data_8S45 # _model_server_result.job_id ttcD55cxtTYVmv0fcaw9MQ _model_server_result.datetime_utc '2024-11-16 01:38:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s45 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8S45 # _exptl.entry_id 8S45 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 253.317 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description (1~{R},2~{S},3~{S},4~{R},5~{S})-2-azanyl-4-phenylsulfanyl-6,8-dioxabicyclo[3.2.1]octan-3-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8S45 _cell.length_a 41.75 _cell.length_b 64.71 _cell.length_c 129.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8S45 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,C,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H15 N O3 S' _chem_comp.formula_weight 253.317 _chem_comp.id G3Y _chem_comp.mon_nstd_flag . _chem_comp.name (1~{R},2~{S},3~{S},4~{R},5~{S})-2-azanyl-4-phenylsulfanyl-6,8-dioxabicyclo[3.2.1]octan-3-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C7 G3Y sing 70 n n C5 C4 G3Y doub 71 n y C5 C G3Y sing 72 n y O1 C11 G3Y sing 73 n n O1 C9 G3Y sing 74 n n C11 C6 G3Y sing 75 n n C11 O G3Y sing 76 n n C4 C3 G3Y sing 77 n y C6 C7 G3Y sing 78 n n C6 S G3Y sing 79 n n C C1 G3Y doub 80 n y C7 C8 G3Y sing 81 n n C9 C8 G3Y sing 82 n n C9 C10 G3Y sing 83 n n O C10 G3Y sing 84 n n C3 S G3Y sing 85 n n C3 C2 G3Y doub 86 n y C8 N G3Y sing 87 n n C1 C2 G3Y sing 88 n y C4 H1 G3Y sing 89 n n C5 H2 G3Y sing 90 n n C6 H3 G3Y sing 91 n n C7 H4 G3Y sing 92 n n C8 H5 G3Y sing 93 n n C9 H6 G3Y sing 94 n n C10 H7 G3Y sing 95 n n C10 H8 G3Y sing 96 n n C11 H9 G3Y sing 97 n n O2 H10 G3Y sing 98 n n N H11 G3Y sing 99 n n N H12 G3Y sing 100 n n C2 H14 G3Y sing 101 n n C1 H15 G3Y sing 102 n n C H16 G3Y sing 103 n n # _atom_sites.entry_id 8S45 _atom_sites.fract_transf_matrix[1][1] 0.023952 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G3Y B 1 201 201 G3Y XXX . D 3 HOH A 1 201 188 HOH HOH . D 3 HOH A 2 202 101 HOH HOH . D 3 HOH A 3 203 18 HOH HOH . D 3 HOH A 4 204 62 HOH HOH . D 3 HOH A 5 205 16 HOH HOH . D 3 HOH A 6 206 14 HOH HOH . D 3 HOH A 7 207 138 HOH HOH . D 3 HOH A 8 208 9 HOH HOH . D 3 HOH A 9 209 85 HOH HOH . D 3 HOH A 10 210 97 HOH HOH . D 3 HOH A 11 211 125 HOH HOH . D 3 HOH A 12 212 31 HOH HOH . D 3 HOH A 13 213 12 HOH HOH . D 3 HOH A 14 214 21 HOH HOH . D 3 HOH A 15 215 132 HOH HOH . D 3 HOH A 16 216 73 HOH HOH . D 3 HOH A 17 217 135 HOH HOH . D 3 HOH A 18 218 113 HOH HOH . D 3 HOH A 19 219 53 HOH HOH . D 3 HOH A 20 220 40 HOH HOH . D 3 HOH A 21 221 27 HOH HOH . D 3 HOH A 22 222 131 HOH HOH . D 3 HOH A 23 223 41 HOH HOH . D 3 HOH A 24 224 36 HOH HOH . D 3 HOH A 25 225 90 HOH HOH . D 3 HOH A 26 226 7 HOH HOH . D 3 HOH A 27 227 15 HOH HOH . D 3 HOH A 28 228 26 HOH HOH . D 3 HOH A 29 229 56 HOH HOH . D 3 HOH A 30 230 179 HOH HOH . D 3 HOH A 31 231 60 HOH HOH . D 3 HOH A 32 232 23 HOH HOH . D 3 HOH A 33 233 102 HOH HOH . D 3 HOH A 34 234 66 HOH HOH . D 3 HOH A 35 235 48 HOH HOH . D 3 HOH A 36 236 123 HOH HOH . D 3 HOH A 37 237 96 HOH HOH . D 3 HOH A 38 238 30 HOH HOH . D 3 HOH A 39 239 34 HOH HOH . D 3 HOH A 40 240 37 HOH HOH . D 3 HOH A 41 241 152 HOH HOH . D 3 HOH A 42 242 165 HOH HOH . D 3 HOH A 43 243 124 HOH HOH . D 3 HOH A 44 244 28 HOH HOH . D 3 HOH A 45 245 100 HOH HOH . D 3 HOH A 46 246 71 HOH HOH . D 3 HOH A 47 247 22 HOH HOH . D 3 HOH A 48 248 95 HOH HOH . D 3 HOH A 49 249 115 HOH HOH . D 3 HOH A 50 250 134 HOH HOH . D 3 HOH A 51 251 133 HOH HOH . D 3 HOH A 52 252 116 HOH HOH . D 3 HOH A 53 253 33 HOH HOH . D 3 HOH A 54 254 69 HOH HOH . D 3 HOH A 55 255 88 HOH HOH . D 3 HOH A 56 256 157 HOH HOH . D 3 HOH A 57 257 29 HOH HOH . D 3 HOH A 58 258 109 HOH HOH . D 3 HOH A 59 259 24 HOH HOH . D 3 HOH A 60 260 47 HOH HOH . D 3 HOH A 61 261 70 HOH HOH . D 3 HOH A 62 262 80 HOH HOH . D 3 HOH A 63 263 89 HOH HOH . D 3 HOH A 64 264 46 HOH HOH . D 3 HOH A 65 265 199 HOH HOH . D 3 HOH A 66 266 119 HOH HOH . D 3 HOH A 67 267 76 HOH HOH . D 3 HOH A 68 268 92 HOH HOH . D 3 HOH A 69 269 203 HOH HOH . D 3 HOH A 70 270 142 HOH HOH . D 3 HOH A 71 271 19 HOH HOH . D 3 HOH A 72 272 126 HOH HOH . D 3 HOH A 73 273 169 HOH HOH . D 3 HOH A 74 274 110 HOH HOH . D 3 HOH A 75 275 61 HOH HOH . D 3 HOH A 76 276 75 HOH HOH . D 3 HOH A 77 277 58 HOH HOH . D 3 HOH A 78 278 168 HOH HOH . D 3 HOH A 79 279 78 HOH HOH . D 3 HOH A 80 280 175 HOH HOH . D 3 HOH A 81 281 59 HOH HOH . D 3 HOH A 82 282 141 HOH HOH . D 3 HOH A 83 283 190 HOH HOH . D 3 HOH A 84 284 167 HOH HOH . D 3 HOH A 85 285 67 HOH HOH . D 3 HOH A 86 286 173 HOH HOH . D 3 HOH A 87 287 155 HOH HOH . D 3 HOH A 88 288 160 HOH HOH . D 3 HOH A 89 289 52 HOH HOH . D 3 HOH A 90 290 156 HOH HOH . E 3 HOH B 1 301 20 HOH HOH . E 3 HOH B 2 302 72 HOH HOH . E 3 HOH B 3 303 117 HOH HOH . E 3 HOH B 4 304 112 HOH HOH . E 3 HOH B 5 305 184 HOH HOH . E 3 HOH B 6 306 194 HOH HOH . E 3 HOH B 7 307 42 HOH HOH . E 3 HOH B 8 308 17 HOH HOH . E 3 HOH B 9 309 144 HOH HOH . E 3 HOH B 10 310 8 HOH HOH . E 3 HOH B 11 311 178 HOH HOH . E 3 HOH B 12 312 13 HOH HOH . E 3 HOH B 13 313 87 HOH HOH . E 3 HOH B 14 314 3 HOH HOH . E 3 HOH B 15 315 6 HOH HOH . E 3 HOH B 16 316 98 HOH HOH . E 3 HOH B 17 317 43 HOH HOH . E 3 HOH B 18 318 11 HOH HOH . E 3 HOH B 19 319 86 HOH HOH . E 3 HOH B 20 320 83 HOH HOH . E 3 HOH B 21 321 1 HOH HOH . E 3 HOH B 22 322 162 HOH HOH . E 3 HOH B 23 323 195 HOH HOH . E 3 HOH B 24 324 108 HOH HOH . E 3 HOH B 25 325 107 HOH HOH . E 3 HOH B 26 326 4 HOH HOH . E 3 HOH B 27 327 151 HOH HOH . E 3 HOH B 28 328 45 HOH HOH . E 3 HOH B 29 329 44 HOH HOH . E 3 HOH B 30 330 82 HOH HOH . E 3 HOH B 31 331 25 HOH HOH . E 3 HOH B 32 332 77 HOH HOH . E 3 HOH B 33 333 136 HOH HOH . E 3 HOH B 34 334 63 HOH HOH . E 3 HOH B 35 335 35 HOH HOH . E 3 HOH B 36 336 51 HOH HOH . E 3 HOH B 37 337 2 HOH HOH . E 3 HOH B 38 338 99 HOH HOH . E 3 HOH B 39 339 127 HOH HOH . E 3 HOH B 40 340 182 HOH HOH . E 3 HOH B 41 341 94 HOH HOH . E 3 HOH B 42 342 189 HOH HOH . E 3 HOH B 43 343 74 HOH HOH . E 3 HOH B 44 344 32 HOH HOH . E 3 HOH B 45 345 137 HOH HOH . E 3 HOH B 46 346 191 HOH HOH . E 3 HOH B 47 347 57 HOH HOH . E 3 HOH B 48 348 185 HOH HOH . E 3 HOH B 49 349 201 HOH HOH . E 3 HOH B 50 350 114 HOH HOH . E 3 HOH B 51 351 149 HOH HOH . E 3 HOH B 52 352 10 HOH HOH . E 3 HOH B 53 353 129 HOH HOH . E 3 HOH B 54 354 202 HOH HOH . E 3 HOH B 55 355 170 HOH HOH . E 3 HOH B 56 356 81 HOH HOH . E 3 HOH B 57 357 204 HOH HOH . E 3 HOH B 58 358 122 HOH HOH . E 3 HOH B 59 359 65 HOH HOH . E 3 HOH B 60 360 39 HOH HOH . E 3 HOH B 61 361 64 HOH HOH . E 3 HOH B 62 362 5 HOH HOH . E 3 HOH B 63 363 93 HOH HOH . E 3 HOH B 64 364 111 HOH HOH . E 3 HOH B 65 365 174 HOH HOH . E 3 HOH B 66 366 128 HOH HOH . E 3 HOH B 67 367 50 HOH HOH . E 3 HOH B 68 368 159 HOH HOH . E 3 HOH B 69 369 106 HOH HOH . E 3 HOH B 70 370 91 HOH HOH . E 3 HOH B 71 371 186 HOH HOH . E 3 HOH B 72 372 68 HOH HOH . E 3 HOH B 73 373 103 HOH HOH . E 3 HOH B 74 374 49 HOH HOH . E 3 HOH B 75 375 161 HOH HOH . E 3 HOH B 76 376 121 HOH HOH . E 3 HOH B 77 377 54 HOH HOH . E 3 HOH B 78 378 150 HOH HOH . E 3 HOH B 79 379 120 HOH HOH . E 3 HOH B 80 380 139 HOH HOH . E 3 HOH B 81 381 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 G3Y . . . C 2 -17.727 -26.139 -33.75 1 37.1 ? C4 G3Y 201 B 1 HETATM 2 C C5 G3Y . . . C 2 -18.484 -27.236 -34.127 1 38.72 ? C5 G3Y 201 B 1 HETATM 3 C C6 G3Y . . . C 2 -15.951 -23.783 -33.58 1 41.14 ? C6 G3Y 201 B 1 HETATM 4 C C7 G3Y . . . C 2 -14.677 -24.582 -33.282 1 42.73 ? C7 G3Y 201 B 1 HETATM 5 C C8 G3Y . . . C 2 -13.644 -23.831 -32.444 1 43.02 ? C8 G3Y 201 B 1 HETATM 6 C C9 G3Y . . . C 2 -13.611 -22.339 -32.784 1 38.02 ? C9 G3Y 201 B 1 HETATM 7 C C10 G3Y . . . C 2 -14.619 -21.595 -31.964 1 42.95 ? C10 G3Y 201 B 1 HETATM 8 C C11 G3Y . . . C 2 -15.538 -22.295 -33.928 1 47.35 ? C11 G3Y 201 B 1 HETATM 9 O O2 G3Y . . . C 2 -14.077 -24.918 -34.529 1 50.51 ? O2 G3Y 201 B 1 HETATM 10 N N G3Y . . . C 2 -13.961 -24.017 -30.989 1 43.02 ? N G3Y 201 B 1 HETATM 11 O O1 G3Y . . . C 2 -14.139 -22.129 -34.121 1 45.4 ? O1 G3Y 201 B 1 HETATM 12 O O G3Y . . . C 2 -15.834 -21.695 -32.704 1 45.9 ? O G3Y 201 B 1 HETATM 13 S S G3Y . . . C 2 -17.194 -23.919 -32.233 1 39.34 ? S G3Y 201 B 1 HETATM 14 C C3 G3Y . . . C 2 -18.084 -25.397 -32.632 1 39.41 ? C3 G3Y 201 B 1 HETATM 15 C C2 G3Y . . . C 2 -19.191 -25.782 -31.886 1 34.99 ? C2 G3Y 201 B 1 HETATM 16 C C1 G3Y . . . C 2 -19.945 -26.877 -32.27 1 37.37 ? C1 G3Y 201 B 1 HETATM 17 C C G3Y . . . C 2 -19.596 -27.601 -33.393 1 38.6 ? C G3Y 201 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #