data_8S5L
#
_model_server_result.job_id            dArJ40H2NA2ecYhWxQ-Lyg 
_model_server_result.datetime_utc      '2024-11-14 23:14:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8s5l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":601}' 
#
_entry.id    8S5L 
#
_exptl.entry_id    8S5L 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8S5L 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8S5L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 H N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 119 A VAL 118 1_555 A N LLP 120 A LLP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C LLP 120 A LLP 119 1_555 A N ASP 121 A ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 D C VAL 119 D VAL 118 1_555 D N LLP 120 D LLP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 D C LLP 120 D LLP 119 1_555 D N ASP 121 D ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 A NE2 HIS 66 A HIS 65 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc2 B NE2 HIS 66 B HIS 65 1_555 F FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc3 C NE2 HIS 66 C HIS 65 1_555 H FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc4 D NE2 HIS 66 D HIS 65 1_555 J FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     8S5L 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEM A 1 601 1549 HEM HEM . 
F 3 HEM B 1 601 1549 HEM HEM . 
G 4 PLP B 1 602 1550 PLP PLP . 
H 3 HEM C 1 601 1549 HEM HEM . 
I 4 PLP C 1 602 1550 PLP PLP . 
J 3 HEM D 1 601 1549 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 3 280.876 177.788 214.86 1 66.18 ? CHA HEM 601 C 1 
HETATM 2 C CHB HEM . . . H 3 281.374 175.218 210.806 1 66.18 ? CHB HEM 601 C 1 
HETATM 3 C CHC HEM . . . H 3 276.795 176.256 209.693 1 66.18 ? CHC HEM 601 C 1 
HETATM 4 C CHD HEM . . . H 3 276.739 179.555 213.2 1 66.18 ? CHD HEM 601 C 1 
HETATM 5 C C1A HEM . . . H 3 281.398 176.963 213.897 1 66.18 ? C1A HEM 601 C 1 
HETATM 6 C C2A HEM . . . H 3 282.691 176.319 213.937 1 66.18 ? C2A HEM 601 C 1 
HETATM 7 C C3A HEM . . . H 3 282.827 175.61 212.821 1 66.18 ? C3A HEM 601 C 1 
HETATM 8 C C4A HEM . . . H 3 281.627 175.783 212.031 1 66.18 ? C4A HEM 601 C 1 
HETATM 9 C CMA HEM . . . H 3 284.051 174.755 212.434 1 66.18 ? CMA HEM 601 C 1 
HETATM 10 C CAA HEM . . . H 3 283.718 176.434 215.081 1 66.18 ? CAA HEM 601 C 1 
HETATM 11 C CBA HEM . . . H 3 284.873 177.322 214.636 1 66.18 ? CBA HEM 601 C 1 
HETATM 12 C CGA HEM . . . H 3 285.773 177.614 215.807 1 66.18 ? CGA HEM 601 C 1 
HETATM 13 O O1A HEM . . . H 3 286.948 178.001 215.584 1 66.18 ? O1A HEM 601 C 1 
HETATM 14 O O2A HEM . . . H 3 285.322 177.454 216.969 1 66.18 ? O2A HEM 601 C 1 
HETATM 15 C C1B HEM . . . H 3 280.165 175.255 210.158 1 66.18 ? C1B HEM 601 C 1 
HETATM 16 C C2B HEM . . . H 3 279.833 174.556 208.938 1 66.18 ? C2B HEM 601 C 1 
HETATM 17 C C3B HEM . . . H 3 278.563 174.84 208.634 1 66.18 ? C3B HEM 601 C 1 
HETATM 18 C C4B HEM . . . H 3 278.062 175.733 209.651 1 66.18 ? C4B HEM 601 C 1 
HETATM 19 C CMB HEM . . . H 3 280.813 173.647 208.168 1 66.18 ? CMB HEM 601 C 1 
HETATM 20 C CAB HEM . . . H 3 277.709 174.367 207.436 1 66.18 ? CAB HEM 601 C 1 
HETATM 21 C CBB HEM . . . H 3 278.233 173.727 206.386 1 66.18 ? CBB HEM 601 C 1 
HETATM 22 C C1C HEM . . . H 3 276.378 177.251 210.543 1 66.18 ? C1C HEM 601 C 1 
HETATM 23 C C2C HEM . . . H 3 275.078 177.888 210.538 1 66.18 ? C2C HEM 601 C 1 
HETATM 24 C C3C HEM . . . H 3 275.07 178.793 211.52 1 66.18 ? C3C HEM 601 C 1 
HETATM 25 C C4C HEM . . . H 3 276.36 178.761 212.157 1 66.18 ? C4C HEM 601 C 1 
HETATM 26 C CMC HEM . . . H 3 273.934 177.539 209.562 1 66.18 ? CMC HEM 601 C 1 
HETATM 27 C CAC HEM . . . H 3 273.948 179.761 211.95 1 66.18 ? CAC HEM 601 C 1 
HETATM 28 C CBC HEM . . . H 3 272.837 179.921 211.23 1 66.18 ? CBC HEM 601 C 1 
HETATM 29 C C1D HEM . . . H 3 277.908 179.428 213.89 1 66.18 ? C1D HEM 601 C 1 
HETATM 30 C C2D HEM . . . H 3 278.441 180.386 214.827 1 66.18 ? C2D HEM 601 C 1 
HETATM 31 C C3D HEM . . . H 3 279.587 179.902 215.29 1 66.18 ? C3D HEM 601 C 1 
HETATM 32 C C4D HEM . . . H 3 279.807 178.621 214.659 1 66.18 ? C4D HEM 601 C 1 
HETATM 33 C CMD HEM . . . H 3 277.786 181.73 215.2 1 66.18 ? CMD HEM 601 C 1 
HETATM 34 C CAD HEM . . . H 3 280.52 180.572 216.313 1 66.18 ? CAD HEM 601 C 1 
HETATM 35 C CBD HEM . . . H 3 281.638 181.262 215.547 1 66.18 ? CBD HEM 601 C 1 
HETATM 36 C CGD HEM . . . H 3 282.734 181.669 216.492 1 66.18 ? CGD HEM 601 C 1 
HETATM 37 O O1D HEM . . . H 3 283.705 182.318 216.025 1 66.18 ? O1D HEM 601 C 1 
HETATM 38 O O2D HEM . . . H 3 282.638 181.347 217.705 1 66.18 ? O2D HEM 601 C 1 
HETATM 39 N NA HEM . . . H 3 280.775 176.618 212.72 1 66.18 ? NA HEM 601 C 1 
HETATM 40 N NB HEM . . . H 3 279.062 175.965 210.57 1 66.18 ? NB HEM 601 C 1 
HETATM 41 N NC HEM . . . H 3 277.138 177.808 211.548 1 66.18 ? NC HEM 601 C 1 
HETATM 42 N ND HEM . . . H 3 278.761 178.357 213.808 1 66.18 ? ND HEM 601 C 1 
HETATM 43 FE FE HEM . . . H 3 278.953 177.226 212.16 1 66.18 ? FE HEM 601 C 1 
HETATM 44 H HHB HEM . . . H 3 282.05 174.602 210.453 1 66.18 ? HHB HEM 601 C 1 
HETATM 45 H HHC HEM . . . H 3 276.124 175.86 209.099 1 66.18 ? HHC HEM 601 C 1 
HETATM 46 H HHD HEM . . . H 3 276.128 180.272 213.47 1 66.18 ? HHD HEM 601 C 1 
HETATM 47 H HMA HEM . . . H 3 284.85 175.322 212.4 1 66.18 ? HMA HEM 601 C 1 
HETATM 48 H HMAA HEM . . . H 3 284.18 174.049 213.101 1 66.18 ? HMAA HEM 601 C 1 
HETATM 49 H HMAB HEM . . . H 3 283.902 174.35 211.555 1 66.18 ? HMAB HEM 601 C 1 
HETATM 50 H HAA HEM . . . H 3 283.29 176.822 215.86 1 66.18 ? HAA HEM 601 C 1 
HETATM 51 H HAAA HEM . . . H 3 284.055 175.552 215.303 1 66.18 ? HAAA HEM 601 C 1 
HETATM 52 H HBA HEM . . . H 3 285.381 176.873 213.943 1 66.18 ? HBA HEM 601 C 1 
HETATM 53 H HBAA HEM . . . H 3 284.518 178.154 214.288 1 66.18 ? HBAA HEM 601 C 1 
HETATM 54 H HMB HEM . . . H 3 281.247 174.162 207.469 1 66.18 ? HMB HEM 601 C 1 
HETATM 55 H HMBA HEM . . . H 3 281.484 173.305 208.779 1 66.18 ? HMBA HEM 601 C 1 
HETATM 56 H HMBB HEM . . . H 3 280.332 172.906 207.77 1 66.18 ? HMBB HEM 601 C 1 
HETATM 57 H HAB HEM . . . H 3 276.758 174.496 207.469 1 66.18 ? HAB HEM 601 C 1 
HETATM 58 H HBB HEM . . . H 3 277.641 173.3 205.746 1 66.18 ? HBB HEM 601 C 1 
HETATM 59 H HBBA HEM . . . H 3 279.167 173.847 206.161 1 66.18 ? HBBA HEM 601 C 1 
HETATM 60 H HMC HEM . . . H 3 274.045 176.626 209.254 1 66.18 ? HMC HEM 601 C 1 
HETATM 61 H HMCA HEM . . . H 3 273.079 177.621 210.011 1 66.18 ? HMCA HEM 601 C 1 
HETATM 62 H HMCB HEM . . . H 3 273.964 178.138 208.799 1 66.18 ? HMCB HEM 601 C 1 
HETATM 63 H HAC HEM . . . H 3 274.065 180.286 212.745 1 66.18 ? HAC HEM 601 C 1 
HETATM 64 H HBC HEM . . . H 3 272.894 179.881 210.263 1 66.18 ? HBC HEM 601 C 1 
HETATM 65 H HBCA HEM . . . H 3 272.108 180.422 211.627 1 66.18 ? HBCA HEM 601 C 1 
HETATM 66 H HMD HEM . . . H 3 276.835 181.589 215.385 1 66.18 ? HMD HEM 601 C 1 
HETATM 67 H HMDA HEM . . . H 3 278.22 182.108 215.993 1 66.18 ? HMDA HEM 601 C 1 
HETATM 68 H HMDB HEM . . . H 3 277.878 182.354 214.449 1 66.18 ? HMDB HEM 601 C 1 
HETATM 69 H HAD HEM . . . H 3 280.03 181.223 216.837 1 66.18 ? HAD HEM 601 C 1 
HETATM 70 H HADA HEM . . . H 3 280.893 179.896 216.901 1 66.18 ? HADA HEM 601 C 1 
HETATM 71 H HBD HEM . . . H 3 281.997 180.652 214.884 1 66.18 ? HBD HEM 601 C 1 
HETATM 72 H HBDA HEM . . . H 3 281.286 182.049 215.103 1 66.18 ? HBDA HEM 601 C 1 
HETATM 73 H HHA HEM . . . H 3 281.438 177.971 215.641 1 66.18 ? HHA HEM 601 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    290 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          47 
_model_server_stats.element_count           73 
#