data_8S9G # _model_server_result.job_id qipD9QC94ZWuKpz4dtfQrg _model_server_result.datetime_utc '2024-11-21 10:21:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":601}' # _entry.id 8S9G # _exptl.entry_id 8S9G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 5 5 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 B 1 NAG E 1321 NAG 5 n E NAG 2 B 2 NAG E 1322 NAG 5 n E BMA 3 B 3 BMA E 1323 BMA 5 n E MAN 4 B 4 MAN E 1324 MAN 5 n E FUC 5 B 5 FUC E 1320 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 115 A CYS 133 1_555 A SG CYS 123 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 326 A CYS 344 1_555 A SG CYS 343 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf3 A SG CYS 512 A CYS 530 1_555 A SG CYS 524 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf4 B SG CYS 28 E CYS 336 1_555 B SG CYS 53 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 B SG CYS 71 E CYS 379 1_555 B SG CYS 124 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? disulf ? disulf6 B SG CYS 83 E CYS 391 1_555 B SG CYS 217 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf7 B SG CYS 172 E CYS 480 1_555 B SG CYS 180 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 D SG CYS 23 L CYS 23 1_555 D SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? covale ? covale1 A ND2 ASN 35 A ASN 53 1_555 G C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale2 A ND2 ASN 72 A ASN 90 1_555 F C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? covale ? covale3 A ND2 ASN 85 A ASN 103 1_555 I C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale4 A ND2 ASN 304 A ASN 322 1_555 H C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? covale ? covale5 B ND2 ASN 35 E ASN 343 1_555 E C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale6 B ND2 ASN 46 E ASN 354 1_555 J C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? covale ? covale7 E O4 NAG . B NAG 1 1_555 E C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale8 E O6 NAG . B NAG 1 1_555 E C1 FUC . B FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? covale ? covale9 E O4 NAG . B NAG 2 1_555 E C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale10 E O6 BMA . B BMA 3 1_555 E C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 306 n n C1 O1 NAG sing 307 n n C1 O5 NAG sing 308 n n C1 H1 NAG sing 309 n n C2 C3 NAG sing 310 n n C2 N2 NAG sing 311 n n C2 H2 NAG sing 312 n n C3 C4 NAG sing 313 n n C3 O3 NAG sing 314 n n C3 H3 NAG sing 315 n n C4 C5 NAG sing 316 n n C4 O4 NAG sing 317 n n C4 H4 NAG sing 318 n n C5 C6 NAG sing 319 n n C5 O5 NAG sing 320 n n C5 H5 NAG sing 321 n n C6 O6 NAG sing 322 n n C6 H61 NAG sing 323 n n C6 H62 NAG sing 324 n n C7 C8 NAG sing 325 n n C7 N2 NAG sing 326 n n C7 O7 NAG doub 327 n n C8 H81 NAG sing 328 n n C8 H82 NAG sing 329 n n C8 H83 NAG sing 330 n n N2 HN2 NAG sing 331 n n O1 HO1 NAG sing 332 n n O3 HO3 NAG sing 333 n n O4 HO4 NAG sing 334 n n O6 HO6 NAG sing 335 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8S9G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 701 702 NAG NAG . G 6 NAG A 1 702 703 NAG NAG . H 6 NAG A 1 703 801 NAG NAG . I 6 NAG A 1 704 901 NAG NAG . J 6 NAG E 1 601 1354 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 6 124.129 94.892 116.516 1 11.52 ? C1 NAG 601 E 1 HETATM 2 C C2 NAG . . . J 6 123.869 96.051 115.492 1 11.57 ? C2 NAG 601 E 1 HETATM 3 C C3 NAG . . . J 6 122.735 95.613 114.541 1 11.68 ? C3 NAG 601 E 1 HETATM 4 C C4 NAG . . . J 6 123.158 94.317 113.821 1 11.81 ? C4 NAG 601 E 1 HETATM 5 C C5 NAG . . . J 6 123.438 93.227 114.879 1 11.74 ? C5 NAG 601 E 1 HETATM 6 C C6 NAG . . . J 6 123.919 91.94 114.232 1 11.91 ? C6 NAG 601 E 1 HETATM 7 C C7 NAG . . . J 6 124.04 98.423 115.992 1 11.15 ? C7 NAG 601 E 1 HETATM 8 C C8 NAG . . . J 6 123.611 99.651 116.737 1 10.87 ? C8 NAG 601 E 1 HETATM 9 N N2 NAG . . . J 6 123.452 97.254 116.225 1 11.42 ? N2 NAG 601 E 1 HETATM 10 O O3 NAG . . . J 6 122.485 96.643 113.575 1 11.97 ? O3 NAG 601 E 1 HETATM 11 O O4 NAG . . . J 6 122.109 93.9 112.955 1 12.05 ? O4 NAG 601 E 1 HETATM 12 O O5 NAG . . . J 6 124.483 93.685 115.801 1 11.61 ? O5 NAG 601 E 1 HETATM 13 O O6 NAG . . . J 6 124.026 90.892 115.186 1 12.06 ? O6 NAG 601 E 1 HETATM 14 O O7 NAG . . . J 6 124.949 98.506 115.157 1 11.16 ? O7 NAG 601 E 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 14 #