data_8S2D # _model_server_result.job_id oOuQ_Mjn3QcbYR1e7L92PQ _model_server_result.datetime_utc '2025-09-06 13:05:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 8S2D # _exptl.entry_id 8S2D _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 188.264 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3~{R})-3-oxidanyldecanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 1 A LEU 1 1_555 A N DGL 2 A DGL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale2 A N LEU 1 A LEU 1 1_555 B C IG8 . A IG8 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale3 A C DGL 2 A DGL 2 1_555 A N DGN 3 A DGN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? covale ? covale4 A C DGN 3 A DGN 3 1_555 A N DVA 4 A DVA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale5 A C DVA 4 A DVA 4 1_555 A N DLE 5 A DLE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale6 A C DLE 5 A DLE 5 1_555 A N DGN 6 A DGN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale7 A C DGN 6 A DGN 6 1_555 A N DVA 7 A DVA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale8 A C DVA 7 A DVA 7 1_555 A N DLE 8 A DLE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale9 A C DLE 8 A DLE 8 1_555 A N DGN 9 A DGN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale10 A C DGN 9 A DGN 9 1_555 A N DSN 10 A DSN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale11 A C DSN 10 A DSN 10 1_555 A N VAL 11 A VAL 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale12 A OG DSN 10 A DSN 10 1_555 A C ILE 14 A ILE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C10 H20 O3' _chem_comp.formula_weight 188.264 _chem_comp.id IG8 _chem_comp.mon_nstd_flag . _chem_comp.name '(3~{R})-3-oxidanyldecanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OG1 CB IG8 sing 90 n n C CA IG8 sing 91 n n C O IG8 doub 92 n n CA CB IG8 sing 93 n n CB CG2 IG8 sing 94 n n CG2 CD IG8 sing 95 n n CD CE IG8 sing 96 n n CE CZ IG8 sing 97 n n CZ CH IG8 sing 98 n n CH CT IG8 sing 99 n n CT CI IG8 sing 100 n n C O1 IG8 sing 101 n n CA HA1 IG8 sing 102 n n CA HA2 IG8 sing 103 n n CB HB IG8 sing 104 n n CG2 HG21 IG8 sing 105 n n CG2 HG22 IG8 sing 106 n n OG1 HG1 IG8 sing 107 n n CD HD1 IG8 sing 108 n n CD HD2 IG8 sing 109 n n CE HE1 IG8 sing 110 n n CE HE2 IG8 sing 111 n n CZ HZ1 IG8 sing 112 n n CZ HZ2 IG8 sing 113 n n CH HH1 IG8 sing 114 n n CH HH2 IG8 sing 115 n n CI HI2 IG8 sing 116 n n CI HI3 IG8 sing 117 n n CI HI1 IG8 sing 118 n n CT HT1 IG8 sing 119 n n CT HT2 IG8 sing 120 n n O1 H1 IG8 sing 121 n n # _atom_sites.entry_id 8S2D _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id IG8 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id IG8 _pdbx_nonpoly_scheme.auth_mon_id IG8 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA IG8 . . . B 2 7.684 5.23 -4.187 1 0 ? CA IG8 101 A 1 HETATM 2 C C IG8 . . . B 2 6.585 4.178 -4.487 1 0 ? C IG8 101 A 1 HETATM 3 O O IG8 . . . B 2 5.879 3.641 -3.648 1 0 ? O IG8 101 A 1 HETATM 4 C CB IG8 . . . B 2 8.39 4.951 -2.833 1 0 ? CB IG8 101 A 1 HETATM 5 C CG2 IG8 . . . B 2 9.165 3.644 -2.914 1 0 ? CG2 IG8 101 A 1 HETATM 6 O OG1 IG8 . . . B 2 9.348 6.009 -2.845 1 0 ? OG1 IG8 101 A 1 HETATM 7 C CD IG8 . . . B 2 9.815 3.173 -1.57 1 0 ? CD IG8 101 A 1 HETATM 8 C CE IG8 . . . B 2 10.236 1.657 -1.438 1 0 ? CE IG8 101 A 1 HETATM 9 C CZ IG8 . . . B 2 11.321 1.055 -2.312 1 0 ? CZ IG8 101 A 1 HETATM 10 C CH IG8 . . . B 2 12.792 1.446 -2.021 1 0 ? CH IG8 101 A 1 HETATM 11 C CI IG8 . . . B 2 13.848 0.421 -4.191 1 0 ? CI IG8 101 A 1 HETATM 12 C CT IG8 . . . B 2 13.947 0.599 -2.652 1 0 ? CT IG8 101 A 1 HETATM 13 H HA1 IG8 . . . B 2 7.236 6.221 -4.095 1 0 ? HA1 IG8 101 A 1 HETATM 14 H HA2 IG8 . . . B 2 8.544 5.209 -4.862 1 0 ? HA2 IG8 101 A 1 HETATM 15 H HB IG8 . . . B 2 7.715 5.075 -1.976 1 0 ? HB IG8 101 A 1 HETATM 16 H HG21 IG8 . . . B 2 9.951 3.765 -3.661 1 0 ? HG21 IG8 101 A 1 HETATM 17 H HG22 IG8 . . . B 2 8.469 2.819 -3.087 1 0 ? HG22 IG8 101 A 1 HETATM 18 H HG1 IG8 . . . B 2 9.875 5.838 -3.646 1 0 ? HG1 IG8 101 A 1 HETATM 19 H HD1 IG8 . . . B 2 9.127 3.462 -0.772 1 0 ? HD1 IG8 101 A 1 HETATM 20 H HD2 IG8 . . . B 2 10.722 3.767 -1.445 1 0 ? HD2 IG8 101 A 1 HETATM 21 H HE1 IG8 . . . B 2 9.353 1.079 -1.719 1 0 ? HE1 IG8 101 A 1 HETATM 22 H HE2 IG8 . . . B 2 10.408 1.565 -0.364 1 0 ? HE2 IG8 101 A 1 HETATM 23 H HZ1 IG8 . . . B 2 11.134 1.381 -3.337 1 0 ? HZ1 IG8 101 A 1 HETATM 24 H HZ2 IG8 . . . B 2 11.168 -0.026 -2.347 1 0 ? HZ2 IG8 101 A 1 HETATM 25 H HH1 IG8 . . . B 2 13.009 1.557 -0.957 1 0 ? HH1 IG8 101 A 1 HETATM 26 H HH2 IG8 . . . B 2 12.861 2.482 -2.359 1 0 ? HH2 IG8 101 A 1 HETATM 27 H HI2 IG8 . . . B 2 12.874 0.029 -4.49 1 0 ? HI2 IG8 101 A 1 HETATM 28 H HI3 IG8 . . . B 2 14.741 -0.151 -4.45 1 0 ? HI3 IG8 101 A 1 HETATM 29 H HI1 IG8 . . . B 2 13.907 1.452 -4.546 1 0 ? HI1 IG8 101 A 1 HETATM 30 H HT1 IG8 . . . B 2 13.918 -0.387 -2.185 1 0 ? HT1 IG8 101 A 1 HETATM 31 H HT2 IG8 . . . B 2 14.917 1.007 -2.361 1 0 ? HT2 IG8 101 A 1 # _model_server_stats.io_time_ms 485 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 3456 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #