data_8S6J # _model_server_result.job_id PeFS8xkwMoptD08u0rIusg _model_server_result.datetime_utc '2024-10-12 09:21:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s6j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8S6J # _exptl.entry_id 8S6J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8S6J _cell.length_a 109.17 _cell.length_b 109.17 _cell.length_c 208.925 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8S6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 109.17 109.17 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 109.17 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 109.17 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8S6J _atom_sites.fract_transf_matrix[1][1] 0.00916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 2 NA A 1 302 302 NA NA . D 2 NA A 1 303 303 NA NA . E 3 657 A 1 304 304 657 657 . F 4 2CV A 1 305 305 2CV 2CV . G 5 PG6 A 1 306 306 PG6 12P . H 6 CL A 1 307 1 CL CL . I 6 CL A 1 308 2 CL CL . J 7 HOH A 1 401 22 HOH HOH . J 7 HOH A 2 402 29 HOH HOH . J 7 HOH A 3 403 19 HOH HOH . J 7 HOH A 4 404 5 HOH HOH . J 7 HOH A 5 405 6 HOH HOH . J 7 HOH A 6 406 15 HOH HOH . J 7 HOH A 7 407 27 HOH HOH . J 7 HOH A 8 408 7 HOH HOH . J 7 HOH A 9 409 2 HOH HOH . J 7 HOH A 10 410 24 HOH HOH . J 7 HOH A 11 411 17 HOH HOH . J 7 HOH A 12 412 1 HOH HOH . J 7 HOH A 13 413 4 HOH HOH . J 7 HOH A 14 414 13 HOH HOH . J 7 HOH A 15 415 18 HOH HOH . J 7 HOH A 16 416 14 HOH HOH . J 7 HOH A 17 417 10 HOH HOH . J 7 HOH A 18 418 30 HOH HOH . J 7 HOH A 19 419 28 HOH HOH . J 7 HOH A 20 420 11 HOH HOH . J 7 HOH A 21 421 9 HOH HOH . J 7 HOH A 22 422 8 HOH HOH . J 7 HOH A 23 423 25 HOH HOH . J 7 HOH A 24 424 21 HOH HOH . J 7 HOH A 25 425 20 HOH HOH . J 7 HOH A 26 426 12 HOH HOH . J 7 HOH A 27 427 23 HOH HOH . J 7 HOH A 28 428 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 54.585 _atom_site.Cartn_y 54.585 _atom_site.Cartn_z 14.532 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 50.72 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #