data_8S5I # _model_server_result.job_id 4IclcBBld_QcjO0675W2RA _model_server_result.datetime_utc '2024-12-03 12:23:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 8S5I # _exptl.entry_id 8S5I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8S5I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8S5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 118 A VAL 118 1_555 A N LLP 119 A LLP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C LLP 119 A LLP 119 1_555 A N ASP 120 A ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 B C VAL 118 B VAL 118 1_555 B N LLP 119 B LLP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C LLP 119 B LLP 119 1_555 B N ASP 120 B ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 C C VAL 118 C VAL 118 1_555 C N LLP 119 C LLP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 C C LLP 119 C LLP 119 1_555 C N ASP 120 C ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 D C VAL 118 D VAL 118 1_555 D N LLP 119 D LLP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 D C LLP 119 D LLP 119 1_555 D N ASP 120 D ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 E C VAL 118 E VAL 118 1_555 E N LLP 119 E LLP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 E C LLP 119 E LLP 119 1_555 E N ASP 120 E ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 F C VAL 118 F VAL 118 1_555 F N LLP 119 F LLP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 F C LLP 119 F LLP 119 1_555 F N ASP 120 F ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A NE2 HIS 65 A HIS 65 1_555 G FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc2 B NE2 HIS 65 B HIS 65 1_555 H FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc3 D NE2 HIS 65 D HIS 65 1_555 J FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc4 E NE2 HIS 65 E HIS 65 1_555 K FE HEM . E HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8S5I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 HEM A 1 601 1549 HEM HEM . H 2 HEM B 1 601 1549 HEM HEM . I 2 HEM C 1 601 1549 HEM HEM . J 2 HEM D 1 601 1549 HEM HEM . K 2 HEM E 1 601 1549 HEM HEM . L 2 HEM F 1 601 1549 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 2 157.494 82.402 146.607 1 62.85 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . G 2 159.638 78.184 145.576 1 58.17 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . G 2 156.56 77.616 141.883 1 56.6 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . G 2 155.617 82.362 142.151 1 55.45 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . G 2 158.241 81.253 146.736 1 59.4 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . G 2 158.972 80.825 147.908 1 55.19 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . G 2 159.564 79.663 147.626 1 58.58 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . G 2 159.234 79.308 146.262 1 61.01 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . G 2 160.448 78.842 148.587 1 61.13 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . G 2 159.041 81.586 149.245 1 55.11 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . G 2 160.215 82.554 149.22 1 62.1 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . G 2 160.242 83.337 150.505 1 66.7 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . G 2 161.193 84.136 150.7 1 63.69 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . G 2 159.315 83.162 151.336 1 66.42 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . G 2 158.957 77.616 144.523 1 56.07 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . G 2 159.132 76.279 144 1 58.62 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . G 2 158.281 76.103 142.985 1 59.89 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . G 2 157.537 77.341 142.815 1 58.47 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . G 2 160.127 75.234 144.544 1 62.07 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . G 2 158.17 74.801 142.156 1 60.91 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . G 2 157.161 74.583 141.306 1 59.72 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . G 2 156.051 78.867 141.62 1 54.28 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . G 2 155.148 79.203 140.541 1 52.38 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . G 2 154.885 80.514 140.61 1 51.33 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . G 2 155.617 81.05 141.737 1 51.76 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . G 2 154.611 78.183 139.517 1 54.78 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . G 2 153.979 81.371 139.698 1 54.52 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . G 2 153.239 80.838 138.722 1 55.06 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . G 2 156.096 82.809 143.361 1 57.36 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . G 2 156.178 84.186 143.797 1 55.39 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . G 2 156.701 84.206 145.026 1 54.78 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . G 2 156.958 82.835 145.417 1 58.6 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . G 2 155.743 85.403 142.959 1 59.25 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . G 2 156.967 85.457 145.891 1 55.2 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . G 2 158.454 85.78 145.922 1 56.27 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . G 2 158.679 86.986 146.793 1 62.68 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . G 2 159.848 87.435 146.907 1 63.38 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . G 2 157.688 87.499 147.372 1 62.54 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . G 2 158.426 80.303 145.753 1 62.67 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . G 2 157.977 78.233 143.774 1 57.64 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . G 2 156.318 80.019 142.327 1 58.12 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . G 2 156.581 82.012 144.375 1 57.89 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . G 2 157.362 80.156 144.041 1 85.39 ? FE HEM 601 A 1 HETATM 44 H HHB HEM . . . G 2 160.378 77.669 145.958 1 57.9 ? HHB HEM 601 A 1 HETATM 45 H HHC HEM . . . G 2 156.458 76.965 141.161 1 57.48 ? HHC HEM 601 A 1 HETATM 46 H HHD HEM . . . G 2 155.041 82.977 141.653 1 56.59 ? HHD HEM 601 A 1 HETATM 47 H HMA HEM . . . G 2 161.21 79.388 148.872 1 58.14 ? HMA HEM 601 A 1 HETATM 48 H HMAA HEM . . . G 2 159.923 78.579 149.37 1 58.83 ? HMAA HEM 601 A 1 HETATM 49 H HMAB HEM . . . G 2 160.774 78.042 148.126 1 58.17 ? HMAB HEM 601 A 1 HETATM 50 H HAA HEM . . . G 2 158.217 82.08 149.375 1 57.06 ? HAA HEM 601 A 1 HETATM 51 H HAAA HEM . . . G 2 159.157 80.954 149.97 1 57.7 ? HAAA HEM 601 A 1 HETATM 52 H HBA HEM . . . G 2 161.041 82.056 149.125 1 58.51 ? HBA HEM 601 A 1 HETATM 53 H HBAA HEM . . . G 2 160.114 83.162 148.472 1 58.34 ? HBAA HEM 601 A 1 HETATM 54 H HMB HEM . . . G 2 159.943 75.077 145.483 1 59.17 ? HMB HEM 601 A 1 HETATM 55 H HMBA HEM . . . G 2 160.032 74.403 144.054 1 59.44 ? HMBA HEM 601 A 1 HETATM 56 H HMBB HEM . . . G 2 161.031 75.568 144.443 1 59.97 ? HMBB HEM 601 A 1 HETATM 57 H HAB HEM . . . G 2 158.911 74.192 142.152 1 59.08 ? HAB HEM 601 A 1 HETATM 58 H HBB HEM . . . G 2 157.287 73.986 140.553 1 58.69 ? HBB HEM 601 A 1 HETATM 59 H HBBA HEM . . . G 2 156.304 75.011 141.444 1 58.21 ? HBBA HEM 601 A 1 HETATM 60 H HMC HEM . . . G 2 155.192 77.408 139.5 1 56.81 ? HMC HEM 601 A 1 HETATM 61 H HMCA HEM . . . G 2 153.717 77.912 139.775 1 56.61 ? HMCA HEM 601 A 1 HETATM 62 H HMCB HEM . . . G 2 154.584 78.586 138.637 1 56.96 ? HMCB HEM 601 A 1 HETATM 63 H HAC HEM . . . G 2 153.963 82.32 139.826 1 56.08 ? HAC HEM 601 A 1 HETATM 64 H HBC HEM . . . G 2 152.802 79.988 138.877 1 56.06 ? HBC HEM 601 A 1 HETATM 65 H HBCA HEM . . . G 2 152.882 81.424 138.038 1 54.88 ? HBCA HEM 601 A 1 HETATM 66 H HMD HEM . . . G 2 156.337 85.49 142.185 1 57.16 ? HMD HEM 601 A 1 HETATM 67 H HMDA HEM . . . G 2 154.824 85.271 142.649 1 56.55 ? HMDA HEM 601 A 1 HETATM 68 H HMDB HEM . . . G 2 155.794 86.216 143.5 1 56.87 ? HMDB HEM 601 A 1 HETATM 69 H HAD HEM . . . G 2 156.484 86.213 145.53 1 56.58 ? HAD HEM 601 A 1 HETATM 70 H HADA HEM . . . G 2 156.663 85.288 146.796 1 57.92 ? HADA HEM 601 A 1 HETATM 71 H HBD HEM . . . G 2 158.942 85.024 146.282 1 58.21 ? HBD HEM 601 A 1 HETATM 72 H HBDA HEM . . . G 2 158.763 85.969 145.023 1 57.36 ? HBDA HEM 601 A 1 HETATM 73 H HHA HEM . . . G 2 157.586 83.069 147.317 1 58.78 ? HHA HEM 601 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 73 #