data_8SAI # _model_server_result.job_id pRngAZKG2oNvHinLL0SUwQ _model_server_result.datetime_utc '2024-10-11 00:30:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8SAI # _exptl.entry_id 8SAI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.597 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description O-[(S)-hydroxy{[(2S)-2-hydroxy-3-(octadec-9-enoyloxy)propyl]oxy}phosphoryl]-L-serine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SAI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 220 A CYS 127 1_555 A SG CYS 297 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 E SG CYS 159 S CYS 159 1_555 E SG CYS 229 S CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C24 H46 N O9 P' _chem_comp.formula_weight 523.597 _chem_comp.id S12 _chem_comp.mon_nstd_flag n _chem_comp.name O-[(S)-hydroxy{[(2S)-2-hydroxy-3-(octadec-9-enoyloxy)propyl]oxy}phosphoryl]-L-serine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms 1-oleoyl-2-hydroxy-sn-glycero-3-phospho-L-serine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C CA S12 sing 275 n n C O S12 doub 276 n n C OXT S12 sing 277 n n N CA S12 sing 278 n n N H S12 sing 279 n n N H2 S12 sing 280 n n P OG S12 sing 281 n n P O2 S12 sing 282 n n P O3 S12 doub 283 n n P O4 S12 sing 284 n n OG CB S12 sing 285 n n C2 O2 S12 sing 286 n n C2 C3 S12 sing 287 n n C2 H2B S12 sing 288 n n C2 H2A S12 sing 289 n n C3 C4 S12 sing 290 n n C3 O11 S12 sing 291 n n C3 H3 S12 sing 292 n n C4 O52 S12 sing 293 n n C4 H4 S12 sing 294 n n C4 H4A S12 sing 295 n n C5 C6 S12 sing 296 n n C5 O51 S12 doub 297 n n C5 O52 S12 sing 298 n n C6 C7 S12 sing 299 n n C6 H6 S12 sing 300 n n C6 H6A S12 sing 301 n n C7 C8 S12 sing 302 n n C7 H7 S12 sing 303 n n C8 C9 S12 sing 304 n n C8 H8 S12 sing 305 n n C9 C10 S12 sing 306 n n C9 H9 S12 sing 307 n n C9 H9A S12 sing 308 n n CA CB S12 sing 309 n n CA HA S12 sing 310 n n CB HB2 S12 sing 311 n n CB HB3 S12 sing 312 n n C10 C11 S12 sing 313 n n C10 H10 S12 sing 314 n n C11 C12 S12 sing 315 n n C11 H11 S12 sing 316 n n O11 HO11 S12 sing 317 n n C12 C13 S12 sing 318 n n C12 H12 S12 sing 319 n n C13 C14 S12 doub 320 e n C14 H14 S12 sing 321 n n C14 C15 S12 sing 322 n n C15 C16 S12 sing 323 n n C16 C17 S12 sing 324 n n C17 C18 S12 sing 325 n n C18 C19 S12 sing 326 n n C19 C20 S12 sing 327 n n C20 C21 S12 sing 328 n n C21 C22 S12 sing 329 n n O4 H22 S12 sing 330 n n C7 H23 S12 sing 331 n n C8 H24 S12 sing 332 n n C10 H25 S12 sing 333 n n C11 H26 S12 sing 334 n n C12 H27 S12 sing 335 n n C13 H28 S12 sing 336 n n OXT HXT S12 sing 337 n n C15 H30 S12 sing 338 n n C15 H31 S12 sing 339 n n C16 H32 S12 sing 340 n n C16 H33 S12 sing 341 n n C17 H34 S12 sing 342 n n C17 H35 S12 sing 343 n n C18 H36 S12 sing 344 n n C18 H37 S12 sing 345 n n C19 H38 S12 sing 346 n n C19 H39 S12 sing 347 n n C20 H40 S12 sing 348 n n C20 H41 S12 sing 349 n n C21 H42 S12 sing 350 n n C21 H43 S12 sing 351 n n C22 H44 S12 sing 352 n n C22 H45 S12 sing 353 n n C22 H46 S12 sing 354 n n # _atom_sites.entry_id 8SAI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id S12 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id S12 _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C S12 . . . F 6 118.935 106.966 81.511 1 92.45 ? C S12 401 A 1 HETATM 2 N N S12 . . . F 6 120.595 108.721 81.804 1 92.45 ? N S12 401 A 1 HETATM 3 P P S12 . . . F 6 123.125 105.017 83.323 1 92.45 ? P S12 401 A 1 HETATM 4 O OG S12 . . . F 6 122.231 105.918 82.272 1 92.45 ? OG S12 401 A 1 HETATM 5 C C2 S12 . . . F 6 121.35 103.373 84.33 1 92.45 ? C2 S12 401 A 1 HETATM 6 O O2 S12 . . . F 6 122.163 104.489 84.553 1 92.45 ? O2 S12 401 A 1 HETATM 7 C C3 S12 . . . F 6 120.794 102.905 85.673 1 92.45 ? C3 S12 401 A 1 HETATM 8 O O3 S12 . . . F 6 123.71 103.83 82.596 1 92.45 -1 O3 S12 401 A 1 HETATM 9 C C4 S12 . . . F 6 119.788 103.93 86.193 1 92.45 ? C4 S12 401 A 1 HETATM 10 O O4 S12 . . . F 6 124.243 105.863 83.885 1 92.45 ? O4 S12 401 A 1 HETATM 11 C C5 S12 . . . F 6 117.661 103.798 87.168 1 92.45 ? C5 S12 401 A 1 HETATM 12 C C6 S12 . . . F 6 118.232 104.182 88.531 1 92.45 ? C6 S12 401 A 1 HETATM 13 C C7 S12 . . . F 6 117.225 103.977 89.66 1 92.45 ? C7 S12 401 A 1 HETATM 14 C C8 S12 . . . F 6 117.365 102.607 90.32 1 92.45 ? C8 S12 401 A 1 HETATM 15 C C9 S12 . . . F 6 118.784 102.054 90.206 1 92.45 ? C9 S12 401 A 1 HETATM 16 C CA S12 . . . F 6 120.424 107.295 81.586 1 92.45 ? CA S12 401 A 1 HETATM 17 C CB S12 . . . F 6 121.06 106.524 82.74 1 92.45 ? CB S12 401 A 1 HETATM 18 C C10 S12 . . . F 6 119.835 103.066 90.656 1 92.45 ? C10 S12 401 A 1 HETATM 19 C C11 S12 . . . F 6 119.918 103.177 92.177 1 92.45 ? C11 S12 401 A 1 HETATM 20 O O11 S12 . . . F 6 121.843 102.773 86.592 1 92.45 ? O11 S12 401 A 1 HETATM 21 C C12 S12 . . . F 6 118.542 103.336 92.821 1 92.45 ? C12 S12 401 A 1 HETATM 22 C C13 S12 . . . F 6 118.466 104.561 93.73 1 92.45 ? C13 S12 401 A 1 HETATM 23 C C14 S12 . . . F 6 117.371 104.794 94.424 1 92.45 ? C14 S12 401 A 1 HETATM 24 O O51 S12 . . . F 6 116.494 103.874 86.972 1 92.45 ? O51 S12 401 A 1 HETATM 25 O O52 S12 . . . F 6 118.513 103.356 86.152 1 92.45 ? O52 S12 401 A 1 HETATM 26 O O S12 . . . F 6 118.096 107.711 82.081 1 92.45 ? O S12 401 A 1 HETATM 27 O OXT S12 . . . F 6 118.547 105.949 80.878 1 92.45 ? OXT S12 401 A 1 HETATM 28 C C15 S12 . . . F 6 116.186 103.838 94.317 1 92.45 ? C15 S12 401 A 1 HETATM 29 C C16 S12 . . . F 6 115.934 103.081 95.619 1 92.45 ? C16 S12 401 A 1 HETATM 30 C C17 S12 . . . F 6 116.337 103.895 96.847 1 92.45 ? C17 S12 401 A 1 HETATM 31 C C18 S12 . . . F 6 115.299 104.956 97.204 1 92.45 ? C18 S12 401 A 1 HETATM 32 C C19 S12 . . . F 6 115.304 105.292 98.694 1 92.45 ? C19 S12 401 A 1 HETATM 33 C C20 S12 . . . F 6 113.915 105.667 99.207 1 92.45 ? C20 S12 401 A 1 HETATM 34 C C21 S12 . . . F 6 112.864 104.62 98.848 1 92.45 ? C21 S12 401 A 1 HETATM 35 C C22 S12 . . . F 6 112.726 103.546 99.925 1 92.45 ? C22 S12 401 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #