data_8SBR # _model_server_result.job_id 5UKDAE7w26KIWyoLiLWNLA _model_server_result.datetime_utc '2024-11-05 06:44:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 8SBR # _exptl.entry_id 8SBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SBR _cell.length_a 163.324 _cell.length_b 106.782 _cell.length_c 132.825 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 70 n n N1 C6 CTP sing 71 n n N1 C1' CTP sing 72 n n C2 N3 CTP sing 73 n n C2 O2 CTP doub 74 n n N3 C4 CTP doub 75 n n C4 C5 CTP sing 76 n n C4 N4 CTP sing 77 n n C5 C6 CTP doub 78 n n C5 H5 CTP sing 79 n n C6 H6 CTP sing 80 n n N4 HN41 CTP sing 81 n n N4 HN42 CTP sing 82 n n C1' C2' CTP sing 83 n n C1' O4' CTP sing 84 n n C1' H1' CTP sing 85 n n C2' O2' CTP sing 86 n n C2' C3' CTP sing 87 n n C2' H2' CTP sing 88 n n O2' HO2' CTP sing 89 n n C3' C4' CTP sing 90 n n C3' O3' CTP sing 91 n n C3' H3' CTP sing 92 n n C4' O4' CTP sing 93 n n C4' C5' CTP sing 94 n n C4' H4' CTP sing 95 n n O3' HO3' CTP sing 96 n n C5' O5' CTP sing 97 n n C5' "H5'1" CTP sing 98 n n C5' "H5'2" CTP sing 99 n n O5' PA CTP sing 100 n n PA O1A CTP doub 101 n n PA O2A CTP sing 102 n n PA O3A CTP sing 103 n n O2A HOA2 CTP sing 104 n n O3A PB CTP sing 105 n n PB O1B CTP doub 106 n n PB O2B CTP sing 107 n n PB O3B CTP sing 108 n n O2B HOB2 CTP sing 109 n n O3B PG CTP sing 110 n n PG O1G CTP doub 111 n n PG O2G CTP sing 112 n n PG O3G CTP sing 113 n n O2G HOG2 CTP sing 114 n n O3G HOG3 CTP sing 115 n n # _atom_sites.entry_id 8SBR _atom_sites.fract_transf_matrix[1][1] 0.006123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLA A 1 601 601 MLA MLA . D 3 CTP A 1 602 701 CTP CTP . E 3 CTP A 1 603 701 CTP CTP . F 2 MLA B 1 601 601 MLA MLA . G 4 HOH A 1 701 106 HOH HOH . G 4 HOH A 2 702 53 HOH HOH . G 4 HOH A 3 703 20 HOH HOH . G 4 HOH A 4 704 1 HOH HOH . G 4 HOH A 5 705 129 HOH HOH . G 4 HOH A 6 706 24 HOH HOH . G 4 HOH A 7 707 81 HOH HOH . G 4 HOH A 8 708 3 HOH HOH . G 4 HOH A 9 709 39 HOH HOH . G 4 HOH A 10 710 43 HOH HOH . G 4 HOH A 11 711 25 HOH HOH . G 4 HOH A 12 712 21 HOH HOH . G 4 HOH A 13 713 6 HOH HOH . G 4 HOH A 14 714 51 HOH HOH . G 4 HOH A 15 715 31 HOH HOH . G 4 HOH A 16 716 37 HOH HOH . G 4 HOH A 17 717 103 HOH HOH . G 4 HOH A 18 718 74 HOH HOH . G 4 HOH A 19 719 41 HOH HOH . G 4 HOH A 20 720 36 HOH HOH . G 4 HOH A 21 721 9 HOH HOH . G 4 HOH A 22 722 52 HOH HOH . G 4 HOH A 23 723 15 HOH HOH . G 4 HOH A 24 724 125 HOH HOH . G 4 HOH A 25 725 58 HOH HOH . G 4 HOH A 26 726 105 HOH HOH . G 4 HOH A 27 727 91 HOH HOH . G 4 HOH A 28 728 17 HOH HOH . G 4 HOH A 29 729 99 HOH HOH . G 4 HOH A 30 730 47 HOH HOH . G 4 HOH A 31 731 135 HOH HOH . G 4 HOH A 32 732 22 HOH HOH . G 4 HOH A 33 733 38 HOH HOH . G 4 HOH A 34 734 18 HOH HOH . G 4 HOH A 35 735 13 HOH HOH . G 4 HOH A 36 736 50 HOH HOH . G 4 HOH A 37 737 56 HOH HOH . G 4 HOH A 38 738 19 HOH HOH . G 4 HOH A 39 739 108 HOH HOH . G 4 HOH A 40 740 32 HOH HOH . G 4 HOH A 41 741 86 HOH HOH . G 4 HOH A 42 742 27 HOH HOH . G 4 HOH A 43 743 82 HOH HOH . G 4 HOH A 44 744 70 HOH HOH . G 4 HOH A 45 745 110 HOH HOH . G 4 HOH A 46 746 40 HOH HOH . G 4 HOH A 47 747 102 HOH HOH . G 4 HOH A 48 748 83 HOH HOH . G 4 HOH A 49 749 122 HOH HOH . G 4 HOH A 50 750 23 HOH HOH . G 4 HOH A 51 751 112 HOH HOH . G 4 HOH A 52 752 14 HOH HOH . G 4 HOH A 53 753 116 HOH HOH . G 4 HOH A 54 754 97 HOH HOH . G 4 HOH A 55 755 72 HOH HOH . G 4 HOH A 56 756 101 HOH HOH . G 4 HOH A 57 757 121 HOH HOH . G 4 HOH A 58 758 59 HOH HOH . G 4 HOH A 59 759 132 HOH HOH . G 4 HOH A 60 760 111 HOH HOH . G 4 HOH A 61 761 95 HOH HOH . G 4 HOH A 62 762 79 HOH HOH . G 4 HOH A 63 763 100 HOH HOH . G 4 HOH A 64 764 138 HOH HOH . G 4 HOH A 65 765 134 HOH HOH . G 4 HOH A 66 766 71 HOH HOH . G 4 HOH A 67 767 11 HOH HOH . G 4 HOH A 68 768 124 HOH HOH . G 4 HOH A 69 769 93 HOH HOH . G 4 HOH A 70 770 114 HOH HOH . G 4 HOH A 71 771 45 HOH HOH . G 4 HOH A 72 772 94 HOH HOH . H 4 HOH B 1 701 12 HOH HOH . H 4 HOH B 2 702 78 HOH HOH . H 4 HOH B 3 703 2 HOH HOH . H 4 HOH B 4 704 109 HOH HOH . H 4 HOH B 5 705 126 HOH HOH . H 4 HOH B 6 706 29 HOH HOH . H 4 HOH B 7 707 88 HOH HOH . H 4 HOH B 8 708 4 HOH HOH . H 4 HOH B 9 709 55 HOH HOH . H 4 HOH B 10 710 54 HOH HOH . H 4 HOH B 11 711 85 HOH HOH . H 4 HOH B 12 712 127 HOH HOH . H 4 HOH B 13 713 73 HOH HOH . H 4 HOH B 14 714 35 HOH HOH . H 4 HOH B 15 715 92 HOH HOH . H 4 HOH B 16 716 5 HOH HOH . H 4 HOH B 17 717 8 HOH HOH . H 4 HOH B 18 718 104 HOH HOH . H 4 HOH B 19 719 7 HOH HOH . H 4 HOH B 20 720 96 HOH HOH . H 4 HOH B 21 721 44 HOH HOH . H 4 HOH B 22 722 28 HOH HOH . H 4 HOH B 23 723 65 HOH HOH . H 4 HOH B 24 724 34 HOH HOH . H 4 HOH B 25 725 48 HOH HOH . H 4 HOH B 26 726 76 HOH HOH . H 4 HOH B 27 727 119 HOH HOH . H 4 HOH B 28 728 33 HOH HOH . H 4 HOH B 29 729 61 HOH HOH . H 4 HOH B 30 730 46 HOH HOH . H 4 HOH B 31 731 42 HOH HOH . H 4 HOH B 32 732 64 HOH HOH . H 4 HOH B 33 733 84 HOH HOH . H 4 HOH B 34 734 26 HOH HOH . H 4 HOH B 35 735 118 HOH HOH . H 4 HOH B 36 736 107 HOH HOH . H 4 HOH B 37 737 128 HOH HOH . H 4 HOH B 38 738 80 HOH HOH . H 4 HOH B 39 739 69 HOH HOH . H 4 HOH B 40 740 98 HOH HOH . H 4 HOH B 41 741 68 HOH HOH . H 4 HOH B 42 742 117 HOH HOH . H 4 HOH B 43 743 16 HOH HOH . H 4 HOH B 44 744 115 HOH HOH . H 4 HOH B 45 745 57 HOH HOH . H 4 HOH B 46 746 75 HOH HOH . H 4 HOH B 47 747 137 HOH HOH . H 4 HOH B 48 748 77 HOH HOH . H 4 HOH B 49 749 123 HOH HOH . H 4 HOH B 50 750 60 HOH HOH . H 4 HOH B 51 751 87 HOH HOH . H 4 HOH B 52 752 10 HOH HOH . H 4 HOH B 53 753 131 HOH HOH . H 4 HOH B 54 754 90 HOH HOH . H 4 HOH B 55 755 66 HOH HOH . H 4 HOH B 56 756 49 HOH HOH . H 4 HOH B 57 757 67 HOH HOH . H 4 HOH B 58 758 63 HOH HOH . H 4 HOH B 59 759 133 HOH HOH . H 4 HOH B 60 760 113 HOH HOH . H 4 HOH B 61 761 30 HOH HOH . H 4 HOH B 62 762 120 HOH HOH . H 4 HOH B 63 763 130 HOH HOH . H 4 HOH B 64 764 136 HOH HOH . H 4 HOH B 65 765 62 HOH HOH . H 4 HOH B 66 766 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . E 3 -8.929 3.161 16.043 1 53.55 ? N1 CTP 603 A 1 HETATM 2 C C2 CTP . . . E 3 -7.756 2.559 15.637 1 30.32 ? C2 CTP 603 A 1 HETATM 3 N N3 CTP . . . E 3 -7.126 2.978 14.486 1 47.31 ? N3 CTP 603 A 1 HETATM 4 C C4 CTP . . . E 3 -7.473 4.196 13.941 1 44.36 ? C4 CTP 603 A 1 HETATM 5 C C5 CTP . . . E 3 -8.595 4.863 14.42 1 31.71 ? C5 CTP 603 A 1 HETATM 6 C C6 CTP . . . E 3 -9.409 4.241 15.36 1 36.69 ? C6 CTP 603 A 1 HETATM 7 O O2 CTP . . . E 3 -7.276 1.647 16.304 1 37.89 ? O2 CTP 603 A 1 HETATM 8 N N4 CTP . . . E 3 -6.739 4.723 12.965 1 51.66 ? N4 CTP 603 A 1 HETATM 9 C C1' CTP . . . E 3 -9.764 2.467 17.04 1 52.01 ? C1' CTP 603 A 1 HETATM 10 C C2' CTP . . . E 3 -10.018 3.334 18.262 1 55.55 ? C2' CTP 603 A 1 HETATM 11 O O2' CTP . . . E 3 -9.079 3.057 19.274 1 54.74 ? O2' CTP 603 A 1 HETATM 12 C C3' CTP . . . E 3 -11.409 2.933 18.71 1 60.59 ? C3' CTP 603 A 1 HETATM 13 C C4' CTP . . . E 3 -11.949 2.05 17.595 1 42.79 ? C4' CTP 603 A 1 HETATM 14 O O4' CTP . . . E 3 -11.035 2.135 16.52 1 51.23 ? O4' CTP 603 A 1 HETATM 15 O O3' CTP . . . E 3 -11.346 2.199 19.91 1 35.06 ? O3' CTP 603 A 1 HETATM 16 C C5' CTP . . . E 3 -13.342 2.488 17.169 1 36.68 ? C5' CTP 603 A 1 HETATM 17 O O5' CTP . . . E 3 -14.163 1.351 17.021 1 63.37 ? O5' CTP 603 A 1 HETATM 18 P PA CTP . . . E 3 -15.509 1.482 16.157 1 32.51 ? PA CTP 603 A 1 HETATM 19 O O1A CTP . . . E 3 -15.292 0.9 14.782 1 40.74 ? O1A CTP 603 A 1 HETATM 20 O O2A CTP . . . E 3 -16.67 0.821 16.86 1 66.97 ? O2A CTP 603 A 1 HETATM 21 O O3A CTP . . . E 3 -15.687 3.085 16.123 1 63.71 ? O3A CTP 603 A 1 HETATM 22 P PB CTP . . . E 3 -16.095 3.911 14.805 1 32.11 ? PB CTP 603 A 1 HETATM 23 O O1B CTP . . . E 3 -14.832 4.295 14.073 1 44.92 ? O1B CTP 603 A 1 HETATM 24 O O2B CTP . . . E 3 -16.899 5.128 15.197 1 62.32 ? O2B CTP 603 A 1 HETATM 25 O O3B CTP . . . E 3 -16.959 2.857 13.943 1 62.66 ? O3B CTP 603 A 1 HETATM 26 P PG CTP . . . E 3 -18.18 3.267 12.974 1 39.49 ? PG CTP 603 A 1 HETATM 27 O O1G CTP . . . E 3 -18.325 4.77 12.913 1 64.1 ? O1G CTP 603 A 1 HETATM 28 O O2G CTP . . . E 3 -17.964 2.71 11.589 1 49.74 ? O2G CTP 603 A 1 HETATM 29 O O3G CTP . . . E 3 -19.439 2.685 13.564 1 60.91 ? O3G CTP 603 A 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #