data_8S9S # _model_server_result.job_id igH6btGvLBFFxvOAujOukA _model_server_result.datetime_utc '2025-09-07 02:29:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8s9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1002}' # _entry.id 8S9S # _exptl.entry_id 8S9S _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.121 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8S9S _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8S9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 N N N ? 12 O N N ? 12 P N N ? 12 Q N N ? 12 R N N ? 12 S N N # _pdbx_entity_branch.entity_id 10 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 10 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 10 n J NAG 1 A 1 NAG 1 1000 NAG 10 n J NAG 2 A 2 NAG 1 1001 NAG 10 n K NAG 1 B 1 NAG 1 1003 NAG 10 n K NAG 2 B 2 NAG 1 1004 NAG 10 n L NAG 1 C 1 NAG 10 211 NAG 10 n L NAG 2 C 2 NAG 10 212 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 227 1 CYS 227 1_555 A SG CYS 237 1 CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 338 1 CYS 338 1_555 A SG CYS 368 1 CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 370 1 ASN 370 1_555 M C1 NAG . 1 NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 818 1 ASN 818 1_555 K C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 913 1 ASN 913 1_555 J C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 I ND2 ASN 182 10 ASN 182 1_555 L C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 J O4 NAG . A NAG 1 1_555 J C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 K O4 NAG . B NAG 1 1_555 K C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 L O4 NAG . C NAG 1 1_555 L C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 265 n n C1 O3P PCW sing 266 n n C1 H11 PCW sing 267 n n C1 H12 PCW sing 268 n n C2 C3 PCW sing 269 n n C2 O2 PCW sing 270 n n C2 H2 PCW sing 271 n n C3 O3 PCW sing 272 n n C3 H31 PCW sing 273 n n C3 H32 PCW sing 274 n n C4 C5 PCW sing 275 n n C4 O4P PCW sing 276 n n C4 H41 PCW sing 277 n n C4 H42 PCW sing 278 n n C5 N PCW sing 279 n n C5 H51 PCW sing 280 n n C5 H52 PCW sing 281 n n C6 N PCW sing 282 n n C6 H61 PCW sing 283 n n C6 H62 PCW sing 284 n n C6 H63 PCW sing 285 n n C7 N PCW sing 286 n n C7 H71 PCW sing 287 n n C7 H72 PCW sing 288 n n C7 H73 PCW sing 289 n n C8 N PCW sing 290 n n C8 H81 PCW sing 291 n n C8 H82 PCW sing 292 n n C8 H83 PCW sing 293 n n C11 C12 PCW sing 294 n n C11 O3 PCW sing 295 n n C11 O11 PCW doub 296 n n C12 C13 PCW sing 297 n n C12 H121 PCW sing 298 n n C12 H122 PCW sing 299 n n C13 C14 PCW sing 300 n n C13 H131 PCW sing 301 n n C13 H132 PCW sing 302 n n C14 C15 PCW sing 303 n n C14 H141 PCW sing 304 n n C14 H142 PCW sing 305 n n C15 C16 PCW sing 306 n n C15 H151 PCW sing 307 n n C15 H152 PCW sing 308 n n C16 C17 PCW sing 309 n n C16 H161 PCW sing 310 n n C16 H162 PCW sing 311 n n C17 C18 PCW sing 312 n n C17 H171 PCW sing 313 n n C17 H172 PCW sing 314 n n C18 C19 PCW sing 315 n n C18 H181 PCW sing 316 n n C18 H182 PCW sing 317 n n C19 C20 PCW doub 318 z n C19 H19 PCW sing 319 n n C20 C21 PCW sing 320 n n C20 H20 PCW sing 321 n n C21 C22 PCW sing 322 n n C21 H211 PCW sing 323 n n C21 H212 PCW sing 324 n n C22 C23 PCW sing 325 n n C22 H221 PCW sing 326 n n C22 H222 PCW sing 327 n n C23 C24 PCW sing 328 n n C23 H231 PCW sing 329 n n C23 H232 PCW sing 330 n n C24 C25 PCW sing 331 n n C24 H241 PCW sing 332 n n C24 H242 PCW sing 333 n n C25 C26 PCW sing 334 n n C25 H251 PCW sing 335 n n C25 H252 PCW sing 336 n n C26 C27 PCW sing 337 n n C26 H261 PCW sing 338 n n C26 H262 PCW sing 339 n n C27 C28 PCW sing 340 n n C27 H271 PCW sing 341 n n C27 H272 PCW sing 342 n n C28 H281 PCW sing 343 n n C28 H282 PCW sing 344 n n C28 H283 PCW sing 345 n n C31 C32 PCW sing 346 n n C31 O2 PCW sing 347 n n C31 O31 PCW doub 348 n n C32 C33 PCW sing 349 n n C32 H321 PCW sing 350 n n C32 H322 PCW sing 351 n n C33 C34 PCW sing 352 n n C33 H331 PCW sing 353 n n C33 H332 PCW sing 354 n n C34 C35 PCW sing 355 n n C34 H341 PCW sing 356 n n C34 H342 PCW sing 357 n n C35 C36 PCW sing 358 n n C35 H351 PCW sing 359 n n C35 H352 PCW sing 360 n n C36 C37 PCW sing 361 n n C36 H361 PCW sing 362 n n C36 H362 PCW sing 363 n n C37 C38 PCW sing 364 n n C37 H371 PCW sing 365 n n C37 H372 PCW sing 366 n n C38 C39 PCW sing 367 n n C38 H381 PCW sing 368 n n C38 H382 PCW sing 369 n n C39 C40 PCW doub 370 z n C39 H39 PCW sing 371 n n C40 C41 PCW sing 372 n n C40 H40 PCW sing 373 n n C41 C42 PCW sing 374 n n C41 H411 PCW sing 375 n n C41 H412 PCW sing 376 n n C42 C43 PCW sing 377 n n C42 H421 PCW sing 378 n n C42 H422 PCW sing 379 n n C43 C44 PCW sing 380 n n C43 H431 PCW sing 381 n n C43 H432 PCW sing 382 n n C44 C45 PCW sing 383 n n C44 H441 PCW sing 384 n n C44 H442 PCW sing 385 n n C45 C46 PCW sing 386 n n C45 H451 PCW sing 387 n n C45 H452 PCW sing 388 n n C46 C47 PCW sing 389 n n C46 H461 PCW sing 390 n n C46 H462 PCW sing 391 n n C47 C48 PCW sing 392 n n C47 H471 PCW sing 393 n n C47 H472 PCW sing 394 n n C48 H481 PCW sing 395 n n C48 H482 PCW sing 396 n n C48 H483 PCW sing 397 n n O1P P PCW sing 398 n n O1P H1P PCW sing 399 n n O2P P PCW doub 400 n n O3P P PCW sing 401 n n O4P P PCW sing 402 n n # _atom_sites.entry_id 8S9S _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 11 NAG 1 1 1001 1002 NAG NAG . N 12 PCW 1 1 1002 401 PCW PCW . O 12 PCW 3 1 301 402 PCW PCW . P 12 PCW 3 1 302 403 PCW PCW . Q 12 PCW 3 1 303 404 PCW PCW . R 12 PCW 6 1 201 201 PCW PCW . S 12 PCW 6 1 202 301 PCW PCW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . N 12 166.029 181.564 183.726 1 106.11 ? C1 PCW 1002 1 1 HETATM 2 C C2 PCW . . . N 12 166.217 182.308 182.398 1 106.11 ? C2 PCW 1002 1 1 HETATM 3 C C3 PCW . . . N 12 165.678 183.729 182.551 1 106.11 ? C3 PCW 1002 1 1 HETATM 4 C C4 PCW . . . N 12 167.818 181.647 187.837 1 106.11 ? C4 PCW 1002 1 1 HETATM 5 C C5 PCW . . . N 12 166.29 181.345 187.801 1 106.11 ? C5 PCW 1002 1 1 HETATM 6 C C6 PCW . . . N 12 166.355 181.308 190.225 1 106.11 ? C6 PCW 1002 1 1 HETATM 7 C C7 PCW . . . N 12 165.68 183.307 189.076 1 106.11 ? C7 PCW 1002 1 1 HETATM 8 C C8 PCW . . . N 12 164.245 181.382 189.085 1 106.11 ? C8 PCW 1002 1 1 HETATM 9 C C11 PCW . . . N 12 165.382 185.458 180.946 1 106.11 ? C11 PCW 1002 1 1 HETATM 10 C C12 PCW . . . N 12 165.873 185.726 179.506 1 106.11 ? C12 PCW 1002 1 1 HETATM 11 C C13 PCW . . . N 12 167.399 186.021 179.518 1 106.11 ? C13 PCW 1002 1 1 HETATM 12 C C14 PCW . . . N 12 168.028 185.486 178.208 1 106.11 ? C14 PCW 1002 1 1 HETATM 13 C C15 PCW . . . N 12 169.262 186.339 177.836 1 106.11 ? C15 PCW 1002 1 1 HETATM 14 C C16 PCW . . . N 12 170.174 185.529 176.888 1 106.11 ? C16 PCW 1002 1 1 HETATM 15 C C17 PCW . . . N 12 170.463 186.364 175.616 1 106.11 ? C17 PCW 1002 1 1 HETATM 16 C C19 PCW . . . N 12 167.232 185.582 171.604 1 106.11 ? C19 PCW 1002 1 1 HETATM 17 C C31 PCW . . . N 12 168.006 181.426 181.1 1 106.11 ? C31 PCW 1002 1 1 HETATM 18 C C32 PCW . . . N 12 169.122 181.815 180.094 1 106.11 ? C32 PCW 1002 1 1 HETATM 19 C C33 PCW . . . N 12 170.261 180.768 180.145 1 106.11 ? C33 PCW 1002 1 1 HETATM 20 C C34 PCW . . . N 12 170.007 179.667 179.08 1 106.11 ? C34 PCW 1002 1 1 HETATM 21 N N PCW . . . N 12 165.643 181.834 189.052 1 106.11 ? N PCW 1002 1 1 HETATM 22 O O2 PCW . . . N 12 167.589 182.359 182.088 1 106.11 ? O2 PCW 1002 1 1 HETATM 23 O O3 PCW . . . N 12 165.036 184.142 181.347 1 106.11 ? O3 PCW 1002 1 1 HETATM 24 O O11 PCW . . . N 12 165.297 186.352 181.718 1 106.11 ? O11 PCW 1002 1 1 HETATM 25 O O31 PCW . . . N 12 167.499 180.351 181.042 1 106.11 ? O31 PCW 1002 1 1 HETATM 26 O O1P PCW . . . N 12 168.585 180.969 185.015 1 106.11 ? O1P PCW 1002 1 1 HETATM 27 O O2P PCW . . . N 12 168.833 183.372 184.519 1 106.11 ? O2P PCW 1002 1 1 HETATM 28 O O3P PCW . . . N 12 166.439 182.41 184.787 1 106.11 ? O3P PCW 1002 1 1 HETATM 29 O O4P PCW . . . N 12 168.119 182.68 186.909 1 106.11 ? O4P PCW 1002 1 1 HETATM 30 P P PCW . . . N 12 168.027 182.348 185.283 1 106.11 ? P PCW 1002 1 1 # _model_server_stats.io_time_ms 125 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #