data_8S7X # _model_server_result.job_id 78EJIV90rjc5fx8dDba36Q _model_server_result.datetime_utc '2025-09-06 05:53:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":401}' # _entry.id 8S7X # _exptl.entry_id 8S7X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 747.356 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FeFe cofactor' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 11-meric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 Q N N ? 13 R N N ? 13 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C LYS 260 C LYS 260 1_555 E N MHS 261 C MHS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 E C MHS 261 C MHS 261 1_555 E N ALA 262 C ALA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 E C ARG 274 C ARG 274 1_555 E N AGM 275 C AGM 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 E C AGM 275 C AGM 275 1_555 E N ALA 276 C ALA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 E C SER 402 C SER 402 1_555 E N MGN 403 C MGN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 E C MGN 403 C MGN 403 1_555 E N ARG 404 C ARG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 E C TYR 447 C TYR 447 1_555 E N GL3 448 C GL3 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 E C GL3 448 C GL3 448 1_555 E N TYR 449 C TYR 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 E C GLN 454 C GLN 454 1_555 E N SMC 455 C SMC 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale10 E C SMC 455 C SMC 455 1_555 E N GLY 456 C GLY 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 G C LYS 260 F LYS 260 1_555 G N MHS 261 F MHS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale12 G C MHS 261 F MHS 261 1_555 G N ALA 262 F ALA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 G C ARG 274 F ARG 274 1_555 G N AGM 275 F AGM 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale14 G C AGM 275 F AGM 275 1_555 G N ALA 276 F ALA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale15 G C SER 402 F SER 402 1_555 G N MGN 403 F MGN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 G C MGN 403 F MGN 403 1_555 G N ARG 404 F ARG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 G C TYR 447 F TYR 447 1_555 G N GL3 448 F GL3 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale18 G C GL3 448 F GL3 448 1_555 G N TYR 449 F TYR 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 G C GLN 454 F GLN 454 1_555 G N SMC 455 F SMC 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale20 G C SMC 455 F SMC 455 1_555 G N GLY 456 F GLY 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 L NI F43 . A F43 601 1_555 N S1 COM . C COM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc2 L NI F43 . A F43 601 1_555 G OE1 GLN 151 F GLN 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc3 H NE2 HIS 84 H HIS 84 1_555 Q FE8 S5Q . H S5Q 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 H SG CYS 143 H CYS 143 1_555 Q FE1 S5Q . H S5Q 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 I SG CYS 48 I CYS 12 1_555 R FE8 S5Q . I S5Q 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 I NE2 HIS 85 I HIS 49 1_555 S FE1 S5Q . I S5Q 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc7 I SG CYS 91 I CYS 55 1_555 R FE1 S5Q . I S5Q 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc8 I ND1 HIS 154 I HIS 118 1_555 S FE8 S5Q . I S5Q 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'C Fe8 S9 -4' _chem_comp.formula_weight 747.356 _chem_comp.id S5Q _chem_comp.mon_nstd_flag . _chem_comp.name 'FeFe cofactor' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S4B FE8 S5Q sing 492 n n S4B FE5 S5Q sing 493 n n S4B FE7 S5Q sing 494 n n FE8 S3B S5Q sing 495 n n FE8 S1B S5Q sing 496 n n FE5 S3A S5Q sing 497 n n FE5 S1B S5Q sing 498 n n FE5 CX S5Q sing 499 n n S3A FE4 S5Q sing 500 n n FE7 S5A S5Q sing 501 n n FE7 S3B S5Q sing 502 n n FE7 CX S5Q sing 503 n n S5A FE3 S5Q sing 504 n n S3B FE6 S5Q sing 505 n n FE6 S2B S5Q sing 506 n n FE6 S1B S5Q sing 507 n n FE6 CX S5Q sing 508 n n S2B FE2 S5Q sing 509 n n CX FE4 S5Q sing 510 n n CX FE3 S5Q sing 511 n n CX FE2 S5Q sing 512 n n FE4 S1A S5Q sing 513 n n FE4 S4A S5Q sing 514 n n S1A FE1 S5Q sing 515 n n S1A FE2 S5Q sing 516 n n S4A FE1 S5Q sing 517 n n S4A FE3 S5Q sing 518 n n FE1 S2A S5Q sing 519 n n FE3 S2A S5Q sing 520 n n S2A FE2 S5Q sing 521 n n # _atom_sites.entry_id 8S7X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 9 F43 A 1 601 601 F43 F43 . M 10 SHT E 1 601 601 SHT SHT . N 11 COM C 1 601 602 COM COM . O 9 F43 F 1 601 601 F43 F43 . P 12 TP7 F 1 602 501 TP7 TP7 . Q 13 S5Q H 1 401 401 S5Q S5Q . R 13 S5Q I 1 201 201 S5Q S5Q . S 13 S5Q I 1 202 402 S5Q S5Q . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S4B S5Q . . . Q 13 175.345 129.867 194.159 1 100.36 ? S4B S5Q 401 H 1 HETATM 2 FE FE8 S5Q . . . Q 13 177.611 129.712 194.385 1 109.79 ? FE8 S5Q 401 H 1 HETATM 3 FE FE5 S5Q . . . Q 13 176.18 128.713 192.409 1 111.35 ? FE5 S5Q 401 H 1 HETATM 4 S S3A S5Q . . . Q 13 174.941 128.509 190.533 1 93.11 ? S3A S5Q 401 H 1 HETATM 5 FE FE7 S5Q . . . Q 13 175.896 127.844 194.863 1 110.89 ? FE7 S5Q 401 H 1 HETATM 6 S S5A S5Q . . . Q 13 174.362 126.665 195.927 1 99.21 ? S5A S5Q 401 H 1 HETATM 7 S S3B S5Q . . . Q 13 177.977 127.899 195.7 1 106.37 ? S3B S5Q 401 H 1 HETATM 8 FE FE6 S5Q . . . Q 13 178.071 127.319 193.562 1 126.02 ? FE6 S5Q 401 H 1 HETATM 9 S S2B S5Q . . . Q 13 179.176 125.506 193.1 1 98.98 ? S2B S5Q 401 H 1 HETATM 10 S S1B S5Q . . . Q 13 178.391 129.132 192.299 1 95.44 ? S1B S5Q 401 H 1 HETATM 11 C CX S5Q . . . Q 13 176.163 126.865 193.171 1 107.15 ? CX S5Q 401 H 1 HETATM 12 FE FE4 S5Q . . . Q 13 175.089 126.513 191.522 1 106.32 ? FE4 S5Q 401 H 1 HETATM 13 S S1A S5Q . . . Q 13 176.312 124.855 190.535 1 114.13 ? S1A S5Q 401 H 1 HETATM 14 S S4A S5Q . . . Q 13 173.236 125.528 192.416 1 97.39 ? S4A S5Q 401 H 1 HETATM 15 FE FE1 S5Q . . . Q 13 174.8 123.923 191.997 1 119.91 ? FE1 S5Q 401 H 1 HETATM 16 FE FE3 S5Q . . . Q 13 174.83 125.651 193.997 1 105.29 ? FE3 S5Q 401 H 1 HETATM 17 S S2A S5Q . . . Q 13 175.943 123.687 193.937 1 107.74 ? S2A S5Q 401 H 1 HETATM 18 FE FE2 S5Q . . . Q 13 177.058 125.141 192.653 1 112.54 ? FE2 S5Q 401 H 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #