data_8S3X
#
_model_server_result.job_id            iqIJDnJWCPqE8y1VPn3nQg 
_model_server_result.datetime_utc      '2025-09-04 14:56:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8s3x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":701}' 
#
_entry.id    8S3X 
#
_exptl.entry_id    8S3X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              465.546 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(5-cyclopropyl-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-~{N}-[3-(3-methoxyphenyl)phenyl]-3,6-dihydro-2~{H}-pyridine-1-carboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.38 
_cell.angle_gamma         90 
_cell.entry_id            8S3X 
_cell.length_a            86.911 
_cell.length_b            86.921 
_cell.length_c            103.297 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8S3X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I,K 1 1 
B,D,F,H,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C28 H27 N5 O2' 
_chem_comp.formula_weight    465.546 
_chem_comp.id                A1H41 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(5-cyclopropyl-7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-~{N}-[3-(3-methoxyphenyl)phenyl]-3,6-dihydro-2~{H}-pyridine-1-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O A1H41 sing 1 n n 
O C1 A1H41 sing 2 n n 
C1 C2 A1H41 doub 3 n y 
C2 C3 A1H41 sing 4 n y 
C3 C4 A1H41 doub 5 n y 
C4 C5 A1H41 sing 6 n y 
C6 C5 A1H41 doub 7 n y 
C1 C6 A1H41 sing 8 n y 
C5 C7 A1H41 sing 9 n n 
C7 C8 A1H41 doub 10 n y 
C8 C9 A1H41 sing 11 n y 
C9 C10 A1H41 doub 12 n y 
C10 C11 A1H41 sing 13 n y 
C11 N A1H41 sing 14 n n 
N C12 A1H41 sing 15 n n 
C12 O1 A1H41 doub 16 n n 
N1 C12 A1H41 sing 17 n n 
N1 C13 A1H41 sing 18 n n 
C13 C14 A1H41 sing 19 n n 
C14 C15 A1H41 sing 20 n n 
C15 C16 A1H41 doub 21 n n 
C16 C17 A1H41 sing 22 n n 
C17 N1 A1H41 sing 23 n n 
C18 C15 A1H41 sing 24 n n 
C18 N2 A1H41 doub 25 n y 
N2 C19 A1H41 sing 26 n y 
C19 N3 A1H41 doub 27 n y 
N3 C20 A1H41 sing 28 n y 
C20 N4 A1H41 sing 29 n y 
N4 C21 A1H41 sing 30 n y 
C21 C22 A1H41 doub 31 n y 
C23 C22 A1H41 sing 32 n n 
C23 C24 A1H41 sing 33 n n 
C24 C25 A1H41 sing 34 n n 
C25 C23 A1H41 sing 35 n n 
C22 C26 A1H41 sing 36 n y 
C26 C18 A1H41 sing 37 n y 
C20 C26 A1H41 doub 38 n y 
C27 C11 A1H41 doub 39 n y 
C7 C27 A1H41 sing 40 n y 
N H11 A1H41 sing 41 n n 
C2 H4 A1H41 sing 42 n n 
C3 H5 A1H41 sing 43 n n 
C4 H6 A1H41 sing 44 n n 
C H3 A1H41 sing 45 n n 
C H1 A1H41 sing 46 n n 
C H2 A1H41 sing 47 n n 
C10 H10 A1H41 sing 48 n n 
C13 H13 A1H41 sing 49 n n 
C13 H12 A1H41 sing 50 n n 
C14 H15 A1H41 sing 51 n n 
C14 H14 A1H41 sing 52 n n 
C16 H16 A1H41 sing 53 n n 
C17 H18 A1H41 sing 54 n n 
C17 H17 A1H41 sing 55 n n 
C19 H19 A1H41 sing 56 n n 
C21 H20 A1H41 sing 57 n n 
C23 H21 A1H41 sing 58 n n 
C24 H23 A1H41 sing 59 n n 
C24 H22 A1H41 sing 60 n n 
C25 H25 A1H41 sing 61 n n 
C25 H24 A1H41 sing 62 n n 
C27 H26 A1H41 sing 63 n n 
C6 H7 A1H41 sing 64 n n 
C8 H8 A1H41 sing 65 n n 
C9 H9 A1H41 sing 66 n n 
N4 H A1H41 sing 67 n n 
#
_atom_sites.entry_id                     8S3X 
_atom_sites.fract_transf_matrix[1][1]    0.011506 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000881 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011505 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009709 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 A1H41 A 1 701 2 A1H41 144 . 
F 2 A1H41 B 1 701 1 A1H41 144 . 
G 2 A1H41 C 1 701 3 A1H41 144 . 
H 2 A1H41 D 1 701 4 A1H41 144 . 
I 3 HOH A 1 801 9 HOH HOH . 
I 3 HOH A 2 802 12 HOH HOH . 
I 3 HOH A 3 803 8 HOH HOH . 
I 3 HOH A 4 804 2 HOH HOH . 
J 3 HOH B 1 801 7 HOH HOH . 
J 3 HOH B 2 802 4 HOH HOH . 
J 3 HOH B 3 803 1 HOH HOH . 
K 3 HOH C 1 801 10 HOH HOH . 
K 3 HOH C 2 802 6 HOH HOH . 
K 3 HOH C 3 803 13 HOH HOH . 
L 3 HOH D 1 801 11 HOH HOH . 
L 3 HOH D 2 802 3 HOH HOH . 
L 3 HOH D 3 803 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 A1H41 . . . H 2 40.094 29.501 42.043 1 44.62 ? C1 A1H41 701 D 1 
HETATM 2 N N A1H41 . . . H 2 33.403 32.387 41.383 1 43.17 ? N A1H41 701 D 1 
HETATM 3 C C2 A1H41 . . . H 2 40.669 30.478 41.246 1 46.84 ? C2 A1H41 701 D 1 
HETATM 4 C C3 A1H41 . . . H 2 39.847 31.38 40.593 1 48.47 ? C3 A1H41 701 D 1 
HETATM 5 C C4 A1H41 . . . H 2 38.471 31.309 40.734 1 43.99 ? C4 A1H41 701 D 1 
HETATM 6 C C A1H41 . . . H 2 42.254 28.501 42.292 1 47.75 ? C A1H41 701 D 1 
HETATM 7 O O A1H41 . . . H 2 40.887 28.59 42.687 1 45.65 ? O A1H41 701 D 1 
HETATM 8 C C10 A1H41 . . . H 2 33.629 30.025 41.846 1 45.81 ? C10 A1H41 701 D 1 
HETATM 9 C C11 A1H41 . . . H 2 34.216 31.244 41.53 1 43.11 ? C11 A1H41 701 D 1 
HETATM 10 C C12 A1H41 . . . H 2 32.176 32.41 40.802 1 50.08 ? C12 A1H41 701 D 1 
HETATM 11 C C13 A1H41 . . . H 2 32.153 34.766 41.469 1 51.77 ? C13 A1H41 701 D 1 
HETATM 12 C C14 A1H41 . . . H 2 31.335 35.179 42.685 1 52.24 ? C14 A1H41 701 D 1 
HETATM 13 C C15 A1H41 . . . H 2 29.886 35.317 42.321 1 55.9 ? C15 A1H41 701 D 1 
HETATM 14 C C16 A1H41 . . . H 2 29.38 34.653 41.265 1 56.49 ? C16 A1H41 701 D 1 
HETATM 15 C C17 A1H41 . . . H 2 30.159 33.771 40.342 1 51.62 ? C17 A1H41 701 D 1 
HETATM 16 C C18 A1H41 . . . H 2 29.019 36.167 43.177 1 58.69 ? C18 A1H41 701 D 1 
HETATM 17 C C19 A1H41 . . . H 2 28.479 36.556 45.351 1 63.16 ? C19 A1H41 701 D 1 
HETATM 18 C C20 A1H41 . . . H 2 27.123 37.408 43.794 1 64.11 ? C20 A1H41 701 D 1 
HETATM 19 C C21 A1H41 . . . H 2 26.179 38.097 41.91 1 65.46 ? C21 A1H41 701 D 1 
HETATM 20 C C22 A1H41 . . . H 2 27.296 37.414 41.523 1 63.44 ? C22 A1H41 701 D 1 
HETATM 21 C C23 A1H41 . . . H 2 27.85 37.299 40.128 1 61.67 ? C23 A1H41 701 D 1 
HETATM 22 C C24 A1H41 . . . H 2 27.038 37.777 38.956 1 66.98 ? C24 A1H41 701 D 1 
HETATM 23 C C25 A1H41 . . . H 2 27.248 36.327 39.151 1 61.87 ? C25 A1H41 701 D 1 
HETATM 24 C C26 A1H41 . . . H 2 27.91 36.93 42.731 1 59.18 ? C26 A1H41 701 D 1 
HETATM 25 C C27 A1H41 . . . H 2 35.599 31.335 41.427 1 43.43 ? C27 A1H41 701 D 1 
HETATM 26 C C5 A1H41 . . . H 2 37.887 30.328 41.534 1 43.9 ? C5 A1H41 701 D 1 
HETATM 27 C C6 A1H41 . . . H 2 38.717 29.422 42.196 1 42.6 ? C6 A1H41 701 D 1 
HETATM 28 C C7 A1H41 . . . H 2 36.413 30.225 41.659 1 43.21 ? C7 A1H41 701 D 1 
HETATM 29 C C8 A1H41 . . . H 2 35.805 29.017 41.994 1 42.65 ? C8 A1H41 701 D 1 
HETATM 30 C C9 A1H41 . . . H 2 34.427 28.919 42.078 1 46.54 ? C9 A1H41 701 D 1 
HETATM 31 N N1 A1H41 . . . H 2 31.548 33.618 40.785 1 49.68 ? N1 A1H41 701 D 1 
HETATM 32 N N2 A1H41 . . . H 2 29.322 36.007 44.477 1 62.86 ? N2 A1H41 701 D 1 
HETATM 33 N N3 A1H41 . . . H 2 27.365 37.245 45.105 1 66.31 ? N3 A1H41 701 D 1 
HETATM 34 N N4 A1H41 . . . H 2 26.07 38.102 43.273 1 66.43 ? N4 A1H41 701 D 1 
HETATM 35 O O1 A1H41 . . . H 2 31.654 31.417 40.307 1 52.73 ? O1 A1H41 701 D 1 
#
_model_server_stats.io_time_ms              96 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#