data_8S87 # _model_server_result.job_id zbZwm9sB-O8IV2GNtaSTjQ _model_server_result.datetime_utc '2024-11-20 05:41:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":809}' # _entry.id 8S87 # _exptl.entry_id 8S87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8S87 _cell.length_a 74.424 _cell.length_b 110.629 _cell.length_c 111.363 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8S87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 428 A CYS 428 1_555 A SG CYS 442 A CYS 442 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 506 A CYS 506 1_555 A SG CYS 509 A CYS 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc1 A OG1 THR 9 A THR 9 1_555 H NA NA . A NA 807 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc2 A OD1 ASP 202 A ASP 202 1_555 M MG MG . A MG 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc3 A O GLY 211 A GLY 211 1_555 L MG MG . A MG 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc4 A OD2 ASP 215 A ASP 215 1_555 D MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc5 A OD2 ASP 235 A ASP 235 1_555 B MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc6 A O ASP 259 A ASP 259 1_555 C MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc7 A O GLN 332 A GLN 332 1_555 Q MG MG . A MG 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc8 A OE1 GLN 332 A GLN 332 1_555 Q MG MG . A MG 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc9 A O ILE 337 A ILE 337 1_555 O MG MG . A MG 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc10 A OG SER 345 A SER 345 1_555 C MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc11 A O TRP 355 A TRP 355 1_555 O MG MG . A MG 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc12 A OE2 GLU 363 A GLU 363 1_555 J NA NA . A NA 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc13 A OD1 ASP 404 A ASP 404 1_555 E MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc14 A OE2 GLU 580 A GLU 580 1_555 E MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc15 A OG1 THR 622 A THR 622 1_555 P MG MG . A MG 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc16 D MG MG . A MG 803 1_555 S O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc17 J NA NA . A NA 809 1_555 S O HOH . A HOH 946 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc18 J NA NA . A NA 809 1_555 S O HOH . A HOH 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc19 L MG MG . A MG 811 1_555 S O HOH . A HOH 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8S87 _atom_sites.fract_transf_matrix[1][1] 0.013437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 801 1 MG MG . C 2 MG A 1 802 2 MG MG . D 2 MG A 1 803 3 MG MG . E 2 MG A 1 804 4 MG MG . F 3 SO4 A 1 805 5 SO4 SO4 . G 3 SO4 A 1 806 6 SO4 SO4 . H 4 NA A 1 807 7 NA NA . I 5 GOL A 1 808 8 GOL GOL . J 4 NA A 1 809 9 NA NA . K 3 SO4 A 1 810 10 SO4 SO4 . L 2 MG A 1 811 11 MG MG . M 2 MG A 1 812 12 MG MG . N 3 SO4 A 1 813 13 SO4 SO4 . O 2 MG A 1 814 14 MG MG . P 2 MG A 1 815 15 MG MG . Q 2 MG A 1 816 16 MG MG . R 3 SO4 A 1 817 17 SO4 SO4 . S 6 HOH A 1 901 1 HOH HOH . S 6 HOH A 2 902 91 HOH HOH . S 6 HOH A 3 903 79 HOH HOH . S 6 HOH A 4 904 154 HOH HOH . S 6 HOH A 5 905 71 HOH HOH . S 6 HOH A 6 906 56 HOH HOH . S 6 HOH A 7 907 144 HOH HOH . S 6 HOH A 8 908 109 HOH HOH . S 6 HOH A 9 909 107 HOH HOH . S 6 HOH A 10 910 153 HOH HOH . S 6 HOH A 11 911 26 HOH HOH . S 6 HOH A 12 912 3 HOH HOH . S 6 HOH A 13 913 137 HOH HOH . S 6 HOH A 14 914 46 HOH HOH . S 6 HOH A 15 915 121 HOH HOH . S 6 HOH A 16 916 7 HOH HOH . S 6 HOH A 17 917 146 HOH HOH . S 6 HOH A 18 918 85 HOH HOH . S 6 HOH A 19 919 74 HOH HOH . S 6 HOH A 20 920 93 HOH HOH . S 6 HOH A 21 921 69 HOH HOH . S 6 HOH A 22 922 150 HOH HOH . S 6 HOH A 23 923 32 HOH HOH . S 6 HOH A 24 924 100 HOH HOH . S 6 HOH A 25 925 10 HOH HOH . S 6 HOH A 26 926 42 HOH HOH . S 6 HOH A 27 927 11 HOH HOH . S 6 HOH A 28 928 67 HOH HOH . S 6 HOH A 29 929 16 HOH HOH . S 6 HOH A 30 930 25 HOH HOH . S 6 HOH A 31 931 86 HOH HOH . S 6 HOH A 32 932 13 HOH HOH . S 6 HOH A 33 933 106 HOH HOH . S 6 HOH A 34 934 80 HOH HOH . S 6 HOH A 35 935 55 HOH HOH . S 6 HOH A 36 936 28 HOH HOH . S 6 HOH A 37 937 126 HOH HOH . S 6 HOH A 38 938 99 HOH HOH . S 6 HOH A 39 939 2 HOH HOH . S 6 HOH A 40 940 147 HOH HOH . S 6 HOH A 41 941 54 HOH HOH . S 6 HOH A 42 942 19 HOH HOH . S 6 HOH A 43 943 47 HOH HOH . S 6 HOH A 44 944 102 HOH HOH . S 6 HOH A 45 945 12 HOH HOH . S 6 HOH A 46 946 37 HOH HOH . S 6 HOH A 47 947 5 HOH HOH . S 6 HOH A 48 948 4 HOH HOH . S 6 HOH A 49 949 34 HOH HOH . S 6 HOH A 50 950 24 HOH HOH . S 6 HOH A 51 951 101 HOH HOH . S 6 HOH A 52 952 145 HOH HOH . S 6 HOH A 53 953 95 HOH HOH . S 6 HOH A 54 954 53 HOH HOH . S 6 HOH A 55 955 113 HOH HOH . S 6 HOH A 56 956 48 HOH HOH . S 6 HOH A 57 957 142 HOH HOH . S 6 HOH A 58 958 39 HOH HOH . S 6 HOH A 59 959 78 HOH HOH . S 6 HOH A 60 960 60 HOH HOH . S 6 HOH A 61 961 6 HOH HOH . S 6 HOH A 62 962 18 HOH HOH . S 6 HOH A 63 963 83 HOH HOH . S 6 HOH A 64 964 30 HOH HOH . S 6 HOH A 65 965 40 HOH HOH . S 6 HOH A 66 966 87 HOH HOH . S 6 HOH A 67 967 92 HOH HOH . S 6 HOH A 68 968 22 HOH HOH . S 6 HOH A 69 969 43 HOH HOH . S 6 HOH A 70 970 105 HOH HOH . S 6 HOH A 71 971 20 HOH HOH . S 6 HOH A 72 972 35 HOH HOH . S 6 HOH A 73 973 75 HOH HOH . S 6 HOH A 74 974 63 HOH HOH . S 6 HOH A 75 975 125 HOH HOH . S 6 HOH A 76 976 27 HOH HOH . S 6 HOH A 77 977 49 HOH HOH . S 6 HOH A 78 978 110 HOH HOH . S 6 HOH A 79 979 103 HOH HOH . S 6 HOH A 80 980 64 HOH HOH . S 6 HOH A 81 981 50 HOH HOH . S 6 HOH A 82 982 151 HOH HOH . S 6 HOH A 83 983 136 HOH HOH . S 6 HOH A 84 984 38 HOH HOH . S 6 HOH A 85 985 123 HOH HOH . S 6 HOH A 86 986 81 HOH HOH . S 6 HOH A 87 987 62 HOH HOH . S 6 HOH A 88 988 97 HOH HOH . S 6 HOH A 89 989 8 HOH HOH . S 6 HOH A 90 990 41 HOH HOH . S 6 HOH A 91 991 108 HOH HOH . S 6 HOH A 92 992 135 HOH HOH . S 6 HOH A 93 993 89 HOH HOH . S 6 HOH A 94 994 68 HOH HOH . S 6 HOH A 95 995 120 HOH HOH . S 6 HOH A 96 996 23 HOH HOH . S 6 HOH A 97 997 15 HOH HOH . S 6 HOH A 98 998 17 HOH HOH . S 6 HOH A 99 999 115 HOH HOH . S 6 HOH A 100 1000 45 HOH HOH . S 6 HOH A 101 1001 21 HOH HOH . S 6 HOH A 102 1002 52 HOH HOH . S 6 HOH A 103 1003 111 HOH HOH . S 6 HOH A 104 1004 70 HOH HOH . S 6 HOH A 105 1005 58 HOH HOH . S 6 HOH A 106 1006 66 HOH HOH . S 6 HOH A 107 1007 65 HOH HOH . S 6 HOH A 108 1008 29 HOH HOH . S 6 HOH A 109 1009 33 HOH HOH . S 6 HOH A 110 1010 36 HOH HOH . S 6 HOH A 111 1011 104 HOH HOH . S 6 HOH A 112 1012 82 HOH HOH . S 6 HOH A 113 1013 152 HOH HOH . S 6 HOH A 114 1014 114 HOH HOH . S 6 HOH A 115 1015 44 HOH HOH . S 6 HOH A 116 1016 73 HOH HOH . S 6 HOH A 117 1017 122 HOH HOH . S 6 HOH A 118 1018 148 HOH HOH . S 6 HOH A 119 1019 117 HOH HOH . S 6 HOH A 120 1020 139 HOH HOH . S 6 HOH A 121 1021 84 HOH HOH . S 6 HOH A 122 1022 61 HOH HOH . S 6 HOH A 123 1023 51 HOH HOH . S 6 HOH A 124 1024 119 HOH HOH . S 6 HOH A 125 1025 124 HOH HOH . S 6 HOH A 126 1026 72 HOH HOH . S 6 HOH A 127 1027 133 HOH HOH . S 6 HOH A 128 1028 90 HOH HOH . S 6 HOH A 129 1029 14 HOH HOH . S 6 HOH A 130 1030 118 HOH HOH . S 6 HOH A 131 1031 98 HOH HOH . S 6 HOH A 132 1032 128 HOH HOH . S 6 HOH A 133 1033 9 HOH HOH . S 6 HOH A 134 1034 140 HOH HOH . S 6 HOH A 135 1035 96 HOH HOH . S 6 HOH A 136 1036 130 HOH HOH . S 6 HOH A 137 1037 134 HOH HOH . S 6 HOH A 138 1038 132 HOH HOH . S 6 HOH A 139 1039 88 HOH HOH . S 6 HOH A 140 1040 76 HOH HOH . S 6 HOH A 141 1041 116 HOH HOH . S 6 HOH A 142 1042 143 HOH HOH . S 6 HOH A 143 1043 94 HOH HOH . S 6 HOH A 144 1044 112 HOH HOH . S 6 HOH A 145 1045 129 HOH HOH . S 6 HOH A 146 1046 127 HOH HOH . S 6 HOH A 147 1047 57 HOH HOH . S 6 HOH A 148 1048 149 HOH HOH . S 6 HOH A 149 1049 59 HOH HOH . S 6 HOH A 150 1050 77 HOH HOH . S 6 HOH A 151 1051 131 HOH HOH . S 6 HOH A 152 1052 31 HOH HOH . S 6 HOH A 153 1053 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x -7.876 _atom_site.Cartn_y 2.327 _atom_site.Cartn_z -0.386 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 809 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #