data_8S3X # _model_server_result.job_id WXS9efSQYaeors1_I0Ia8Q _model_server_result.datetime_utc '2025-09-04 15:06:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 8S3X # _exptl.entry_id 8S3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 465.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(5-cyclopropyl-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-~{N}-[3-(3-methoxyphenyl)phenyl]-3,6-dihydro-2~{H}-pyridine-1-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.38 _cell.angle_gamma 90 _cell.entry_id 8S3X _cell.length_a 86.911 _cell.length_b 86.921 _cell.length_c 103.297 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8S3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I,K 1 1 B,D,F,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C28 H27 N5 O2' _chem_comp.formula_weight 465.546 _chem_comp.id A1H41 _chem_comp.mon_nstd_flag . _chem_comp.name 4-(5-cyclopropyl-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-~{N}-[3-(3-methoxyphenyl)phenyl]-3,6-dihydro-2~{H}-pyridine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O A1H41 sing 1 n n O C1 A1H41 sing 2 n n C1 C2 A1H41 doub 3 n y C2 C3 A1H41 sing 4 n y C3 C4 A1H41 doub 5 n y C4 C5 A1H41 sing 6 n y C6 C5 A1H41 doub 7 n y C1 C6 A1H41 sing 8 n y C5 C7 A1H41 sing 9 n n C7 C8 A1H41 doub 10 n y C8 C9 A1H41 sing 11 n y C9 C10 A1H41 doub 12 n y C10 C11 A1H41 sing 13 n y C11 N A1H41 sing 14 n n N C12 A1H41 sing 15 n n C12 O1 A1H41 doub 16 n n N1 C12 A1H41 sing 17 n n N1 C13 A1H41 sing 18 n n C13 C14 A1H41 sing 19 n n C14 C15 A1H41 sing 20 n n C15 C16 A1H41 doub 21 n n C16 C17 A1H41 sing 22 n n C17 N1 A1H41 sing 23 n n C18 C15 A1H41 sing 24 n n C18 N2 A1H41 doub 25 n y N2 C19 A1H41 sing 26 n y C19 N3 A1H41 doub 27 n y N3 C20 A1H41 sing 28 n y C20 N4 A1H41 sing 29 n y N4 C21 A1H41 sing 30 n y C21 C22 A1H41 doub 31 n y C23 C22 A1H41 sing 32 n n C23 C24 A1H41 sing 33 n n C24 C25 A1H41 sing 34 n n C25 C23 A1H41 sing 35 n n C22 C26 A1H41 sing 36 n y C26 C18 A1H41 sing 37 n y C20 C26 A1H41 doub 38 n y C27 C11 A1H41 doub 39 n y C7 C27 A1H41 sing 40 n y N H11 A1H41 sing 41 n n C2 H4 A1H41 sing 42 n n C3 H5 A1H41 sing 43 n n C4 H6 A1H41 sing 44 n n C H3 A1H41 sing 45 n n C H1 A1H41 sing 46 n n C H2 A1H41 sing 47 n n C10 H10 A1H41 sing 48 n n C13 H13 A1H41 sing 49 n n C13 H12 A1H41 sing 50 n n C14 H15 A1H41 sing 51 n n C14 H14 A1H41 sing 52 n n C16 H16 A1H41 sing 53 n n C17 H18 A1H41 sing 54 n n C17 H17 A1H41 sing 55 n n C19 H19 A1H41 sing 56 n n C21 H20 A1H41 sing 57 n n C23 H21 A1H41 sing 58 n n C24 H23 A1H41 sing 59 n n C24 H22 A1H41 sing 60 n n C25 H25 A1H41 sing 61 n n C25 H24 A1H41 sing 62 n n C27 H26 A1H41 sing 63 n n C6 H7 A1H41 sing 64 n n C8 H8 A1H41 sing 65 n n C9 H9 A1H41 sing 66 n n N4 H A1H41 sing 67 n n # _atom_sites.entry_id 8S3X _atom_sites.fract_transf_matrix[1][1] 0.011506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000881 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 A1H41 A 1 701 2 A1H41 144 . F 2 A1H41 B 1 701 1 A1H41 144 . G 2 A1H41 C 1 701 3 A1H41 144 . H 2 A1H41 D 1 701 4 A1H41 144 . I 3 HOH A 1 801 9 HOH HOH . I 3 HOH A 2 802 12 HOH HOH . I 3 HOH A 3 803 8 HOH HOH . I 3 HOH A 4 804 2 HOH HOH . J 3 HOH B 1 801 7 HOH HOH . J 3 HOH B 2 802 4 HOH HOH . J 3 HOH B 3 803 1 HOH HOH . K 3 HOH C 1 801 10 HOH HOH . K 3 HOH C 2 802 6 HOH HOH . K 3 HOH C 3 803 13 HOH HOH . L 3 HOH D 1 801 11 HOH HOH . L 3 HOH D 2 802 3 HOH HOH . L 3 HOH D 3 803 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1H41 . . . E 2 0.026 20.066 9.581 1 36.77 ? C1 A1H41 701 A 1 HETATM 2 N N A1H41 . . . E 2 -6.582 16.981 8.918 1 32.65 ? N A1H41 701 A 1 HETATM 3 C C2 A1H41 . . . E 2 0.482 19.072 10.435 1 38.09 ? C2 A1H41 701 A 1 HETATM 4 C C3 A1H41 . . . E 2 -0.413 18.12 10.9 1 36.65 ? C3 A1H41 701 A 1 HETATM 5 C C4 A1H41 . . . E 2 -1.743 18.161 10.519 1 32.94 ? C4 A1H41 701 A 1 HETATM 6 C C A1H41 . . . E 2 2.233 20.971 9.326 1 37.52 ? C A1H41 701 A 1 HETATM 7 O O A1H41 . . . E 2 0.835 21.04 9.054 1 38.1 ? O A1H41 701 A 1 HETATM 8 C C10 A1H41 . . . E 2 -6.348 19.366 8.593 1 34.91 ? C10 A1H41 701 A 1 HETATM 9 C C11 A1H41 . . . E 2 -5.787 18.147 8.948 1 31.93 ? C11 A1H41 701 A 1 HETATM 10 C C12 A1H41 . . . E 2 -7.923 16.904 9.154 1 38.34 ? C12 A1H41 701 A 1 HETATM 11 C C13 A1H41 . . . E 2 -9.846 15.381 9.467 1 37.77 ? C13 A1H41 701 A 1 HETATM 12 C C14 A1H41 . . . E 2 -10.716 15.079 8.26 1 43.07 ? C14 A1H41 701 A 1 HETATM 13 C C15 A1H41 . . . E 2 -10.079 14.012 7.425 1 42.39 ? C15 A1H41 701 A 1 HETATM 14 C C16 A1H41 . . . E 2 -8.752 13.847 7.428 1 38.4 ? C16 A1H41 701 A 1 HETATM 15 C C17 A1H41 . . . E 2 -7.788 14.649 8.24 1 37.07 ? C17 A1H41 701 A 1 HETATM 16 C C18 A1H41 . . . E 2 -10.877 13.131 6.534 1 46.45 ? C18 A1H41 701 A 1 HETATM 17 C C19 A1H41 . . . E 2 -11.008 12.359 4.4 1 49.07 ? C19 A1H41 701 A 1 HETATM 18 C C20 A1H41 . . . E 2 -12.609 11.718 5.819 1 52.48 ? C20 A1H41 701 A 1 HETATM 19 C C21 A1H41 . . . E 2 -13.908 11.357 7.582 1 53.63 ? C21 A1H41 701 A 1 HETATM 20 C C22 A1H41 . . . E 2 -12.932 12.202 8.025 1 52.19 ? C22 A1H41 701 A 1 HETATM 21 C C23 A1H41 . . . E 2 -12.851 12.858 9.38 1 49.08 ? C23 A1H41 701 A 1 HETATM 22 C C24 A1H41 . . . E 2 -11.799 12.434 10.367 1 45.19 ? C24 A1H41 701 A 1 HETATM 23 C C25 A1H41 . . . E 2 -13.215 12.087 10.619 1 47.42 ? C25 A1H41 701 A 1 HETATM 24 C C26 A1H41 . . . E 2 -12.061 12.438 6.897 1 49.2 ? C26 A1H41 701 A 1 HETATM 25 C C27 A1H41 . . . E 2 -4.439 18.082 9.283 1 30.75 ? C27 A1H41 701 A 1 HETATM 26 C C5 A1H41 . . . E 2 -2.208 19.159 9.662 1 34.98 ? C5 A1H41 701 A 1 HETATM 27 C C6 A1H41 . . . E 2 -1.306 20.117 9.195 1 34.8 ? C6 A1H41 701 A 1 HETATM 28 C C7 A1H41 . . . E 2 -3.636 19.223 9.262 1 32.93 ? C7 A1H41 701 A 1 HETATM 29 C C8 A1H41 . . . E 2 -4.216 20.433 8.887 1 33.41 ? C8 A1H41 701 A 1 HETATM 30 C C9 A1H41 . . . E 2 -5.559 20.502 8.561 1 35.9 ? C9 A1H41 701 A 1 HETATM 31 N N1 A1H41 . . . E 2 -8.469 15.663 9.049 1 38.68 ? N1 A1H41 701 A 1 HETATM 32 N N2 A1H41 . . . E 2 -10.346 13.082 5.3 1 47.93 ? N2 A1H41 701 A 1 HETATM 33 N N3 A1H41 . . . E 2 -12.128 11.66 4.565 1 51.9 ? N3 A1H41 701 A 1 HETATM 34 N N4 A1H41 . . . E 2 -13.728 11.066 6.255 1 56.09 ? N4 A1H41 701 A 1 HETATM 35 O O1 A1H41 . . . E 2 -8.615 17.87 9.451 1 39.98 ? O1 A1H41 701 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #