data_8S9R # _model_server_result.job_id kIIhgy2nSnI_2AoLOgV3uQ _model_server_result.datetime_utc '2024-12-21 16:50:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s9r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 8S9R # _exptl.entry_id 8S9R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8S9R _cell.length_a 129.146 _cell.length_b 129.146 _cell.length_c 251.791 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8S9R _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_554 y,x,-z-1/4 0 1 0 1 0 0 0 0 -1 0 0 -62.94775 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 69 A ASP 64 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc2 A OD2 ASP 69 A ASP 64 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 A NE2 HIS 89 A HIS 84 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc4 A NE2 HIS 95 A HIS 90 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc5 A OD2 ASP 241 A ASP 236 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc6 A O GLY 288 A GLY 283 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc7 A OD2 ASP 353 A ASP 348 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc8 A OD1 ASP 356 A ASP 351 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc9 A OD2 ASP 356 A ASP 351 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc10 A OD2 ASP 361 A ASP 356 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc11 A OD2 ASP 364 A ASP 359 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc12 E CA CA . A CA 403 1_555 J O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc13 B OD1 ASP 69 B ASP 64 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc14 B OD2 ASP 69 B ASP 64 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc15 B NE2 HIS 89 B HIS 84 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc16 B NE2 HIS 95 B HIS 90 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc17 B OD2 ASP 241 B ASP 236 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc18 B O GLY 288 B GLY 283 1_555 I CA CA . B CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc19 B OD2 ASP 353 B ASP 348 1_555 I CA CA . B CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc20 B OD1 ASP 356 B ASP 351 1_555 I CA CA . B CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc21 B OD2 ASP 356 B ASP 351 1_555 I CA CA . B CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc22 B OD2 ASP 361 B ASP 356 1_555 I CA CA . B CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc23 B OD2 ASP 364 B ASP 359 1_555 I CA CA . B CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc24 I CA CA . B CA 404 1_555 K O HOH . B HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 247 n n P O2 PO4 sing 248 n n P O3 PO4 sing 249 n n P O4 PO4 sing 250 n n # _atom_sites.entry_id 8S9R _atom_sites.fract_transf_matrix[1][1] 0.007743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 2 ZN ZN . D 3 PO4 A 1 402 1 PO4 PO4 . E 4 CA A 1 403 2 CA CA . F 2 ZN B 1 401 1 ZN ZN . G 3 PO4 B 1 402 2 PO4 PO4 . H 3 PO4 B 1 403 5 PO4 PO4 . I 4 CA B 1 404 1 CA CA . J 5 HOH A 1 501 27 HOH HOH . J 5 HOH A 2 502 79 HOH HOH . J 5 HOH A 3 503 47 HOH HOH . J 5 HOH A 4 504 124 HOH HOH . J 5 HOH A 5 505 114 HOH HOH . J 5 HOH A 6 506 88 HOH HOH . J 5 HOH A 7 507 56 HOH HOH . J 5 HOH A 8 508 8 HOH HOH . J 5 HOH A 9 509 63 HOH HOH . J 5 HOH A 10 510 121 HOH HOH . J 5 HOH A 11 511 68 HOH HOH . J 5 HOH A 12 512 106 HOH HOH . J 5 HOH A 13 513 61 HOH HOH . J 5 HOH A 14 514 118 HOH HOH . J 5 HOH A 15 515 4 HOH HOH . J 5 HOH A 16 516 46 HOH HOH . J 5 HOH A 17 517 102 HOH HOH . J 5 HOH A 18 518 51 HOH HOH . J 5 HOH A 19 519 29 HOH HOH . J 5 HOH A 20 520 70 HOH HOH . J 5 HOH A 21 521 13 HOH HOH . J 5 HOH A 22 522 67 HOH HOH . J 5 HOH A 23 523 15 HOH HOH . J 5 HOH A 24 524 43 HOH HOH . J 5 HOH A 25 525 32 HOH HOH . J 5 HOH A 26 526 35 HOH HOH . J 5 HOH A 27 527 122 HOH HOH . J 5 HOH A 28 528 45 HOH HOH . J 5 HOH A 29 529 3 HOH HOH . J 5 HOH A 30 530 21 HOH HOH . J 5 HOH A 31 531 58 HOH HOH . J 5 HOH A 32 532 120 HOH HOH . J 5 HOH A 33 533 30 HOH HOH . J 5 HOH A 34 534 75 HOH HOH . J 5 HOH A 35 535 11 HOH HOH . J 5 HOH A 36 536 17 HOH HOH . J 5 HOH A 37 537 101 HOH HOH . J 5 HOH A 38 538 5 HOH HOH . J 5 HOH A 39 539 7 HOH HOH . J 5 HOH A 40 540 69 HOH HOH . J 5 HOH A 41 541 2 HOH HOH . J 5 HOH A 42 542 62 HOH HOH . J 5 HOH A 43 543 33 HOH HOH . J 5 HOH A 44 544 26 HOH HOH . J 5 HOH A 45 545 20 HOH HOH . J 5 HOH A 46 546 28 HOH HOH . J 5 HOH A 47 547 55 HOH HOH . J 5 HOH A 48 548 84 HOH HOH . J 5 HOH A 49 549 116 HOH HOH . J 5 HOH A 50 550 65 HOH HOH . J 5 HOH A 51 551 64 HOH HOH . J 5 HOH A 52 552 19 HOH HOH . J 5 HOH A 53 553 16 HOH HOH . J 5 HOH A 54 554 73 HOH HOH . J 5 HOH A 55 555 25 HOH HOH . J 5 HOH A 56 556 10 HOH HOH . J 5 HOH A 57 557 123 HOH HOH . J 5 HOH A 58 558 34 HOH HOH . J 5 HOH A 59 559 71 HOH HOH . J 5 HOH A 60 560 53 HOH HOH . J 5 HOH A 61 561 50 HOH HOH . J 5 HOH A 62 562 42 HOH HOH . J 5 HOH A 63 563 83 HOH HOH . J 5 HOH A 64 564 90 HOH HOH . J 5 HOH A 65 565 31 HOH HOH . J 5 HOH A 66 566 40 HOH HOH . J 5 HOH A 67 567 97 HOH HOH . J 5 HOH A 68 568 49 HOH HOH . J 5 HOH A 69 569 107 HOH HOH . J 5 HOH A 70 570 119 HOH HOH . J 5 HOH A 71 571 103 HOH HOH . J 5 HOH A 72 572 78 HOH HOH . J 5 HOH A 73 573 87 HOH HOH . J 5 HOH A 74 574 89 HOH HOH . J 5 HOH A 75 575 44 HOH HOH . J 5 HOH A 76 576 66 HOH HOH . J 5 HOH A 77 577 96 HOH HOH . J 5 HOH A 78 578 92 HOH HOH . K 5 HOH B 1 501 54 HOH HOH . K 5 HOH B 2 502 38 HOH HOH . K 5 HOH B 3 503 24 HOH HOH . K 5 HOH B 4 504 113 HOH HOH . K 5 HOH B 5 505 14 HOH HOH . K 5 HOH B 6 506 93 HOH HOH . K 5 HOH B 7 507 48 HOH HOH . K 5 HOH B 8 508 9 HOH HOH . K 5 HOH B 9 509 18 HOH HOH . K 5 HOH B 10 510 100 HOH HOH . K 5 HOH B 11 511 6 HOH HOH . K 5 HOH B 12 512 52 HOH HOH . K 5 HOH B 13 513 72 HOH HOH . K 5 HOH B 14 514 91 HOH HOH . K 5 HOH B 15 515 37 HOH HOH . K 5 HOH B 16 516 23 HOH HOH . K 5 HOH B 17 517 117 HOH HOH . K 5 HOH B 18 518 77 HOH HOH . K 5 HOH B 19 519 82 HOH HOH . K 5 HOH B 20 520 80 HOH HOH . K 5 HOH B 21 521 41 HOH HOH . K 5 HOH B 22 522 105 HOH HOH . K 5 HOH B 23 523 59 HOH HOH . K 5 HOH B 24 524 99 HOH HOH . K 5 HOH B 25 525 81 HOH HOH . K 5 HOH B 26 526 12 HOH HOH . K 5 HOH B 27 527 74 HOH HOH . K 5 HOH B 28 528 60 HOH HOH . K 5 HOH B 29 529 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . H 3 -16.051 -48.772 -5.968 0.68 104.04 ? P PO4 403 B 1 HETATM 2 O O1 PO4 . . . H 3 -16.648 -47.819 -6.985 0.68 94.12 ? O1 PO4 403 B 1 HETATM 3 O O2 PO4 . . . H 3 -14.585 -49 -6.27 0.68 93.53 ? O2 PO4 403 B 1 HETATM 4 O O3 PO4 . . . H 3 -16.791 -50.09 -6.035 0.68 105.04 ? O3 PO4 403 B 1 HETATM 5 O O4 PO4 . . . H 3 -16.193 -48.207 -4.568 0.68 97.16 ? O4 PO4 403 B 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #