data_8S7X # _model_server_result.job_id Wg3T6JfyzGcP1M91QHF09g _model_server_result.datetime_utc '2025-09-09 06:09:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":601}' # _entry.id 8S7X # _exptl.entry_id 8S7X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 481.499 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description O-PHOSPHONO-N-{(2E)-7-[(2-SULFOETHYL)DITHIO]HEPT-2-ENOYL}-L-THREONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 11-meric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C LYS 260 C LYS 260 1_555 E N MHS 261 C MHS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 E C MHS 261 C MHS 261 1_555 E N ALA 262 C ALA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 E C ARG 274 C ARG 274 1_555 E N AGM 275 C AGM 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 E C AGM 275 C AGM 275 1_555 E N ALA 276 C ALA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 E C SER 402 C SER 402 1_555 E N MGN 403 C MGN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 E C MGN 403 C MGN 403 1_555 E N ARG 404 C ARG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 E C TYR 447 C TYR 447 1_555 E N GL3 448 C GL3 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 E C GL3 448 C GL3 448 1_555 E N TYR 449 C TYR 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 E C GLN 454 C GLN 454 1_555 E N SMC 455 C SMC 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale10 E C SMC 455 C SMC 455 1_555 E N GLY 456 C GLY 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 G C LYS 260 F LYS 260 1_555 G N MHS 261 F MHS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale12 G C MHS 261 F MHS 261 1_555 G N ALA 262 F ALA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 G C ARG 274 F ARG 274 1_555 G N AGM 275 F AGM 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale14 G C AGM 275 F AGM 275 1_555 G N ALA 276 F ALA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale15 G C SER 402 F SER 402 1_555 G N MGN 403 F MGN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 G C MGN 403 F MGN 403 1_555 G N ARG 404 F ARG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 G C TYR 447 F TYR 447 1_555 G N GL3 448 F GL3 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale18 G C GL3 448 F GL3 448 1_555 G N TYR 449 F TYR 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 G C GLN 454 F GLN 454 1_555 G N SMC 455 F SMC 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale20 G C SMC 455 F SMC 455 1_555 G N GLY 456 F GLY 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 L NI F43 . A F43 601 1_555 N S1 COM . C COM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc2 L NI F43 . A F43 601 1_555 G OE1 GLN 151 F GLN 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc3 H NE2 HIS 84 H HIS 84 1_555 Q FE8 S5Q . H S5Q 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 H SG CYS 143 H CYS 143 1_555 Q FE1 S5Q . H S5Q 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 I SG CYS 48 I CYS 12 1_555 R FE8 S5Q . I S5Q 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 I NE2 HIS 85 I HIS 49 1_555 S FE1 S5Q . I S5Q 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc7 I SG CYS 91 I CYS 55 1_555 R FE1 S5Q . I S5Q 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc8 I ND1 HIS 154 I HIS 118 1_555 S FE8 S5Q . I S5Q 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'C13 H24 N O10 P S3' _chem_comp.formula_weight 481.499 _chem_comp.id SHT _chem_comp.mon_nstd_flag . _chem_comp.name O-PHOSPHONO-N-{(2E)-7-[(2-SULFOETHYL)DITHIO]HEPT-2-ENOYL}-L-THREONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 CC SHT sing 535 n n S1 SK SHT sing 536 n n OS3 SG2 SHT doub 537 n n SG2 OS1 SHT doub 538 n n SG2 OS2 SHT sing 539 n n SG2 CD SHT sing 540 n n OS2 HO2S SHT sing 541 n n CD CC SHT sing 542 n n CD HCD1 SHT sing 543 n n CD HCD2 SHT sing 544 n n CC HCC1 SHT sing 545 n n CC HCC2 SHT sing 546 n n SK CK6 SHT sing 547 n n CK6 CK5 SHT sing 548 n n CK6 HK61 SHT sing 549 n n CK6 HK62 SHT sing 550 n n CK5 CK4 SHT sing 551 n n CK5 HK51 SHT sing 552 n n CK5 HK52 SHT sing 553 n n CK4 CK3 SHT sing 554 n n CK4 HK41 SHT sing 555 n n CK4 HK42 SHT sing 556 n n CK3 CK2 SHT sing 557 n n CK3 HK31 SHT sing 558 n n CK3 HK32 SHT sing 559 n n CK2 CK1 SHT doub 560 e n CK2 HC2K SHT sing 561 n n CK1 CK SHT sing 562 n n CK1 HC1K SHT sing 563 n n CK OK SHT doub 564 n n CK N SHT sing 565 n n N CA SHT sing 566 n n N HN SHT sing 567 n n CA C SHT sing 568 n n CA CB SHT sing 569 n n CA HCA SHT sing 570 n n C OXT SHT doub 571 n n C O SHT sing 572 n n O HO SHT sing 573 n n CB CG2 SHT sing 574 n n CB O3' SHT sing 575 n n CB HCB SHT sing 576 n n CG2 HG21 SHT sing 577 n n CG2 HG22 SHT sing 578 n n CG2 HG23 SHT sing 579 n n O3' P SHT sing 580 n n P O1P SHT doub 581 n n P O2P SHT sing 582 n n P O8P SHT sing 583 n n O2P HOP2 SHT sing 584 n n O8P HOP8 SHT sing 585 n n # _atom_sites.entry_id 8S7X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 9 F43 A 1 601 601 F43 F43 . M 10 SHT E 1 601 601 SHT SHT . N 11 COM C 1 601 602 COM COM . O 9 F43 F 1 601 601 F43 F43 . P 12 TP7 F 1 602 501 TP7 TP7 . Q 13 S5Q H 1 401 401 S5Q S5Q . R 13 S5Q I 1 201 201 S5Q S5Q . S 13 S5Q I 1 202 402 S5Q S5Q . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 SHT . . . M 10 172.767 177.337 184.629 1 91.92 ? S1 SHT 601 E 1 HETATM 2 O OS3 SHT . . . M 10 173.858 181.813 186.715 1 86.15 ? OS3 SHT 601 E 1 HETATM 3 S SG2 SHT . . . M 10 173.057 181.634 185.539 1 111.87 ? SG2 SHT 601 E 1 HETATM 4 O OS1 SHT . . . M 10 173.706 181.827 184.274 1 100.63 ? OS1 SHT 601 E 1 HETATM 5 O OS2 SHT . . . M 10 171.836 182.568 185.562 1 89.53 ? OS2 SHT 601 E 1 HETATM 6 C CD SHT . . . M 10 172.512 179.951 185.559 1 79.24 ? CD SHT 601 E 1 HETATM 7 C CC SHT . . . M 10 173.281 179.076 184.588 1 75.61 ? CC SHT 601 E 1 HETATM 8 S SK SHT . . . M 10 171.437 177.209 183.112 1 95.67 ? SK SHT 601 E 1 HETATM 9 C CK6 SHT . . . M 10 171.844 178.642 182.074 1 72.94 ? CK6 SHT 601 E 1 HETATM 10 C CK5 SHT . . . M 10 171.496 178.466 180.604 1 79.28 ? CK5 SHT 601 E 1 HETATM 11 C CK4 SHT . . . M 10 172.724 178.426 179.713 1 84.89 ? CK4 SHT 601 E 1 HETATM 12 C CK3 SHT . . . M 10 173.265 179.783 179.399 1 88.95 ? CK3 SHT 601 E 1 HETATM 13 C CK2 SHT . . . M 10 173.136 180.153 177.953 1 92.93 ? CK2 SHT 601 E 1 HETATM 14 C CK1 SHT . . . M 10 172.426 181.167 177.474 1 95.48 ? CK1 SHT 601 E 1 HETATM 15 C CK SHT . . . M 10 171.869 181.16 176.23 1 101.15 ? CK SHT 601 E 1 HETATM 16 O OK SHT . . . M 10 170.951 181.914 175.919 1 98.83 ? OK SHT 601 E 1 HETATM 17 N N SHT . . . M 10 172.4 180.269 175.363 1 100.56 ? N SHT 601 E 1 HETATM 18 C CA SHT . . . M 10 171.98 180.184 173.971 1 97.04 ? CA SHT 601 E 1 HETATM 19 C C SHT . . . M 10 171.497 178.76 173.638 1 97.81 ? C SHT 601 E 1 HETATM 20 O OXT SHT . . . M 10 170.612 178.642 172.768 1 94.7 ? OXT SHT 601 E 1 HETATM 21 O O SHT . . . M 10 171.986 177.821 174.297 1 96.44 ? O SHT 601 E 1 HETATM 22 C CB SHT . . . M 10 173.133 180.629 173.052 1 95.24 ? CB SHT 601 E 1 HETATM 23 C CG2 SHT . . . M 10 173.327 179.75 171.839 1 83.52 ? CG2 SHT 601 E 1 HETATM 24 O O3' SHT . . . M 10 172.834 181.979 172.566 1 99.88 ? O3' SHT 601 E 1 HETATM 25 P P SHT . . . M 10 173.385 183.278 173.34 1 112.39 ? P SHT 601 E 1 HETATM 26 O O1P SHT . . . M 10 174.15 184.08 172.306 1 89.12 ? O1P SHT 601 E 1 HETATM 27 O O2P SHT . . . M 10 172.155 183.993 173.849 1 92.06 ? O2P SHT 601 E 1 HETATM 28 O O8P SHT . . . M 10 174.268 182.758 174.459 1 86.89 ? O8P SHT 601 E 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #