data_8S2X # _model_server_result.job_id Vh5FFZxWblj9BY1aN5EKBg _model_server_result.datetime_utc '2024-11-21 23:53:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8S2X # _exptl.entry_id 8S2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8S2X _cell.length_a 180.3 _cell.length_b 180.3 _cell.length_c 119.2 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8S2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 8S2X _atom_sites.fract_transf_matrix[1][1] 0.005546 _atom_sites.fract_transf_matrix[1][2] 0.003202 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CIT A 1 301 301 CIT CIT . F 3 PO4 A 1 302 1 PO4 PO4 . G 2 CIT B 1 301 301 CIT CIT . H 3 PO4 B 1 302 3 PO4 PO4 . I 2 CIT C 1 301 301 CIT CIT . J 3 PO4 C 1 302 4 PO4 PO4 . K 2 CIT D 1 301 301 CIT CIT . L 3 PO4 D 1 302 2 PO4 PO4 . M 4 HOH A 1 401 117 HOH HOH . M 4 HOH A 2 402 154 HOH HOH . M 4 HOH A 3 403 155 HOH HOH . M 4 HOH A 4 404 95 HOH HOH . M 4 HOH A 5 405 223 HOH HOH . M 4 HOH A 6 406 69 HOH HOH . M 4 HOH A 7 407 31 HOH HOH . M 4 HOH A 8 408 209 HOH HOH . M 4 HOH A 9 409 110 HOH HOH . M 4 HOH A 10 410 120 HOH HOH . M 4 HOH A 11 411 89 HOH HOH . M 4 HOH A 12 412 177 HOH HOH . M 4 HOH A 13 413 109 HOH HOH . M 4 HOH A 14 414 98 HOH HOH . M 4 HOH A 15 415 61 HOH HOH . M 4 HOH A 16 416 106 HOH HOH . M 4 HOH A 17 417 163 HOH HOH . M 4 HOH A 18 418 29 HOH HOH . M 4 HOH A 19 419 115 HOH HOH . M 4 HOH A 20 420 172 HOH HOH . M 4 HOH A 21 421 165 HOH HOH . M 4 HOH A 22 422 174 HOH HOH . M 4 HOH A 23 423 19 HOH HOH . M 4 HOH A 24 424 167 HOH HOH . M 4 HOH A 25 425 53 HOH HOH . M 4 HOH A 26 426 100 HOH HOH . M 4 HOH A 27 427 91 HOH HOH . M 4 HOH A 28 428 7 HOH HOH . M 4 HOH A 29 429 54 HOH HOH . M 4 HOH A 30 430 68 HOH HOH . M 4 HOH A 31 431 153 HOH HOH . M 4 HOH A 32 432 147 HOH HOH . M 4 HOH A 33 433 41 HOH HOH . M 4 HOH A 34 434 87 HOH HOH . M 4 HOH A 35 435 3 HOH HOH . M 4 HOH A 36 436 159 HOH HOH . M 4 HOH A 37 437 139 HOH HOH . M 4 HOH A 38 438 48 HOH HOH . M 4 HOH A 39 439 119 HOH HOH . M 4 HOH A 40 440 126 HOH HOH . M 4 HOH A 41 441 127 HOH HOH . M 4 HOH A 42 442 130 HOH HOH . M 4 HOH A 43 443 213 HOH HOH . N 4 HOH B 1 401 178 HOH HOH . N 4 HOH B 2 402 27 HOH HOH . N 4 HOH B 3 403 134 HOH HOH . N 4 HOH B 4 404 189 HOH HOH . N 4 HOH B 5 405 107 HOH HOH . N 4 HOH B 6 406 82 HOH HOH . N 4 HOH B 7 407 72 HOH HOH . N 4 HOH B 8 408 212 HOH HOH . N 4 HOH B 9 409 99 HOH HOH . N 4 HOH B 10 410 143 HOH HOH . N 4 HOH B 11 411 71 HOH HOH . N 4 HOH B 12 412 96 HOH HOH . N 4 HOH B 13 413 157 HOH HOH . N 4 HOH B 14 414 5 HOH HOH . N 4 HOH B 15 415 208 HOH HOH . N 4 HOH B 16 416 13 HOH HOH . N 4 HOH B 17 417 121 HOH HOH . N 4 HOH B 18 418 85 HOH HOH . N 4 HOH B 19 419 114 HOH HOH . N 4 HOH B 20 420 201 HOH HOH . N 4 HOH B 21 421 22 HOH HOH . N 4 HOH B 22 422 138 HOH HOH . N 4 HOH B 23 423 175 HOH HOH . N 4 HOH B 24 424 17 HOH HOH . N 4 HOH B 25 425 57 HOH HOH . N 4 HOH B 26 426 133 HOH HOH . N 4 HOH B 27 427 145 HOH HOH . N 4 HOH B 28 428 8 HOH HOH . N 4 HOH B 29 429 36 HOH HOH . N 4 HOH B 30 430 151 HOH HOH . N 4 HOH B 31 431 33 HOH HOH . N 4 HOH B 32 432 135 HOH HOH . N 4 HOH B 33 433 60 HOH HOH . N 4 HOH B 34 434 80 HOH HOH . N 4 HOH B 35 435 58 HOH HOH . N 4 HOH B 36 436 49 HOH HOH . N 4 HOH B 37 437 170 HOH HOH . N 4 HOH B 38 438 166 HOH HOH . N 4 HOH B 39 439 55 HOH HOH . N 4 HOH B 40 440 43 HOH HOH . N 4 HOH B 41 441 75 HOH HOH . N 4 HOH B 42 442 56 HOH HOH . N 4 HOH B 43 443 9 HOH HOH . N 4 HOH B 44 444 37 HOH HOH . N 4 HOH B 45 445 35 HOH HOH . N 4 HOH B 46 446 146 HOH HOH . N 4 HOH B 47 447 125 HOH HOH . N 4 HOH B 48 448 128 HOH HOH . N 4 HOH B 49 449 182 HOH HOH . O 4 HOH C 1 401 32 HOH HOH . O 4 HOH C 2 402 15 HOH HOH . O 4 HOH C 3 403 97 HOH HOH . O 4 HOH C 4 404 77 HOH HOH . O 4 HOH C 5 405 12 HOH HOH . O 4 HOH C 6 406 34 HOH HOH . O 4 HOH C 7 407 210 HOH HOH . O 4 HOH C 8 408 195 HOH HOH . O 4 HOH C 9 409 202 HOH HOH . O 4 HOH C 10 410 11 HOH HOH . O 4 HOH C 11 411 176 HOH HOH . O 4 HOH C 12 412 46 HOH HOH . O 4 HOH C 13 413 188 HOH HOH . O 4 HOH C 14 414 6 HOH HOH . O 4 HOH C 15 415 158 HOH HOH . O 4 HOH C 16 416 94 HOH HOH . O 4 HOH C 17 417 63 HOH HOH . O 4 HOH C 18 418 111 HOH HOH . O 4 HOH C 19 419 42 HOH HOH . O 4 HOH C 20 420 116 HOH HOH . O 4 HOH C 21 421 123 HOH HOH . O 4 HOH C 22 422 136 HOH HOH . O 4 HOH C 23 423 221 HOH HOH . O 4 HOH C 24 424 20 HOH HOH . O 4 HOH C 25 425 105 HOH HOH . O 4 HOH C 26 426 92 HOH HOH . O 4 HOH C 27 427 47 HOH HOH . O 4 HOH C 28 428 66 HOH HOH . O 4 HOH C 29 429 1 HOH HOH . O 4 HOH C 30 430 137 HOH HOH . O 4 HOH C 31 431 168 HOH HOH . O 4 HOH C 32 432 83 HOH HOH . O 4 HOH C 33 433 150 HOH HOH . O 4 HOH C 34 434 81 HOH HOH . O 4 HOH C 35 435 23 HOH HOH . O 4 HOH C 36 436 164 HOH HOH . O 4 HOH C 37 437 140 HOH HOH . O 4 HOH C 38 438 103 HOH HOH . O 4 HOH C 39 439 190 HOH HOH . O 4 HOH C 40 440 16 HOH HOH . O 4 HOH C 41 441 160 HOH HOH . O 4 HOH C 42 442 67 HOH HOH . O 4 HOH C 43 443 122 HOH HOH . O 4 HOH C 44 444 148 HOH HOH . O 4 HOH C 45 445 149 HOH HOH . O 4 HOH C 46 446 183 HOH HOH . P 4 HOH D 1 401 93 HOH HOH . P 4 HOH D 2 402 169 HOH HOH . P 4 HOH D 3 403 78 HOH HOH . P 4 HOH D 4 404 113 HOH HOH . P 4 HOH D 5 405 62 HOH HOH . P 4 HOH D 6 406 52 HOH HOH . P 4 HOH D 7 407 118 HOH HOH . P 4 HOH D 8 408 59 HOH HOH . P 4 HOH D 9 409 102 HOH HOH . P 4 HOH D 10 410 2 HOH HOH . P 4 HOH D 11 411 64 HOH HOH . P 4 HOH D 12 412 18 HOH HOH . P 4 HOH D 13 413 161 HOH HOH . P 4 HOH D 14 414 142 HOH HOH . P 4 HOH D 15 415 108 HOH HOH . P 4 HOH D 16 416 156 HOH HOH . P 4 HOH D 17 417 70 HOH HOH . P 4 HOH D 18 418 112 HOH HOH . P 4 HOH D 19 419 171 HOH HOH . P 4 HOH D 20 420 104 HOH HOH . P 4 HOH D 21 421 79 HOH HOH . P 4 HOH D 22 422 45 HOH HOH . P 4 HOH D 23 423 203 HOH HOH . P 4 HOH D 24 424 90 HOH HOH . P 4 HOH D 25 425 88 HOH HOH . P 4 HOH D 26 426 73 HOH HOH . P 4 HOH D 27 427 26 HOH HOH . P 4 HOH D 28 428 65 HOH HOH . P 4 HOH D 29 429 132 HOH HOH . P 4 HOH D 30 430 173 HOH HOH . P 4 HOH D 31 431 10 HOH HOH . P 4 HOH D 32 432 141 HOH HOH . P 4 HOH D 33 433 14 HOH HOH . P 4 HOH D 34 434 76 HOH HOH . P 4 HOH D 35 435 220 HOH HOH . P 4 HOH D 36 436 101 HOH HOH . P 4 HOH D 37 437 74 HOH HOH . P 4 HOH D 38 438 50 HOH HOH . P 4 HOH D 39 439 222 HOH HOH . P 4 HOH D 40 440 86 HOH HOH . P 4 HOH D 41 441 144 HOH HOH . P 4 HOH D 42 442 51 HOH HOH . P 4 HOH D 43 443 152 HOH HOH . P 4 HOH D 44 444 44 HOH HOH . P 4 HOH D 45 445 211 HOH HOH . P 4 HOH D 46 446 131 HOH HOH . P 4 HOH D 47 447 180 HOH HOH . P 4 HOH D 48 448 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . E 2 -12.22 -26.89 -26.382 1 108.24 ? C1 CIT 301 A 1 HETATM 2 O O1 CIT . . . E 2 -11.969 -25.672 -26.574 1 107.62 ? O1 CIT 301 A 1 HETATM 3 O O2 CIT . . . E 2 -12.735 -27.344 -25.319 1 98.62 ? O2 CIT 301 A 1 HETATM 4 C C2 CIT . . . E 2 -11.907 -27.855 -27.519 1 92.44 ? C2 CIT 301 A 1 HETATM 5 C C3 CIT . . . E 2 -12.639 -27.547 -28.835 1 84.96 ? C3 CIT 301 A 1 HETATM 6 O O7 CIT . . . E 2 -13.855 -26.894 -28.506 1 87.48 ? O7 CIT 301 A 1 HETATM 7 C C4 CIT . . . E 2 -11.761 -26.607 -29.683 1 89.72 ? C4 CIT 301 A 1 HETATM 8 C C5 CIT . . . E 2 -12.356 -26.079 -30.983 1 91.73 ? C5 CIT 301 A 1 HETATM 9 O O3 CIT . . . E 2 -11.773 -26.358 -32.07 1 92.49 ? O3 CIT 301 A 1 HETATM 10 O O4 CIT . . . E 2 -13.384 -25.368 -30.908 1 88.51 ? O4 CIT 301 A 1 HETATM 11 C C6 CIT . . . E 2 -12.948 -28.859 -29.611 1 72.15 ? C6 CIT 301 A 1 HETATM 12 O O5 CIT . . . E 2 -14.095 -28.971 -30.03 1 70.54 ? O5 CIT 301 A 1 HETATM 13 O O6 CIT . . . E 2 -12.054 -29.724 -29.767 1 68.49 ? O6 CIT 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #