 21 321 323 HOH HOH . H 6 HOH B 22 322 401 HOH HOH . H 6 HOH B 23 323 407 HOH HOH . H 6 HOH B 24 324 419 HOH HOH . H 6 HOH B 25 325 448 HOH HOH . H 6 HOH B 26 326 341 HOH HOH . H 6 HOH B 27 327 475 HOH HOH . H 6 HOH B 28 328 387 HOH HOH . H 6 HOH B 29 329 404 HOH HOH . H 6 HOH B 30 330 522 HOH HOH . H 6 HOH B 31 331 376 HOH HOH . H 6 HOH B 32 332 362 HOH HOH . H 6 HOH B 33 333 388 HOH HOH . H 6 HOH B 34 334 364 HOH HOH . H 6 HOH B 35 335 342 HOH HOH . H 6 HOH B 36 336 352 HOH HOH . H 6 HOH B 37 337 460 HOH HOH . H 6 HOH B 38 338 343 HOH HOH . H 6 HOH B 39 339 397 HOH HOH . H 6 HOH B 40 340 344 HOH HOH . H 6 HOH B 41 341 373 HOH HOH . H 6 HOH B 42 342 393 HOH HOH . H 6 HOH B 43 343 353 HOH HOH . H 6 HOH B 44 344 443 HOH HOH . H 6 HOH B 45 345 403 HOH HOH . H 6 HOH B 46 346 495 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . D 4 69.654 -35.003 16.486 1 44.2 ? O1 MES 302 A 1 HETATM 2 C C2 MES . . . D 4 70.567 -36.098 16.483 1 43.9 ? C2 MES 302 A 1 HETATM 3 C C3 MES . . . D 4 70.123 -37.329 17.261 1 41.62 ? C3 MES 302 A 1 HETATM 4 N N4 MES . . . D 4 69.33 -37.01 18.448 1 46.92 ? N4 MES 302 A 1 HETATM 5 C C5 MES . . . D 4 68.327 -35.962 18.333 1 47.1 ? C5 MES 302 A 1 HETATM 6 C C6 MES . . . D 4 69.008 -34.743 17.736 1 44.38 ? C6 MES 302 A 1 HETATM 7 C C7 MES . . . D 4 68.947 -38.209 19.206 1 52.23 ? C7 MES 302 A 1 HETATM 8 C C8 MES . . . D 4 67.917 -37.818 20.267 1 52.72 ? C8 MES 302 A 1 HETATM 9 S S MES . . . D 4 67.636 -39.077 21.352 1 63.43 ? S MES 302 A 1 HETATM 10 O O1S MES . . . D 4 67.618 -40.372 20.638 1 57.12 ? O1S MES 302 A 1 HETATM 11 O O2S MES . . . D 4 66.342 -38.855 22.038 1 48.36 ? O2S MES 302 A 1 HETATM 12 O O3S MES . . . D 4 68.73 -39.06 22.366 1 58.19 ? O3S MES 302 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #