data_8S8W # _model_server_result.job_id 5DolNoB1p8T9tDw-TfNk9w _model_server_result.datetime_utc '2024-11-21 23:59:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":7205}' # _entry.id 8S8W # _exptl.entry_id 8S8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8S8W _cell.length_a 167.14 _cell.length_b 167.14 _cell.length_c 51.83 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8S8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C P U 1 C U 2 1_555 L O3B GTA . C GTA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.66 ? metalc ? metalc1 B SG CYS 75 B CYS 4327 1_555 J ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 B SG CYS 78 B CYS 4330 1_555 J ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc3 B NE2 HIS 84 B HIS 4336 1_555 J ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 B SG CYS 91 B CYS 4343 1_555 J ZN ZN . B ZN 4401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc5 B SG CYS 118 B CYS 4370 1_555 K ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 B SG CYS 121 B CYS 4373 1_555 K ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc7 B SG CYS 129 B CYS 4381 1_555 K ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc8 B SG CYS 131 B CYS 4383 1_555 K ZN ZN . B ZN 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 122 n n C1 C2 EDO sing 123 n n C1 H11 EDO sing 124 n n C1 H12 EDO sing 125 n n O1 HO1 EDO sing 126 n n C2 O2 EDO sing 127 n n C2 H21 EDO sing 128 n n C2 H22 EDO sing 129 n n O2 HO2 EDO sing 130 n n # _atom_sites.entry_id 8S8W _atom_sites.fract_transf_matrix[1][1] 0.005983 _atom_sites.fract_transf_matrix[1][2] 0.003454 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006909 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MES A 1 7201 7906 MES MES . E 5 SAM A 1 7202 7911 SAM SAM . F 6 SGV A 1 7203 7917 SGV SGV . G 7 EDO A 1 7204 7918 EDO EDO . H 7 EDO A 1 7205 7919 EDO EDO . I 7 EDO A 1 7206 7920 EDO EDO . J 8 ZN B 1 4401 8654 ZN ZN . K 8 ZN B 1 4402 8655 ZN ZN . L 9 GTA C 1 101 7916 GTA CA0 . M 10 HOH A 1 7301 267 HOH HOH . M 10 HOH A 2 7302 166 HOH HOH . M 10 HOH A 3 7303 38 HOH HOH . M 10 HOH A 4 7304 14 HOH HOH . M 10 HOH A 5 7305 168 HOH HOH . M 10 HOH A 6 7306 183 HOH HOH . M 10 HOH A 7 7307 132 HOH HOH . M 10 HOH A 8 7308 10 HOH HOH . M 10 HOH A 9 7309 6 HOH HOH . M 10 HOH A 10 7310 7 HOH HOH . M 10 HOH A 11 7311 17 HOH HOH . M 10 HOH A 12 7312 43 HOH HOH . M 10 HOH A 13 7313 20 HOH HOH . M 10 HOH A 14 7314 28 HOH HOH . M 10 HOH A 15 7315 167 HOH HOH . M 10 HOH A 16 7316 94 HOH HOH . M 10 HOH A 17 7317 88 HOH HOH . M 10 HOH A 18 7318 81 HOH HOH . M 10 HOH A 19 7319 45 HOH HOH . M 10 HOH A 20 7320 256 HOH HOH . M 10 HOH A 21 7321 134 HOH HOH . M 10 HOH A 22 7322 138 HOH HOH . M 10 HOH A 23 7323 93 HOH HOH . M 10 HOH A 24 7324 46 HOH HOH . M 10 HOH A 25 7325 198 HOH HOH . M 10 HOH A 26 7326 237 HOH HOH . M 10 HOH A 27 7327 15 HOH HOH . M 10 HOH A 28 7328 5 HOH HOH . M 10 HOH A 29 7329 57 HOH HOH . M 10 HOH A 30 7330 35 HOH HOH . M 10 HOH A 31 7331 271 HOH HOH . M 10 HOH A 32 7332 224 HOH HOH . M 10 HOH A 33 7333 32 HOH HOH . M 10 HOH A 34 7334 9 HOH HOH . M 10 HOH A 35 7335 47 HOH HOH . M 10 HOH A 36 7336 54 HOH HOH . M 10 HOH A 37 7337 4 HOH HOH . M 10 HOH A 38 7338 11 HOH HOH . M 10 HOH A 39 7339 86 HOH HOH . M 10 HOH A 40 7340 228 HOH HOH . M 10 HOH A 41 7341 26 HOH HOH . M 10 HOH A 42 7342 261 HOH HOH . M 10 HOH A 43 7343 97 HOH HOH . M 10 HOH A 44 7344 266 HOH HOH . M 10 HOH A 45 7345 27 HOH HOH . M 10 HOH A 46 7346 37 HOH HOH . M 10 HOH A 47 7347 3 HOH HOH . M 10 HOH A 48 7348 24 HOH HOH . M 10 HOH A 49 7349 172 HOH HOH . M 10 HOH A 50 7350 90 HOH HOH . M 10 HOH A 51 7351 251 HOH HOH . M 10 HOH A 52 7352 21 HOH HOH . M 10 HOH A 53 7353 87 HOH HOH . M 10 HOH A 54 7354 169 HOH HOH . M 10 HOH A 55 7355 61 HOH HOH . M 10 HOH A 56 7356 113 HOH HOH . M 10 HOH A 57 7357 153 HOH HOH . M 10 HOH A 58 7358 104 HOH HOH . M 10 HOH A 59 7359 164 HOH HOH . M 10 HOH A 60 7360 265 HOH HOH . M 10 HOH A 61 7361 13 HOH HOH . M 10 HOH A 62 7362 125 HOH HOH . M 10 HOH A 63 7363 68 HOH HOH . M 10 HOH A 64 7364 107 HOH HOH . M 10 HOH A 65 7365 51 HOH HOH . M 10 HOH A 66 7366 56 HOH HOH . M 10 HOH A 67 7367 58 HOH HOH . M 10 HOH A 68 7368 44 HOH HOH . M 10 HOH A 69 7369 229 HOH HOH . M 10 HOH A 70 7370 235 HOH HOH . M 10 HOH A 71 7371 152 HOH HOH . M 10 HOH A 72 7372 199 HOH HOH . M 10 HOH A 73 7373 142 HOH HOH . M 10 HOH A 74 7374 50 HOH HOH . M 10 HOH A 75 7375 55 HOH HOH . M 10 HOH A 76 7376 109 HOH HOH . M 10 HOH A 77 7377 253 HOH HOH . M 10 HOH A 78 7378 126 HOH HOH . M 10 HOH A 79 7379 242 HOH HOH . M 10 HOH A 80 7380 208 HOH HOH . M 10 HOH A 81 7381 248 HOH HOH . M 10 HOH A 82 7382 144 HOH HOH . M 10 HOH A 83 7383 112 HOH HOH . M 10 HOH A 84 7384 135 HOH HOH . M 10 HOH A 85 7385 36 HOH HOH . M 10 HOH A 86 7386 146 HOH HOH . M 10 HOH A 87 7387 60 HOH HOH . M 10 HOH A 88 7388 148 HOH HOH . M 10 HOH A 89 7389 191 HOH HOH . M 10 HOH A 90 7390 187 HOH HOH . M 10 HOH A 91 7391 192 HOH HOH . M 10 HOH A 92 7392 259 HOH HOH . M 10 HOH A 93 7393 143 HOH HOH . M 10 HOH A 94 7394 257 HOH HOH . M 10 HOH A 95 7395 150 HOH HOH . M 10 HOH A 96 7396 210 HOH HOH . M 10 HOH A 97 7397 129 HOH HOH . M 10 HOH A 98 7398 243 HOH HOH . M 10 HOH A 99 7399 252 HOH HOH . M 10 HOH A 100 7400 270 HOH HOH . M 10 HOH A 101 7401 111 HOH HOH . M 10 HOH A 102 7402 188 HOH HOH . M 10 HOH A 103 7403 241 HOH HOH . M 10 HOH A 104 7404 155 HOH HOH . M 10 HOH A 105 7405 244 HOH HOH . M 10 HOH A 106 7406 151 HOH HOH . M 10 HOH A 107 7407 193 HOH HOH . M 10 HOH A 108 7408 268 HOH HOH . M 10 HOH A 109 7409 154 HOH HOH . M 10 HOH A 110 7410 254 HOH HOH . M 10 HOH A 111 7411 105 HOH HOH . M 10 HOH A 112 7412 269 HOH HOH . M 10 HOH A 113 7413 127 HOH HOH . M 10 HOH A 114 7414 221 HOH HOH . M 10 HOH A 115 7415 136 HOH HOH . M 10 HOH A 116 7416 165 HOH HOH . M 10 HOH A 117 7417 186 HOH HOH . M 10 HOH A 118 7418 161 HOH HOH . M 10 HOH A 119 7419 131 HOH HOH . M 10 HOH A 120 7420 159 HOH HOH . M 10 HOH A 121 7421 249 HOH HOH . M 10 HOH A 122 7422 238 HOH HOH . M 10 HOH A 123 7423 263 HOH HOH . M 10 HOH A 124 7424 273 HOH HOH . M 10 HOH A 125 7425 236 HOH HOH . M 10 HOH A 126 7426 160 HOH HOH . M 10 HOH A 127 7427 122 HOH HOH . M 10 HOH A 128 7428 239 HOH HOH . M 10 HOH A 129 7429 250 HOH HOH . M 10 HOH A 130 7430 173 HOH HOH . M 10 HOH A 131 7431 110 HOH HOH . M 10 HOH A 132 7432 141 HOH HOH . M 10 HOH A 133 7433 69 HOH HOH . M 10 HOH A 134 7434 245 HOH HOH . M 10 HOH A 135 7435 195 HOH HOH . M 10 HOH A 136 7436 124 HOH HOH . M 10 HOH A 137 7437 130 HOH HOH . M 10 HOH A 138 7438 182 HOH HOH . M 10 HOH A 139 7439 137 HOH HOH . M 10 HOH A 140 7440 246 HOH HOH . N 10 HOH B 1 4501 16 HOH HOH . N 10 HOH B 2 4502 189 HOH HOH . N 10 HOH B 3 4503 255 HOH HOH . N 10 HOH B 4 4504 260 HOH HOH . N 10 HOH B 5 4505 33 HOH HOH . N 10 HOH B 6 4506 22 HOH HOH . N 10 HOH B 7 4507 92 HOH HOH . N 10 HOH B 8 4508 8 HOH HOH . N 10 HOH B 9 4509 53 HOH HOH . N 10 HOH B 10 4510 42 HOH HOH . N 10 HOH B 11 4511 226 HOH HOH . N 10 HOH B 12 4512 25 HOH HOH . N 10 HOH B 13 4513 174 HOH HOH . N 10 HOH B 14 4514 89 HOH HOH . N 10 HOH B 15 4515 201 HOH HOH . N 10 HOH B 16 4516 29 HOH HOH . N 10 HOH B 17 4517 41 HOH HOH . N 10 HOH B 18 4518 274 HOH HOH . N 10 HOH B 19 4519 18 HOH HOH . N 10 HOH B 20 4520 79 HOH HOH . N 10 HOH B 21 4521 101 HOH HOH . N 10 HOH B 22 4522 48 HOH HOH . N 10 HOH B 23 4523 102 HOH HOH . N 10 HOH B 24 4524 123 HOH HOH . N 10 HOH B 25 4525 214 HOH HOH . N 10 HOH B 26 4526 179 HOH HOH . N 10 HOH B 27 4527 177 HOH HOH . N 10 HOH B 28 4528 95 HOH HOH . N 10 HOH B 29 4529 12 HOH HOH . N 10 HOH B 30 4530 247 HOH HOH . N 10 HOH B 31 4531 96 HOH HOH . N 10 HOH B 32 4532 234 HOH HOH . N 10 HOH B 33 4533 190 HOH HOH . N 10 HOH B 34 4534 194 HOH HOH . N 10 HOH B 35 4535 204 HOH HOH . N 10 HOH B 36 4536 178 HOH HOH . O 10 HOH C 1 201 118 HOH HOH . O 10 HOH C 2 202 121 HOH HOH . O 10 HOH C 3 203 240 HOH HOH . O 10 HOH C 4 204 80 HOH HOH . O 10 HOH C 5 205 140 HOH HOH . O 10 HOH C 6 206 117 HOH HOH . O 10 HOH C 7 207 262 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 7 67.382 -10.165 7.952 1 77.3 ? C1 EDO 7205 A 1 HETATM 2 O O1 EDO . . . H 7 68.128 -10.941 7.041 1 62.66 ? O1 EDO 7205 A 1 HETATM 3 C C2 EDO . . . H 7 66.827 -11.118 8.987 1 74.77 ? C2 EDO 7205 A 1 HETATM 4 O O2 EDO . . . H 7 67.713 -12.219 9.029 1 57.5 ? O2 EDO 7205 A 1 HETATM 5 H H11 EDO . . . H 7 66.653 -9.696 7.518 1 92.84 ? H11 EDO 7205 A 1 HETATM 6 H H12 EDO . . . H 7 67.927 -9.492 8.388 1 92.84 ? H12 EDO 7205 A 1 HETATM 7 H HO1 EDO . . . H 7 67.737 -11.69 6.948 1 75.29 ? HO1 EDO 7205 A 1 HETATM 8 H H21 EDO . . . H 7 65.925 -11.366 8.732 1 89.82 ? H21 EDO 7205 A 1 HETATM 9 H H22 EDO . . . H 7 66.759 -10.653 9.836 1 89.82 ? H22 EDO 7205 A 1 HETATM 10 H HO2 EDO . . . H 7 68.488 -11.927 9.22 1 69.09 ? HO2 EDO 7205 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #