data_8SD2 # _model_server_result.job_id r2ZNqppACjD0D6dN80_EmQ _model_server_result.datetime_utc '2024-11-24 03:23:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 8SD2 # _exptl.entry_id 8SD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.973 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(S~6~S)-N-{3-chloro-4-[(2S)-2-phenylmorpholine-4-carbonyl]phenyl}-5,7-dihydro-6H-pyrrolo[3,4-b]pyridine-6-sulfonimidoyl fluoride' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SD2 _cell.length_a 166.638 _cell.length_b 166.638 _cell.length_c 166.638 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG C 1 NAG 3 n C NAG 2 C 2 NAG C 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 43 A CYS 52 1_555 A SG CYS 275 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 A SG CYS 56 A CYS 64 1_555 A SG CYS 68 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 91 A CYS 97 1_555 A SG CYS 136 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf5 A SG CYS 279 A CYS 281 1_555 A SG CYS 303 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 A ND2 ASN 12 A ASN 21 1_555 E C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 24 A ASN 33 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 A ND2 ASN 287 A ASN 289 1_555 D C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? # _chem_comp.formula 'C24 H22 Cl F N4 O3 S' _chem_comp.formula_weight 500.973 _chem_comp.id FIE _chem_comp.mon_nstd_flag . _chem_comp.name '(S~6~S)-N-{3-chloro-4-[(2S)-2-phenylmorpholine-4-carbonyl]phenyl}-5,7-dihydro-6H-pyrrolo[3,4-b]pyridine-6-sulfonimidoyl fluoride' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 N4 FIE doub 83 n y C22 C23 FIE sing 84 n y N4 C19 FIE sing 85 n y C23 C24 FIE doub 86 n y C19 C18 FIE sing 87 n n C19 C20 FIE doub 88 n y C18 N3 FIE sing 89 n n C24 C20 FIE sing 90 n y C20 C21 FIE sing 91 n n N3 C21 FIE sing 92 n n N3 S1 FIE sing 93 n n O3 S1 FIE doub 94 n n F1 S1 FIE sing 95 n n S1 N2 FIE doub 96 n n N2 C15 FIE sing 97 n n C15 C14 FIE doub 98 n y C15 C16 FIE sing 99 n y C14 C13 FIE sing 100 n y C16 C17 FIE doub 101 n y C13 CL1 FIE sing 102 n n C13 C12 FIE doub 103 n y C8 C9 FIE sing 104 n n C8 O1 FIE sing 105 n n C17 C12 FIE sing 106 n y C12 C11 FIE sing 107 n n C9 N1 FIE sing 108 n n O1 C7 FIE sing 109 n n N1 C11 FIE sing 110 n n N1 C10 FIE sing 111 n n C11 O2 FIE doub 112 n n C7 C10 FIE sing 113 n n C7 C3 FIE sing 114 n n C3 C2 FIE doub 115 n y C3 C4 FIE sing 116 n y C2 C1 FIE sing 117 n y C4 C5 FIE doub 118 n y C1 C6 FIE doub 119 n y C5 C6 FIE sing 120 n y C1 H1 FIE sing 121 n n C2 H2 FIE sing 122 n n C4 H3 FIE sing 123 n n C5 H4 FIE sing 124 n n C6 H5 FIE sing 125 n n C7 H6 FIE sing 126 n n C8 H7 FIE sing 127 n n C8 H8 FIE sing 128 n n C9 H9 FIE sing 129 n n C9 H10 FIE sing 130 n n C10 H11 FIE sing 131 n n C10 H12 FIE sing 132 n n C14 H13 FIE sing 133 n n C16 H14 FIE sing 134 n n C17 H15 FIE sing 135 n n C18 H18 FIE sing 136 n n C18 H19 FIE sing 137 n n C21 H20 FIE sing 138 n n C21 H21 FIE sing 139 n n C22 H22 FIE sing 140 n n C23 H23 FIE sing 141 n n C24 H24 FIE sing 142 n n # _atom_sites.entry_id 8SD2 _atom_sites.fract_transf_matrix[1][1] 0.006001 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 401 326 NAG NAG . E 4 NAG A 1 402 328 NAG NAG . F 5 NO3 A 1 403 331 NO3 NO3 . G 6 FIE B 1 201 1 FIE FIE . H 7 HOH A 1 501 16 HOH HOH . H 7 HOH A 2 502 2 HOH HOH . H 7 HOH A 3 503 31 HOH HOH . H 7 HOH A 4 504 33 HOH HOH . H 7 HOH A 5 505 24 HOH HOH . H 7 HOH A 6 506 21 HOH HOH . H 7 HOH A 7 507 6 HOH HOH . H 7 HOH A 8 508 37 HOH HOH . H 7 HOH A 9 509 13 HOH HOH . H 7 HOH A 10 510 18 HOH HOH . H 7 HOH A 11 511 20 HOH HOH . H 7 HOH A 12 512 39 HOH HOH . H 7 HOH A 13 513 4 HOH HOH . H 7 HOH A 14 514 25 HOH HOH . H 7 HOH A 15 515 28 HOH HOH . H 7 HOH A 16 516 7 HOH HOH . H 7 HOH A 17 517 38 HOH HOH . H 7 HOH A 18 518 1 HOH HOH . H 7 HOH A 19 519 10 HOH HOH . H 7 HOH A 20 520 34 HOH HOH . H 7 HOH A 21 521 40 HOH HOH . H 7 HOH A 22 522 5 HOH HOH . H 7 HOH A 23 523 8 HOH HOH . H 7 HOH A 24 524 26 HOH HOH . H 7 HOH A 25 525 22 HOH HOH . H 7 HOH A 26 526 9 HOH HOH . H 7 HOH A 27 527 29 HOH HOH . H 7 HOH A 28 528 11 HOH HOH . H 7 HOH A 29 529 14 HOH HOH . H 7 HOH A 30 530 32 HOH HOH . H 7 HOH A 31 531 17 HOH HOH . H 7 HOH A 32 532 15 HOH HOH . H 7 HOH A 33 533 30 HOH HOH . H 7 HOH A 34 534 19 HOH HOH . H 7 HOH A 35 535 27 HOH HOH . H 7 HOH A 36 536 3 HOH HOH . H 7 HOH A 37 537 41 HOH HOH . H 7 HOH A 38 538 12 HOH HOH . I 7 HOH B 1 301 35 HOH HOH . I 7 HOH B 2 302 36 HOH HOH . I 7 HOH B 3 303 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FIE . . . G 6 -15.604 18.856 -2.078 1 106.94 ? C1 FIE 201 B 1 HETATM 2 C C2 FIE . . . G 6 -15.716 18.001 -3.171 1 112.93 ? C2 FIE 201 B 1 HETATM 3 C C3 FIE . . . G 6 -14.614 17.234 -3.573 1 120.18 ? C3 FIE 201 B 1 HETATM 4 C C4 FIE . . . G 6 -13.404 17.34 -2.887 1 122.49 ? C4 FIE 201 B 1 HETATM 5 C C5 FIE . . . G 6 -13.298 18.189 -1.797 1 117.75 ? C5 FIE 201 B 1 HETATM 6 C C6 FIE . . . G 6 -14.394 18.949 -1.389 1 112.64 ? C6 FIE 201 B 1 HETATM 7 C C7 FIE . . . G 6 -14.704 16.291 -4.728 1 117.99 ? C7 FIE 201 B 1 HETATM 8 O O1 FIE . . . G 6 -14.967 17.053 -5.896 1 116.67 ? O1 FIE 201 B 1 HETATM 9 C C8 FIE . . . G 6 -15.21 16.285 -7.074 1 106.18 ? C8 FIE 201 B 1 HETATM 10 C C9 FIE . . . G 6 -16.405 15.332 -6.877 1 108.94 ? C9 FIE 201 B 1 HETATM 11 N N1 FIE . . . G 6 -16.021 14.563 -5.702 1 114.06 ? N1 FIE 201 B 1 HETATM 12 C C10 FIE . . . G 6 -15.825 15.309 -4.458 1 124.2 ? C10 FIE 201 B 1 HETATM 13 C C11 FIE . . . G 6 -15.85 13.245 -5.69 1 122.94 ? C11 FIE 201 B 1 HETATM 14 O O2 FIE . . . G 6 -15.532 12.688 -4.655 1 127.61 ? O2 FIE 201 B 1 HETATM 15 C C12 FIE . . . G 6 -16.104 12.432 -6.919 1 126.63 ? C12 FIE 201 B 1 HETATM 16 C C13 FIE . . . G 6 -15.137 12.274 -7.891 1 114.28 ? C13 FIE 201 B 1 HETATM 17 C C14 FIE . . . G 6 -15.395 11.496 -9.027 1 118.96 ? C14 FIE 201 B 1 HETATM 18 C C15 FIE . . . G 6 -16.639 10.873 -9.158 1 123.2 ? C15 FIE 201 B 1 HETATM 19 C C16 FIE . . . G 6 -17.607 11.02 -8.167 1 127.07 ? C16 FIE 201 B 1 HETATM 20 C C17 FIE . . . G 6 -17.348 11.794 -7.046 1 126.78 ? C17 FIE 201 B 1 HETATM 21 CL CL1 FIE . . . G 6 -13.634 13.069 -7.656 1 128.2 ? CL1 FIE 201 B 1 HETATM 22 N N2 FIE . . . G 6 -16.985 10.004 -10.251 1 115.42 ? N2 FIE 201 B 1 HETATM 23 S S1 FIE . . . G 6 -16.956 10.604 -11.672 1 128.19 ? S1 FIE 201 B 1 HETATM 24 F F1 FIE . . . G 6 -18.034 11.812 -11.798 1 112.69 ? F1 FIE 201 B 1 HETATM 25 O O3 FIE . . . G 6 -15.647 10.959 -12.204 1 113.76 ? O3 FIE 201 B 1 HETATM 26 N N3 FIE . . . G 6 -17.528 9.318 -12.649 1 131.32 ? N3 FIE 201 B 1 HETATM 27 C C18 FIE . . . G 6 -17.712 9.794 -14.02 1 123.3 ? C18 FIE 201 B 1 HETATM 28 C C19 FIE . . . G 6 -18.989 9.135 -14.428 1 116.01 ? C19 FIE 201 B 1 HETATM 29 C C20 FIE . . . G 6 -19.638 8.629 -13.306 1 115.5 ? C20 FIE 201 B 1 HETATM 30 C C21 FIE . . . G 6 -18.825 8.911 -12.103 1 123.74 ? C21 FIE 201 B 1 HETATM 31 N N4 FIE . . . G 6 -19.472 9.006 -15.698 1 114.51 ? N4 FIE 201 B 1 HETATM 32 C C22 FIE . . . G 6 -20.663 8.357 -15.819 1 110.66 ? C22 FIE 201 B 1 HETATM 33 C C23 FIE . . . G 6 -21.362 7.827 -14.735 1 108.55 ? C23 FIE 201 B 1 HETATM 34 C C24 FIE . . . G 6 -20.852 7.946 -13.443 1 111.21 ? C24 FIE 201 B 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #