data_8S90 # _model_server_result.job_id yZ5hi5D-dl07WkdGKJ7g6w _model_server_result.datetime_utc '2025-02-05 07:53:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s90 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 8S90 # _exptl.entry_id 8S90 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 559.525 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8S90 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8S90 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 B CYS 42 1_555 A SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 44 B CYS 44 1_555 A SG CYS 161 B CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 42 A CYS 42 1_555 B SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 B SG CYS 44 A CYS 44 1_555 B SG CYS 161 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 C SG CYS 42 C CYS 42 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 C SG CYS 44 C CYS 44 1_555 C SG CYS 161 C CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 D SG CYS 42 D CYS 42 1_555 D SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 D SG CYS 44 D CYS 44 1_555 D SG CYS 161 D CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf9 E SG CYS 42 E CYS 42 1_555 E SG CYS 127 E CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 E SG CYS 44 E CYS 44 1_555 E SG CYS 161 E CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf11 F SG CYS 42 F CYS 42 1_555 F SG CYS 127 F CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf12 F SG CYS 44 F CYS 44 1_555 F SG CYS 161 F CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf13 G SG CYS 42 G CYS 42 1_555 G SG CYS 127 G CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf14 G SG CYS 44 G CYS 44 1_555 G SG CYS 161 G CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf15 H SG CYS 42 H CYS 42 1_555 H SG CYS 127 H CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf16 H SG CYS 44 H CYS 44 1_555 H SG CYS 161 H CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'H28 N14 O2 Ru3' _chem_comp.formula_weight 559.525 _chem_comp.id R2R _chem_comp.mon_nstd_flag . _chem_comp.name 'ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N08 RU3 R2R sing 275 n n N11 RU3 R2R sing 276 n n N10 RU3 R2R sing 277 n n RU3 N09 R2R sing 278 n n RU3 N12 R2R sing 279 n n RU3 O06 R2R sing 280 n n O06 RU2 R2R sing 281 n n N01 RU2 R2R sing 282 n n N05 RU2 R2R sing 283 n n RU2 N04 R2R sing 284 n n RU2 N03 R2R sing 285 n n RU2 O13 R2R sing 286 n n O13 RU1 R2R sing 287 n n N18 RU1 R2R sing 288 n n N16 RU1 R2R sing 289 n n RU1 N17 R2R sing 290 n n RU1 N19 R2R sing 291 n n RU1 N15 R2R sing 292 n n N01 H1 R2R sing 293 n n N01 H2 R2R sing 294 n n N03 H3 R2R sing 295 n n N03 H4 R2R sing 296 n n N04 H5 R2R sing 297 n n N04 H6 R2R sing 298 n n N05 H7 R2R sing 299 n n N05 H8 R2R sing 300 n n N08 H9 R2R sing 301 n n N08 H10 R2R sing 302 n n N09 H11 R2R sing 303 n n N09 H12 R2R sing 304 n n N10 H13 R2R sing 305 n n N10 H14 R2R sing 306 n n N11 H15 R2R sing 307 n n N11 H16 R2R sing 308 n n N12 H17 R2R sing 309 n n N12 H18 R2R sing 310 n n N15 H19 R2R sing 311 n n N15 H20 R2R sing 312 n n N16 H21 R2R sing 313 n n N16 H22 R2R sing 314 n n N17 H23 R2R sing 315 n n N17 H24 R2R sing 316 n n N18 H25 R2R sing 317 n n N18 H26 R2R sing 318 n n N19 H27 R2R sing 319 n n N19 H28 R2R sing 320 n n # _atom_sites.entry_id 8S90 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id I _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id R2R _pdbx_nonpoly_scheme.pdb_strand_id E _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id R2R _pdbx_nonpoly_scheme.auth_mon_id R2R _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 R2R . . . I 2 138.413 136.005 140.003 1 267 ? N01 R2R 401 E 1 HETATM 2 N N03 R2R . . . I 2 135.21 136.949 138.81 1 251.21 ? N03 R2R 401 E 1 HETATM 3 N N04 R2R . . . I 2 136.186 134.897 139.671 1 264.79 ? N04 R2R 401 E 1 HETATM 4 N N05 R2R . . . I 2 137.547 138.143 139.382 1 244.89 ? N05 R2R 401 E 1 HETATM 5 O O06 R2R . . . I 2 137.383 136.133 137.88 1 281.74 ? O06 R2R 401 E 1 HETATM 6 N N08 R2R . . . I 2 138.293 136.027 135.708 1 267.59 ? N08 R2R 401 E 1 HETATM 7 N N09 R2R . . . I 2 137.341 138.286 135.058 1 229.43 ? N09 R2R 401 E 1 HETATM 8 N N10 R2R . . . I 2 138.8 138.072 137.106 1 262.27 ? N10 R2R 401 E 1 HETATM 9 N N11 R2R . . . I 2 135.815 136.461 135.985 1 246.7 ? N11 R2R 401 E 1 HETATM 10 N N12 R2R . . . I 2 136.31 138.609 137.172 1 270.41 ? N12 R2R 401 E 1 HETATM 11 O O13 R2R . . . I 2 136.023 137.016 140.944 1 250.64 ? O13 R2R 401 E 1 HETATM 12 N N15 R2R . . . I 2 135.345 136.397 143.189 1 255.49 ? N15 R2R 401 E 1 HETATM 13 N N16 R2R . . . I 2 138.32 137.818 141.838 1 272.1 ? N16 R2R 401 E 1 HETATM 14 N N17 R2R . . . I 2 137.581 137.149 144.092 1 248.05 ? N17 R2R 401 E 1 HETATM 15 N N18 R2R . . . I 2 136.198 138.724 142.688 1 274.35 ? N18 R2R 401 E 1 HETATM 16 N N19 R2R . . . I 2 137.395 135.397 142.297 1 278.98 ? N19 R2R 401 E 1 HETATM 17 RU RU2 R2R . . . I 2 136.807 136.543 139.466 1 362.87 ? RU2 R2R 401 E 1 HETATM 18 RU RU3 R2R . . . I 2 137.309 137.269 136.529 1 311.87 ? RU3 R2R 401 E 1 HETATM 19 RU RU1 R2R . . . I 2 136.83 137.075 142.473 1 307.5 ? RU1 R2R 401 E 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #