data_8SBY
#
_model_server_result.job_id            8DVI8vjriGIXtkvmmyonRA 
_model_server_result.datetime_utc      '2024-12-27 12:35:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sby 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":303}' 
#
_entry.id    8SBY 
#
_exptl.entry_id    8SBY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8SBY 
_cell.length_a            126.312 
_cell.length_b            126.312 
_cell.length_c            105.65 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SBY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,P 1 1 
B,H,I,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     8SBY 
_atom_sites.fract_transf_matrix[1][1]    0.007917 
_atom_sites.fract_transf_matrix[1][2]    0.004571 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009142 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009465 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 301 301 NAD NAD . 
D 3 SO4 A 1 302 1 SO4 SO4 . 
E 3 SO4 A 1 303 3 SO4 SO4 . 
F 3 SO4 A 1 304 5 SO4 SO4 . 
G 3 SO4 A 1 305 7 SO4 SO4 . 
H 4 CL B 1 301 1 CL CL . 
I 4 CL B 1 302 2 CL CL . 
J 2 NAD B 1 303 302 NAD NAD . 
K 3 SO4 B 1 304 2 SO4 SO4 . 
L 3 SO4 B 1 305 4 SO4 SO4 . 
M 3 SO4 B 1 306 6 SO4 SO4 . 
N 3 SO4 B 1 307 8 SO4 SO4 . 
O 3 SO4 B 1 308 9 SO4 SO4 . 
P 5 HOH A 1 401 50 HOH HOH . 
P 5 HOH A 2 402 43 HOH HOH . 
P 5 HOH A 3 403 39 HOH HOH . 
P 5 HOH A 4 404 24 HOH HOH . 
P 5 HOH A 5 405 25 HOH HOH . 
P 5 HOH A 6 406 17 HOH HOH . 
P 5 HOH A 7 407 8 HOH HOH . 
P 5 HOH A 8 408 20 HOH HOH . 
P 5 HOH A 9 409 35 HOH HOH . 
P 5 HOH A 10 410 33 HOH HOH . 
P 5 HOH A 11 411 42 HOH HOH . 
P 5 HOH A 12 412 2 HOH HOH . 
P 5 HOH A 13 413 19 HOH HOH . 
P 5 HOH A 14 414 27 HOH HOH . 
P 5 HOH A 15 415 45 HOH HOH . 
P 5 HOH A 16 416 5 HOH HOH . 
P 5 HOH A 17 417 31 HOH HOH . 
P 5 HOH A 18 418 34 HOH HOH . 
P 5 HOH A 19 419 32 HOH HOH . 
P 5 HOH A 20 420 37 HOH HOH . 
P 5 HOH A 21 421 36 HOH HOH . 
P 5 HOH A 22 422 11 HOH HOH . 
P 5 HOH A 23 423 46 HOH HOH . 
P 5 HOH A 24 424 18 HOH HOH . 
Q 5 HOH B 1 401 52 HOH HOH . 
Q 5 HOH B 2 402 47 HOH HOH . 
Q 5 HOH B 3 403 49 HOH HOH . 
Q 5 HOH B 4 404 41 HOH HOH . 
Q 5 HOH B 5 405 15 HOH HOH . 
Q 5 HOH B 6 406 21 HOH HOH . 
Q 5 HOH B 7 407 26 HOH HOH . 
Q 5 HOH B 8 408 10 HOH HOH . 
Q 5 HOH B 9 409 29 HOH HOH . 
Q 5 HOH B 10 410 9 HOH HOH . 
Q 5 HOH B 11 411 28 HOH HOH . 
Q 5 HOH B 12 412 40 HOH HOH . 
Q 5 HOH B 13 413 4 HOH HOH . 
Q 5 HOH B 14 414 48 HOH HOH . 
Q 5 HOH B 15 415 1 HOH HOH . 
Q 5 HOH B 16 416 30 HOH HOH . 
Q 5 HOH B 17 417 7 HOH HOH . 
Q 5 HOH B 18 418 22 HOH HOH . 
Q 5 HOH B 19 419 3 HOH HOH . 
Q 5 HOH B 20 420 13 HOH HOH . 
Q 5 HOH B 21 421 6 HOH HOH . 
Q 5 HOH B 22 422 16 HOH HOH . 
Q 5 HOH B 23 423 44 HOH HOH . 
Q 5 HOH B 24 424 12 HOH HOH . 
Q 5 HOH B 25 425 51 HOH HOH . 
Q 5 HOH B 26 426 14 HOH HOH . 
Q 5 HOH B 27 427 38 HOH HOH . 
Q 5 HOH B 28 428 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . J 2 -21.361 26.104 7.872 1 67.89 ? PA NAD 303 B 1 
HETATM 2 O O1A NAD . . . J 2 -22.374 27.087 8.371 1 79.36 ? O1A NAD 303 B 1 
HETATM 3 O O2A NAD . . . J 2 -21.744 25.05 6.885 1 82.29 ? O2A NAD 303 B 1 
HETATM 4 O O5B NAD . . . J 2 -20.631 25.391 9.14 1 72.96 ? O5B NAD 303 B 1 
HETATM 5 C C5B NAD . . . J 2 -19.759 26.08 9.999 1 70.63 ? C5B NAD 303 B 1 
HETATM 6 C C4B NAD . . . J 2 -19.741 25.389 11.354 1 71.83 ? C4B NAD 303 B 1 
HETATM 7 O O4B NAD . . . J 2 -19.367 26.353 12.363 1 67.97 ? O4B NAD 303 B 1 
HETATM 8 C C3B NAD . . . J 2 -21.113 24.814 11.755 1 74.56 ? C3B NAD 303 B 1 
HETATM 9 O O3B NAD . . . J 2 -20.948 23.515 12.29 1 63.66 ? O3B NAD 303 B 1 
HETATM 10 C C2B NAD . . . J 2 -21.546 25.803 12.843 1 74.48 ? C2B NAD 303 B 1 
HETATM 11 O O2B NAD . . . J 2 -22.493 25.264 13.705 1 63.37 ? O2B NAD 303 B 1 
HETATM 12 C C1B NAD . . . J 2 -20.171 26.103 13.487 1 68.23 ? C1B NAD 303 B 1 
HETATM 13 N N9A NAD . . . J 2 -20.251 27.126 14.502 1 64.89 ? N9A NAD 303 B 1 
HETATM 14 C C8A NAD . . . J 2 -20.791 28.379 14.424 1 66.42 ? C8A NAD 303 B 1 
HETATM 15 N N7A NAD . . . J 2 -20.75 29.056 15.536 1 64 ? N7A NAD 303 B 1 
HETATM 16 C C5A NAD . . . J 2 -20.123 28.214 16.421 1 67.96 ? C5A NAD 303 B 1 
HETATM 17 C C6A NAD . . . J 2 -19.767 28.327 17.789 1 60.61 ? C6A NAD 303 B 1 
HETATM 18 N N6A NAD . . . J 2 -19.999 29.402 18.514 1 63.63 ? N6A NAD 303 B 1 
HETATM 19 N N1A NAD . . . J 2 -19.167 27.296 18.377 1 58.56 ? N1A NAD 303 B 1 
HETATM 20 C C2A NAD . . . J 2 -18.941 26.196 17.652 1 60.08 ? C2A NAD 303 B 1 
HETATM 21 N N3A NAD . . . J 2 -19.231 25.961 16.375 1 56.38 ? N3A NAD 303 B 1 
HETATM 22 C C4A NAD . . . J 2 -19.826 27.001 15.803 1 65.1 ? C4A NAD 303 B 1 
HETATM 23 O O3 NAD . . . J 2 -20.113 26.974 7.221 1 80.05 ? O3 NAD 303 B 1 
HETATM 24 P PN NAD . . . J 2 -18.729 26.407 6.542 1 68.72 ? PN NAD 303 B 1 
HETATM 25 O O1N NAD . . . J 2 -18.698 26.882 5.124 1 76.89 ? O1N NAD 303 B 1 
HETATM 26 O O2N NAD . . . J 2 -18.503 24.965 6.829 1 73.73 ? O2N NAD 303 B 1 
HETATM 27 O O5D NAD . . . J 2 -17.742 27.37 7.447 1 77.53 ? O5D NAD 303 B 1 
HETATM 28 C C5D NAD . . . J 2 -16.424 27.05 7.881 1 72.22 ? C5D NAD 303 B 1 
HETATM 29 C C4D NAD . . . J 2 -15.51 28.254 7.774 1 72.25 ? C4D NAD 303 B 1 
HETATM 30 O O4D NAD . . . J 2 -15.31 28.665 6.387 1 70.8 ? O4D NAD 303 B 1 
HETATM 31 C C3D NAD . . . J 2 -16.086 29.473 8.514 1 73.57 ? C3D NAD 303 B 1 
HETATM 32 O O3D NAD . . . J 2 -15.064 30.116 9.244 1 67.45 ? O3D NAD 303 B 1 
HETATM 33 C C2D NAD . . . J 2 -16.613 30.29 7.318 1 72.49 ? C2D NAD 303 B 1 
HETATM 34 O O2D NAD . . . J 2 -16.866 31.616 7.676 1 69.5 ? O2D NAD 303 B 1 
HETATM 35 C C1D NAD . . . J 2 -15.514 30.025 6.248 1 69.43 ? C1D NAD 303 B 1 
HETATM 36 N N1N NAD . . . J 2 -15.891 30.399 4.835 1 76.07 ? N1N NAD 303 B 1 
HETATM 37 C C2N NAD . . . J 2 -16.852 29.767 4.104 1 71.33 ? C2N NAD 303 B 1 
HETATM 38 C C3N NAD . . . J 2 -17.168 30.171 2.797 1 78.54 ? C3N NAD 303 B 1 
HETATM 39 C C7N NAD . . . J 2 -18.268 29.479 1.979 1 83.91 ? C7N NAD 303 B 1 
HETATM 40 O O7N NAD . . . J 2 -18.689 29.937 0.914 1 74.6 ? O7N NAD 303 B 1 
HETATM 41 N N7N NAD . . . J 2 -18.78 28.372 2.516 1 85.19 ? N7N NAD 303 B 1 
HETATM 42 C C4N NAD . . . J 2 -16.472 31.263 2.249 1 76.24 ? C4N NAD 303 B 1 
HETATM 43 C C5N NAD . . . J 2 -15.501 31.913 3.006 1 71.01 ? C5N NAD 303 B 1 
HETATM 44 C C6N NAD . . . J 2 -15.222 31.451 4.291 1 72.63 ? C6N NAD 303 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#