data_8S1B # _model_server_result.job_id wOm18VYayvbG9XdGSWw_WQ _model_server_result.datetime_utc '2025-09-10 03:41:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1003}' # _entry.id 8S1B # _exptl.entry_id 8S1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 508.617 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[[4-(1-methylpyrazol-4-yl)phenyl]methyl]-6-[7-(3-pyrrolidin-1-ylpropoxy)imidazo[1,2-a]pyridin-3-yl]pyrimidin-4-amine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8S1B _cell.length_a 58.74 _cell.length_b 59.29 _cell.length_c 192.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8S1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I 1 1 B,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C29 H32 N8 O' _chem_comp.formula_weight 508.617 _chem_comp.id K3R _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[[4-(1-methylpyrazol-4-yl)phenyl]methyl]-6-[7-(3-pyrrolidin-1-ylpropoxy)imidazo[1,2-a]pyridin-3-yl]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[4-(1-Methyl-1H-pyrazol-4-yl)-benzyl]-{6-[7-(3-pyrrolidin-1-yl-propoxy)-imidazo[1,2-a]pyridin-3-yl]-pyrimidin-4-yl}-amine' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 N2 K3R sing 173 n y N6 C5 K3R doub 174 n y C1 N2 K3R sing 175 n n N2 C3 K3R sing 176 n y C5 C4 K3R sing 177 n y C3 C4 K3R doub 178 n y C4 C7 K3R sing 179 n n C7 C38 K3R doub 180 n y C7 C8 K3R sing 181 n y C38 C37 K3R sing 182 n y C8 C9 K3R doub 183 n y C37 C10 K3R doub 184 n y C9 C10 K3R sing 185 n y C10 C11 K3R sing 186 n n C31 C30 K3R sing 187 n n C31 C32 K3R sing 188 n n C27 C26 K3R sing 189 n n C27 C28 K3R sing 190 n n C30 N29 K3R sing 191 n n N29 C33 K3R sing 192 n n N29 C28 K3R sing 193 n n N21 C20 K3R sing 194 n y N21 C22 K3R doub 195 n y C20 C19 K3R doub 196 n y C22 C23 K3R sing 197 n y C22 N36 K3R sing 198 n y C23 C24 K3R doub 199 n y C19 N36 K3R sing 200 n y C19 C15 K3R sing 201 n n N36 C35 K3R sing 202 n y C26 O25 K3R sing 203 n n C24 O25 K3R sing 204 n n C24 C34 K3R sing 205 n y C33 C32 K3R sing 206 n n N16 C15 K3R doub 207 n y N16 C17 K3R sing 208 n y C15 C14 K3R sing 209 n y C35 C34 K3R doub 210 n y C17 N18 K3R doub 211 n y C14 C13 K3R doub 212 n y N18 C13 K3R sing 213 n y C13 N12 K3R sing 214 n n N12 C11 K3R sing 215 n n C1 H1 K3R sing 216 n n C1 H2 K3R sing 217 n n C1 H3 K3R sing 218 n n C3 H4 K3R sing 219 n n C5 H5 K3R sing 220 n n C8 H6 K3R sing 221 n n C11 H7 K3R sing 222 n n C11 H8 K3R sing 223 n n C17 H9 K3R sing 224 n n C23 H10 K3R sing 225 n n C27 H11 K3R sing 226 n n C27 H12 K3R sing 227 n n C30 H13 K3R sing 228 n n C30 H14 K3R sing 229 n n C31 H15 K3R sing 230 n n C31 H16 K3R sing 231 n n C32 H17 K3R sing 232 n n C32 H18 K3R sing 233 n n C33 H19 K3R sing 234 n n C33 H20 K3R sing 235 n n C34 H21 K3R sing 236 n n C35 H22 K3R sing 237 n n C37 H23 K3R sing 238 n n C38 H24 K3R sing 239 n n C9 H25 K3R sing 240 n n N12 H26 K3R sing 241 n n C14 H27 K3R sing 242 n n C20 H28 K3R sing 243 n n C26 H29 K3R sing 244 n n C26 H30 K3R sing 245 n n C28 H31 K3R sing 246 n n C28 H32 K3R sing 247 n n # _atom_sites.entry_id 8S1B _atom_sites.fract_transf_matrix[1][1] 0.017024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K3R A 1 1001 1001 K3R LIG . D 3 CL A 1 1002 1 CL CL . E 2 K3R B 1 1001 1001 K3R LIG . F 2 K3R B 1 1002 1101 K3R LIG . G 2 K3R B 1 1003 1201 K3R LIG . H 3 CL B 1 1004 2 CL CL . I 4 HOH A 1 1101 9 HOH HOH . I 4 HOH A 2 1102 71 HOH HOH . I 4 HOH A 3 1103 26 HOH HOH . I 4 HOH A 4 1104 8 HOH HOH . I 4 HOH A 5 1105 3 HOH HOH . I 4 HOH A 6 1106 68 HOH HOH . I 4 HOH A 7 1107 6 HOH HOH . I 4 HOH A 8 1108 19 HOH HOH . I 4 HOH A 9 1109 25 HOH HOH . I 4 HOH A 10 1110 70 HOH HOH . I 4 HOH A 11 1111 113 HOH HOH . I 4 HOH A 12 1112 11 HOH HOH . I 4 HOH A 13 1113 12 HOH HOH . I 4 HOH A 14 1114 20 HOH HOH . I 4 HOH A 15 1115 62 HOH HOH . I 4 HOH A 16 1116 16 HOH HOH . I 4 HOH A 17 1117 4 HOH HOH . I 4 HOH A 18 1118 98 HOH HOH . I 4 HOH A 19 1119 116 HOH HOH . I 4 HOH A 20 1120 90 HOH HOH . I 4 HOH A 21 1121 24 HOH HOH . I 4 HOH A 22 1122 21 HOH HOH . I 4 HOH A 23 1123 2 HOH HOH . I 4 HOH A 24 1124 13 HOH HOH . I 4 HOH A 25 1125 27 HOH HOH . I 4 HOH A 26 1126 23 HOH HOH . I 4 HOH A 27 1127 14 HOH HOH . I 4 HOH A 28 1128 99 HOH HOH . I 4 HOH A 29 1129 101 HOH HOH . I 4 HOH A 30 1130 18 HOH HOH . I 4 HOH A 31 1131 17 HOH HOH . I 4 HOH A 32 1132 100 HOH HOH . I 4 HOH A 33 1133 73 HOH HOH . I 4 HOH A 34 1134 75 HOH HOH . I 4 HOH A 35 1135 67 HOH HOH . I 4 HOH A 36 1136 65 HOH HOH . I 4 HOH A 37 1137 72 HOH HOH . I 4 HOH A 38 1138 63 HOH HOH . I 4 HOH A 39 1139 22 HOH HOH . I 4 HOH A 40 1140 102 HOH HOH . I 4 HOH A 41 1141 97 HOH HOH . I 4 HOH A 42 1142 112 HOH HOH . I 4 HOH A 43 1143 91 HOH HOH . I 4 HOH A 44 1144 115 HOH HOH . I 4 HOH A 45 1145 95 HOH HOH . I 4 HOH A 46 1146 60 HOH HOH . I 4 HOH A 47 1147 121 HOH HOH . I 4 HOH A 48 1148 7 HOH HOH . I 4 HOH A 49 1149 58 HOH HOH . I 4 HOH A 50 1150 61 HOH HOH . J 4 HOH B 1 1101 57 HOH HOH . J 4 HOH B 2 1102 54 HOH HOH . J 4 HOH B 3 1103 48 HOH HOH . J 4 HOH B 4 1104 46 HOH HOH . J 4 HOH B 5 1105 94 HOH HOH . J 4 HOH B 6 1106 114 HOH HOH . J 4 HOH B 7 1107 49 HOH HOH . J 4 HOH B 8 1108 84 HOH HOH . J 4 HOH B 9 1109 87 HOH HOH . J 4 HOH B 10 1110 43 HOH HOH . J 4 HOH B 11 1111 105 HOH HOH . J 4 HOH B 12 1112 85 HOH HOH . J 4 HOH B 13 1113 31 HOH HOH . J 4 HOH B 14 1114 33 HOH HOH . J 4 HOH B 15 1115 37 HOH HOH . J 4 HOH B 16 1116 42 HOH HOH . J 4 HOH B 17 1117 30 HOH HOH . J 4 HOH B 18 1118 55 HOH HOH . J 4 HOH B 19 1119 78 HOH HOH . J 4 HOH B 20 1120 52 HOH HOH . J 4 HOH B 21 1121 38 HOH HOH . J 4 HOH B 22 1122 109 HOH HOH . J 4 HOH B 23 1123 79 HOH HOH . J 4 HOH B 24 1124 110 HOH HOH . J 4 HOH B 25 1125 29 HOH HOH . J 4 HOH B 26 1126 80 HOH HOH . J 4 HOH B 27 1127 35 HOH HOH . J 4 HOH B 28 1128 93 HOH HOH . J 4 HOH B 29 1129 50 HOH HOH . J 4 HOH B 30 1130 45 HOH HOH . J 4 HOH B 31 1131 103 HOH HOH . J 4 HOH B 32 1132 119 HOH HOH . J 4 HOH B 33 1133 82 HOH HOH . J 4 HOH B 34 1134 53 HOH HOH . J 4 HOH B 35 1135 117 HOH HOH . J 4 HOH B 36 1136 92 HOH HOH . J 4 HOH B 37 1137 32 HOH HOH . J 4 HOH B 38 1138 108 HOH HOH . J 4 HOH B 39 1139 44 HOH HOH . J 4 HOH B 40 1140 77 HOH HOH . J 4 HOH B 41 1141 40 HOH HOH . J 4 HOH B 42 1142 39 HOH HOH . J 4 HOH B 43 1143 36 HOH HOH . J 4 HOH B 44 1144 74 HOH HOH . J 4 HOH B 45 1145 83 HOH HOH . J 4 HOH B 46 1146 41 HOH HOH . J 4 HOH B 47 1147 81 HOH HOH . J 4 HOH B 48 1148 34 HOH HOH . J 4 HOH B 49 1149 118 HOH HOH . J 4 HOH B 50 1150 51 HOH HOH . J 4 HOH B 51 1151 76 HOH HOH . J 4 HOH B 52 1152 5 HOH HOH . J 4 HOH B 53 1153 120 HOH HOH . J 4 HOH B 54 1154 107 HOH HOH . J 4 HOH B 55 1155 104 HOH HOH . J 4 HOH B 56 1156 88 HOH HOH . J 4 HOH B 57 1157 89 HOH HOH . J 4 HOH B 58 1158 111 HOH HOH . J 4 HOH B 59 1159 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K3R . . . G 2 -22.074 -10.028 8.832 1 78.44 ? C1 K3R 1003 B 1 HETATM 2 C C3 K3R . . . G 2 -21.054 -11.127 6.732 1 78.15 ? C3 K3R 1003 B 1 HETATM 3 C C4 K3R . . . G 2 -20.64 -10.72 5.444 1 82.64 ? C4 K3R 1003 B 1 HETATM 4 C C5 K3R . . . G 2 -20.908 -9.297 5.459 1 80.11 ? C5 K3R 1003 B 1 HETATM 5 C C7 K3R . . . G 2 -20.044 -11.554 4.33 1 75.18 ? C7 K3R 1003 B 1 HETATM 6 C C8 K3R . . . G 2 -20.178 -11.192 2.967 1 75.73 ? C8 K3R 1003 B 1 HETATM 7 C C11 K3R . . . G 2 -18.281 -13.999 0.983 1 65.8 ? C11 K3R 1003 B 1 HETATM 8 C C15 K3R . . . G 2 -22.02 -15.543 -0.973 1 73.49 ? C15 K3R 1003 B 1 HETATM 9 C C17 K3R . . . G 2 -21.349 -17.669 -0.262 1 59.61 ? C17 K3R 1003 B 1 HETATM 10 C C19 K3R . . . G 2 -23.013 -14.63 -1.674 1 83.1 ? C19 K3R 1003 B 1 HETATM 11 C C23 K3R . . . G 2 -26.259 -13.675 -3.153 1 105.84 ? C23 K3R 1003 B 1 HETATM 12 C C24 K3R . . . G 2 -27.105 -14.755 -3.017 1 105.07 ? C24 K3R 1003 B 1 HETATM 13 O O25 K3R . . . G 2 -28.445 -14.766 -3.457 1 111.83 ? O25 K3R 1003 B 1 HETATM 14 C C27 K3R . . . G 2 -29.177 -12.367 -3.907 1 128.1 ? C27 K3R 1003 B 1 HETATM 15 C C30 K3R . . . G 2 -31.28 -10.25 -2.163 1 128.93 ? C30 K3R 1003 B 1 HETATM 16 C C31 K3R . . . G 2 -32.754 -10.082 -1.761 1 129.88 ? C31 K3R 1003 B 1 HETATM 17 C C32 K3R . . . G 2 -33.518 -11.162 -2.438 1 130.39 ? C32 K3R 1003 B 1 HETATM 18 C C33 K3R . . . G 2 -32.538 -11.89 -3.418 1 130.94 ? C33 K3R 1003 B 1 HETATM 19 C C34 K3R . . . G 2 -26.59 -15.939 -2.372 1 96.12 ? C34 K3R 1003 B 1 HETATM 20 C C35 K3R . . . G 2 -25.27 -15.976 -1.909 1 88.32 ? C35 K3R 1003 B 1 HETATM 21 C C37 K3R . . . G 2 -18.762 -13.514 3.513 1 69.69 ? C37 K3R 1003 B 1 HETATM 22 C C38 K3R . . . G 2 -19.317 -12.743 4.561 1 72.37 ? C38 K3R 1003 B 1 HETATM 23 N N2 K3R . . . G 2 -21.538 -10.013 7.437 1 77.45 ? N2 K3R 1003 B 1 HETATM 24 N N6 K3R . . . G 2 -21.447 -8.882 6.65 1 83.62 ? N6 K3R 1003 B 1 HETATM 25 C C9 K3R . . . G 2 -19.622 -11.967 1.916 1 74.64 ? C9 K3R 1003 B 1 HETATM 26 C C10 K3R . . . G 2 -18.893 -13.153 2.15 1 66.46 ? C10 K3R 1003 B 1 HETATM 27 N N12 K3R . . . G 2 -18.699 -15.432 0.902 1 60.25 ? N12 K3R 1003 B 1 HETATM 28 C C13 K3R . . . G 2 -19.902 -15.917 0.29 1 60.43 ? C13 K3R 1003 B 1 HETATM 29 C C14 K3R . . . G 2 -20.836 -15.051 -0.37 1 66.46 ? C14 K3R 1003 B 1 HETATM 30 N N16 K3R . . . G 2 -22.273 -16.89 -0.907 1 64.51 ? N16 K3R 1003 B 1 HETATM 31 N N18 K3R . . . G 2 -20.185 -17.257 0.335 1 55.6 ? N18 K3R 1003 B 1 HETATM 32 C C20 K3R . . . G 2 -22.78 -13.317 -2.113 1 83.35 ? C20 K3R 1003 B 1 HETATM 33 N N21 K3R . . . G 2 -23.908 -12.759 -2.715 1 87.81 ? N21 K3R 1003 B 1 HETATM 34 C C22 K3R . . . G 2 -24.902 -13.714 -2.676 1 96.24 ? C22 K3R 1003 B 1 HETATM 35 C C26 K3R . . . G 2 -28.88 -13.819 -4.462 1 117.76 ? C26 K3R 1003 B 1 HETATM 36 C C28 K3R . . . G 2 -30.409 -12.335 -2.952 1 132.56 ? C28 K3R 1003 B 1 HETATM 37 N N29 K3R . . . G 2 -31.265 -11.228 -3.309 1 133.03 ? N29 K3R 1003 B 1 HETATM 38 N N36 K3R . . . G 2 -24.389 -14.878 -2.043 1 91.83 ? N36 K3R 1003 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #