data_8S93 # _model_server_result.job_id NGJl3OP1ZollW-LWMkwc9A _model_server_result.datetime_utc '2024-10-10 15:23:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 8S93 # _exptl.entry_id 8S93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.98 _cell.angle_gamma 90 _cell.entry_id 8S93 _cell.length_a 38.376 _cell.length_b 77.383 _cell.length_c 82.323 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8S93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 154 A CYS 154 1_555 A SG CYS 165 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc1 A ND1 HIS 143 A HIS 143 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc2 A SG CYS 154 A CYS 154 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 A SG CYS 155 A CYS 155 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc4 A SG CYS 165 A CYS 165 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 229 n n C1 C2 GOL sing 230 n n C1 H11 GOL sing 231 n n C1 H12 GOL sing 232 n n O1 HO1 GOL sing 233 n n C2 O2 GOL sing 234 n n C2 C3 GOL sing 235 n n C2 H2 GOL sing 236 n n O2 HO2 GOL sing 237 n n C3 O3 GOL sing 238 n n C3 H31 GOL sing 239 n n C3 H32 GOL sing 240 n n O3 HO3 GOL sing 241 n n # _atom_sites.entry_id 8S93 _atom_sites.fract_transf_matrix[1][1] 0.026058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003653 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9AJ A 1 701 701 9AJ 9AJ . C 3 ZN A 1 702 702 ZN ZN . D 4 GOL A 1 703 703 GOL GOL . E 5 HOH A 1 801 1112 HOH HOH . E 5 HOH A 2 802 1171 HOH HOH . E 5 HOH A 3 803 1178 HOH HOH . E 5 HOH A 4 804 1126 HOH HOH . E 5 HOH A 5 805 1009 HOH HOH . E 5 HOH A 6 806 1024 HOH HOH . E 5 HOH A 7 807 1066 HOH HOH . E 5 HOH A 8 808 1138 HOH HOH . E 5 HOH A 9 809 1018 HOH HOH . E 5 HOH A 10 810 1076 HOH HOH . E 5 HOH A 11 811 1047 HOH HOH . E 5 HOH A 12 812 1034 HOH HOH . E 5 HOH A 13 813 1043 HOH HOH . E 5 HOH A 14 814 1149 HOH HOH . E 5 HOH A 15 815 1053 HOH HOH . E 5 HOH A 16 816 1042 HOH HOH . E 5 HOH A 17 817 1055 HOH HOH . E 5 HOH A 18 818 1030 HOH HOH . E 5 HOH A 19 819 1003 HOH HOH . E 5 HOH A 20 820 1143 HOH HOH . E 5 HOH A 21 821 1081 HOH HOH . E 5 HOH A 22 822 1016 HOH HOH . E 5 HOH A 23 823 1089 HOH HOH . E 5 HOH A 24 824 1106 HOH HOH . E 5 HOH A 25 825 1021 HOH HOH . E 5 HOH A 26 826 1083 HOH HOH . E 5 HOH A 27 827 1142 HOH HOH . E 5 HOH A 28 828 1071 HOH HOH . E 5 HOH A 29 829 1114 HOH HOH . E 5 HOH A 30 830 1085 HOH HOH . E 5 HOH A 31 831 1094 HOH HOH . E 5 HOH A 32 832 1029 HOH HOH . E 5 HOH A 33 833 1060 HOH HOH . E 5 HOH A 34 834 1099 HOH HOH . E 5 HOH A 35 835 1148 HOH HOH . E 5 HOH A 36 836 1062 HOH HOH . E 5 HOH A 37 837 1110 HOH HOH . E 5 HOH A 38 838 1013 HOH HOH . E 5 HOH A 39 839 1117 HOH HOH . E 5 HOH A 40 840 1001 HOH HOH . E 5 HOH A 41 841 1050 HOH HOH . E 5 HOH A 42 842 1051 HOH HOH . E 5 HOH A 43 843 1015 HOH HOH . E 5 HOH A 44 844 1010 HOH HOH . E 5 HOH A 45 845 1105 HOH HOH . E 5 HOH A 46 846 1033 HOH HOH . E 5 HOH A 47 847 1166 HOH HOH . E 5 HOH A 48 848 1027 HOH HOH . E 5 HOH A 49 849 1109 HOH HOH . E 5 HOH A 50 850 1069 HOH HOH . E 5 HOH A 51 851 1008 HOH HOH . E 5 HOH A 52 852 1125 HOH HOH . E 5 HOH A 53 853 1046 HOH HOH . E 5 HOH A 54 854 1174 HOH HOH . E 5 HOH A 55 855 1119 HOH HOH . E 5 HOH A 56 856 1041 HOH HOH . E 5 HOH A 57 857 1120 HOH HOH . E 5 HOH A 58 858 1026 HOH HOH . E 5 HOH A 59 859 1180 HOH HOH . E 5 HOH A 60 860 1045 HOH HOH . E 5 HOH A 61 861 1155 HOH HOH . E 5 HOH A 62 862 1070 HOH HOH . E 5 HOH A 63 863 1020 HOH HOH . E 5 HOH A 64 864 1152 HOH HOH . E 5 HOH A 65 865 1108 HOH HOH . E 5 HOH A 66 866 1006 HOH HOH . E 5 HOH A 67 867 1096 HOH HOH . E 5 HOH A 68 868 1031 HOH HOH . E 5 HOH A 69 869 1025 HOH HOH . E 5 HOH A 70 870 1144 HOH HOH . E 5 HOH A 71 871 1107 HOH HOH . E 5 HOH A 72 872 1023 HOH HOH . E 5 HOH A 73 873 1065 HOH HOH . E 5 HOH A 74 874 1139 HOH HOH . E 5 HOH A 75 875 1064 HOH HOH . E 5 HOH A 76 876 1074 HOH HOH . E 5 HOH A 77 877 1128 HOH HOH . E 5 HOH A 78 878 1088 HOH HOH . E 5 HOH A 79 879 1095 HOH HOH . E 5 HOH A 80 880 1002 HOH HOH . E 5 HOH A 81 881 1007 HOH HOH . E 5 HOH A 82 882 1073 HOH HOH . E 5 HOH A 83 883 1102 HOH HOH . E 5 HOH A 84 884 1165 HOH HOH . E 5 HOH A 85 885 1011 HOH HOH . E 5 HOH A 86 886 1162 HOH HOH . E 5 HOH A 87 887 1044 HOH HOH . E 5 HOH A 88 888 1054 HOH HOH . E 5 HOH A 89 889 1080 HOH HOH . E 5 HOH A 90 890 1038 HOH HOH . E 5 HOH A 91 891 1137 HOH HOH . E 5 HOH A 92 892 1039 HOH HOH . E 5 HOH A 93 893 1167 HOH HOH . E 5 HOH A 94 894 1059 HOH HOH . E 5 HOH A 95 895 1130 HOH HOH . E 5 HOH A 96 896 1063 HOH HOH . E 5 HOH A 97 897 1157 HOH HOH . E 5 HOH A 98 898 1004 HOH HOH . E 5 HOH A 99 899 1097 HOH HOH . E 5 HOH A 100 900 1075 HOH HOH . E 5 HOH A 101 901 1164 HOH HOH . E 5 HOH A 102 902 1154 HOH HOH . E 5 HOH A 103 903 1118 HOH HOH . E 5 HOH A 104 904 1136 HOH HOH . E 5 HOH A 105 905 1032 HOH HOH . E 5 HOH A 106 906 1057 HOH HOH . E 5 HOH A 107 907 1056 HOH HOH . E 5 HOH A 108 908 1156 HOH HOH . E 5 HOH A 109 909 1092 HOH HOH . E 5 HOH A 110 910 1150 HOH HOH . E 5 HOH A 111 911 1098 HOH HOH . E 5 HOH A 112 912 1084 HOH HOH . E 5 HOH A 113 913 1158 HOH HOH . E 5 HOH A 114 914 1005 HOH HOH . E 5 HOH A 115 915 1049 HOH HOH . E 5 HOH A 116 916 1121 HOH HOH . E 5 HOH A 117 917 1061 HOH HOH . E 5 HOH A 118 918 1160 HOH HOH . E 5 HOH A 119 919 1169 HOH HOH . E 5 HOH A 120 920 1040 HOH HOH . E 5 HOH A 121 921 1019 HOH HOH . E 5 HOH A 122 922 1187 HOH HOH . E 5 HOH A 123 923 1048 HOH HOH . E 5 HOH A 124 924 1127 HOH HOH . E 5 HOH A 125 925 1175 HOH HOH . E 5 HOH A 126 926 1176 HOH HOH . E 5 HOH A 127 927 1116 HOH HOH . E 5 HOH A 128 928 1012 HOH HOH . E 5 HOH A 129 929 1133 HOH HOH . E 5 HOH A 130 930 1079 HOH HOH . E 5 HOH A 131 931 1146 HOH HOH . E 5 HOH A 132 932 1072 HOH HOH . E 5 HOH A 133 933 1052 HOH HOH . E 5 HOH A 134 934 1124 HOH HOH . E 5 HOH A 135 935 1014 HOH HOH . E 5 HOH A 136 936 1093 HOH HOH . E 5 HOH A 137 937 1036 HOH HOH . E 5 HOH A 138 938 1028 HOH HOH . E 5 HOH A 139 939 1159 HOH HOH . E 5 HOH A 140 940 1017 HOH HOH . E 5 HOH A 141 941 1181 HOH HOH . E 5 HOH A 142 942 1104 HOH HOH . E 5 HOH A 143 943 1186 HOH HOH . E 5 HOH A 144 944 1140 HOH HOH . E 5 HOH A 145 945 1151 HOH HOH . E 5 HOH A 146 946 1129 HOH HOH . E 5 HOH A 147 947 1173 HOH HOH . E 5 HOH A 148 948 1058 HOH HOH . E 5 HOH A 149 949 1177 HOH HOH . E 5 HOH A 150 950 1182 HOH HOH . E 5 HOH A 151 951 1145 HOH HOH . E 5 HOH A 152 952 1131 HOH HOH . E 5 HOH A 153 953 1147 HOH HOH . E 5 HOH A 154 954 1188 HOH HOH . E 5 HOH A 155 955 1185 HOH HOH . E 5 HOH A 156 956 1035 HOH HOH . E 5 HOH A 157 957 1022 HOH HOH . E 5 HOH A 158 958 1183 HOH HOH . E 5 HOH A 159 959 1111 HOH HOH . E 5 HOH A 160 960 1179 HOH HOH . E 5 HOH A 161 961 1077 HOH HOH . E 5 HOH A 162 962 1086 HOH HOH . E 5 HOH A 163 963 1172 HOH HOH . E 5 HOH A 164 964 1141 HOH HOH . E 5 HOH A 165 965 1103 HOH HOH . E 5 HOH A 166 966 1168 HOH HOH . E 5 HOH A 167 967 1087 HOH HOH . E 5 HOH A 168 968 1090 HOH HOH . E 5 HOH A 169 969 1170 HOH HOH . E 5 HOH A 170 970 1184 HOH HOH . E 5 HOH A 171 971 1123 HOH HOH . E 5 HOH A 172 972 1091 HOH HOH . E 5 HOH A 173 973 1135 HOH HOH . E 5 HOH A 174 974 1134 HOH HOH . E 5 HOH A 175 975 1078 HOH HOH . E 5 HOH A 176 976 1132 HOH HOH . E 5 HOH A 177 977 1037 HOH HOH . E 5 HOH A 178 978 1161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 24.041 12.218 40.014 1 41.96 ? C1 GOL 703 A 1 HETATM 2 O O1 GOL . . . D 4 24.384 13.335 40.775 1 34.43 ? O1 GOL 703 A 1 HETATM 3 C C2 GOL . . . D 4 24.942 12.233 38.758 1 43.3 ? C2 GOL 703 A 1 HETATM 4 O O2 GOL . . . D 4 24.808 11.071 38.011 1 58.23 ? O2 GOL 703 A 1 HETATM 5 C C3 GOL . . . D 4 24.508 13.489 37.97 1 39.18 ? C3 GOL 703 A 1 HETATM 6 O O3 GOL . . . D 4 25.232 13.485 36.778 1 58.32 ? O3 GOL 703 A 1 HETATM 7 H H11 GOL . . . D 4 23.11 12.224 39.741 1 50.46 ? H11 GOL 703 A 1 HETATM 8 H H12 GOL . . . D 4 24.172 11.385 40.493 1 50.46 ? H12 GOL 703 A 1 HETATM 9 H HO1 GOL . . . D 4 23.843 13.357 41.431 1 41.41 ? HO1 GOL 703 A 1 HETATM 10 H H2 GOL . . . D 4 25.878 12.286 39.008 1 52.06 ? H2 GOL 703 A 1 HETATM 11 H HO2 GOL . . . D 4 23.989 10.989 37.801 1 69.98 ? HO2 GOL 703 A 1 HETATM 12 H H31 GOL . . . D 4 24.669 14.274 38.516 1 47.11 ? H31 GOL 703 A 1 HETATM 13 H H32 GOL . . . D 4 23.548 13.461 37.838 1 47.11 ? H32 GOL 703 A 1 HETATM 14 H HO3 GOL . . . D 4 26.05 13.591 36.989 1 70.09 ? HO3 GOL 703 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 14 #