data_8SBY # _model_server_result.job_id 1Z2qnDj9slZLKPvBKYhTdg _model_server_result.datetime_utc '2024-12-27 13:31:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sby # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8SBY # _exptl.entry_id 8SBY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8SBY _cell.length_a 126.312 _cell.length_b 126.312 _cell.length_c 105.65 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SBY _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,P 1 1 B,H,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 8SBY _atom_sites.fract_transf_matrix[1][1] 0.007917 _atom_sites.fract_transf_matrix[1][2] 0.004571 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 301 301 NAD NAD . D 3 SO4 A 1 302 1 SO4 SO4 . E 3 SO4 A 1 303 3 SO4 SO4 . F 3 SO4 A 1 304 5 SO4 SO4 . G 3 SO4 A 1 305 7 SO4 SO4 . H 4 CL B 1 301 1 CL CL . I 4 CL B 1 302 2 CL CL . J 2 NAD B 1 303 302 NAD NAD . K 3 SO4 B 1 304 2 SO4 SO4 . L 3 SO4 B 1 305 4 SO4 SO4 . M 3 SO4 B 1 306 6 SO4 SO4 . N 3 SO4 B 1 307 8 SO4 SO4 . O 3 SO4 B 1 308 9 SO4 SO4 . P 5 HOH A 1 401 50 HOH HOH . P 5 HOH A 2 402 43 HOH HOH . P 5 HOH A 3 403 39 HOH HOH . P 5 HOH A 4 404 24 HOH HOH . P 5 HOH A 5 405 25 HOH HOH . P 5 HOH A 6 406 17 HOH HOH . P 5 HOH A 7 407 8 HOH HOH . P 5 HOH A 8 408 20 HOH HOH . P 5 HOH A 9 409 35 HOH HOH . P 5 HOH A 10 410 33 HOH HOH . P 5 HOH A 11 411 42 HOH HOH . P 5 HOH A 12 412 2 HOH HOH . P 5 HOH A 13 413 19 HOH HOH . P 5 HOH A 14 414 27 HOH HOH . P 5 HOH A 15 415 45 HOH HOH . P 5 HOH A 16 416 5 HOH HOH . P 5 HOH A 17 417 31 HOH HOH . P 5 HOH A 18 418 34 HOH HOH . P 5 HOH A 19 419 32 HOH HOH . P 5 HOH A 20 420 37 HOH HOH . P 5 HOH A 21 421 36 HOH HOH . P 5 HOH A 22 422 11 HOH HOH . P 5 HOH A 23 423 46 HOH HOH . P 5 HOH A 24 424 18 HOH HOH . Q 5 HOH B 1 401 52 HOH HOH . Q 5 HOH B 2 402 47 HOH HOH . Q 5 HOH B 3 403 49 HOH HOH . Q 5 HOH B 4 404 41 HOH HOH . Q 5 HOH B 5 405 15 HOH HOH . Q 5 HOH B 6 406 21 HOH HOH . Q 5 HOH B 7 407 26 HOH HOH . Q 5 HOH B 8 408 10 HOH HOH . Q 5 HOH B 9 409 29 HOH HOH . Q 5 HOH B 10 410 9 HOH HOH . Q 5 HOH B 11 411 28 HOH HOH . Q 5 HOH B 12 412 40 HOH HOH . Q 5 HOH B 13 413 4 HOH HOH . Q 5 HOH B 14 414 48 HOH HOH . Q 5 HOH B 15 415 1 HOH HOH . Q 5 HOH B 16 416 30 HOH HOH . Q 5 HOH B 17 417 7 HOH HOH . Q 5 HOH B 18 418 22 HOH HOH . Q 5 HOH B 19 419 3 HOH HOH . Q 5 HOH B 20 420 13 HOH HOH . Q 5 HOH B 21 421 6 HOH HOH . Q 5 HOH B 22 422 16 HOH HOH . Q 5 HOH B 23 423 44 HOH HOH . Q 5 HOH B 24 424 12 HOH HOH . Q 5 HOH B 25 425 51 HOH HOH . Q 5 HOH B 26 426 14 HOH HOH . Q 5 HOH B 27 427 38 HOH HOH . Q 5 HOH B 28 428 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 -3.162 58.421 22.639 1 95.44 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . C 2 -3.531 57.407 23.675 1 115.9 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . C 2 -2.095 59.436 22.863 1 102.63 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . C 2 -4.513 59.214 22.165 1 101.54 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . C 2 -5.619 58.519 21.638 1 92.01 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . C 2 -6.912 59.216 22.044 1 81.4 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . C 2 -7.987 58.293 21.794 1 84.64 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . C 2 -6.991 59.615 23.517 1 82.22 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . C 2 -7.298 60.978 23.618 1 87.27 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . C 2 -8.181 58.811 24.018 1 83.95 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . C 2 -8.938 59.465 24.988 1 73.62 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . C 2 -8.985 58.55 22.724 1 80.72 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . C 2 -9.924 57.495 22.996 1 77.24 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . C 2 -9.633 56.288 23.585 1 68.05 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . C 2 -10.673 55.549 23.783 1 67.69 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . C 2 -11.731 56.286 23.308 1 73 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . C 2 -13.119 56.041 23.234 1 68.08 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . C 2 -13.675 54.905 23.659 1 65.39 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . C 2 -13.907 57.001 22.723 1 63.92 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . C 2 -13.366 58.133 22.308 1 66.02 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . C 2 -12.08 58.48 22.325 1 74.73 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . C 2 -11.296 57.52 22.833 1 77.09 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . C 2 -2.874 57.567 21.253 1 119.97 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . C 2 -2.17 58.035 19.848 1 83.69 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . C 2 -0.805 57.418 19.787 1 92.91 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . C 2 -2.42 59.452 19.475 1 106.68 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . C 2 -3.103 57.131 18.885 1 100.82 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . C 2 -3.953 57.735 17.942 1 93.57 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . C 2 -4.231 56.713 16.875 1 83.79 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . C 2 -3.023 56.199 16.26 1 89.21 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . C 2 -4.918 55.518 17.538 1 84.82 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . C 2 -5.937 55.076 16.68 1 80.47 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . C 2 -3.732 54.535 17.701 1 85.3 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . C 2 -4.13 53.207 17.871 1 78.77 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . C 2 -2.923 54.817 16.41 1 88.43 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . C 2 -1.483 54.338 16.435 1 83.99 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . C 2 -0.521 54.926 17.179 1 89.88 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . C 2 0.789 54.444 17.171 1 85.79 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . C 2 1.907 55.063 17.991 1 91.14 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . C 2 3.074 54.703 17.784 1 89.73 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . C 2 1.538 55.969 18.904 1 91.15 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . C 2 1.109 53.339 16.375 1 78.96 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . C 2 0.121 52.746 15.614 1 69.32 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . C 2 -1.164 53.269 15.662 1 74.71 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #