data_8SD4 # _model_server_result.job_id OnyhhZcEu-N4pW7kG75tiA _model_server_result.datetime_utc '2024-11-24 10:56:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sd4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8SD4 # _exptl.entry_id 8SD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 529.455 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(S~1~S)-N-{3,5-dichloro-4-[(2S)-2-phenylmorpholine-4-carbonyl]phenyl}-3-[(dimethylamino)methyl]azetidine-1-sulfonimidoyl fluoride' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SD4 _cell.length_a 162.855 _cell.length_b 162.855 _cell.length_c 162.855 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG C 1 NAG 3 n C NAG 2 C 2 NAG C 2 NAG 4 n D NAG 1 D 1 NAG D 1 NAG 4 n D NAG 2 D 2 NAG D 2 NAG 4 n D BMA 3 D 3 BMA D 3 BMA 3 n E NAG 1 E 1 NAG E 1 NAG 3 n E NAG 2 E 2 NAG E 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 43 A CYS 52 1_555 A SG CYS 275 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 56 A CYS 64 1_555 A SG CYS 68 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 A SG CYS 91 A CYS 97 1_555 A SG CYS 136 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 279 A CYS 281 1_555 A SG CYS 303 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 24 A ASN 33 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 287 A ASN 289 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 B ND2 ASN 154 B ASN 154 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale5 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale6 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? # _chem_comp.formula 'C23 H27 Cl2 F N4 O3 S' _chem_comp.formula_weight 529.455 _chem_comp.id ZW4 _chem_comp.mon_nstd_flag . _chem_comp.name '(S~1~S)-N-{3,5-dichloro-4-[(2S)-2-phenylmorpholine-4-carbonyl]phenyl}-3-[(dimethylamino)methyl]azetidine-1-sulfonimidoyl fluoride' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C13 ZW4 sing 430 n n C5 C4 ZW4 doub 431 n y C5 C6 ZW4 sing 432 n y C4 C3 ZW4 sing 433 n y C6 C1 ZW4 doub 434 n y C3 C7 ZW4 sing 435 n n C3 C2 ZW4 doub 436 n y C7 O1 ZW4 sing 437 n n C7 C10 ZW4 sing 438 n n O1 C8 ZW4 sing 439 n n C13 C14 ZW4 doub 440 n y C13 C12 ZW4 sing 441 n y C8 C9 ZW4 sing 442 n n C14 C15 ZW4 sing 443 n y O2 C11 ZW4 doub 444 n n C1 C2 ZW4 sing 445 n y C10 N1 ZW4 sing 446 n n C11 N1 ZW4 sing 447 n n C11 C12 ZW4 sing 448 n n O3 S1 ZW4 doub 449 n n N1 C9 ZW4 sing 450 n n C12 C17 ZW4 doub 451 n y C15 N2 ZW4 sing 452 n n C15 C16 ZW4 doub 453 n y N2 S1 ZW4 doub 454 n n S1 F1 ZW4 sing 455 n n S1 N3 ZW4 sing 456 n n C17 C16 ZW4 sing 457 n y C17 CL2 ZW4 sing 458 n n N3 C19 ZW4 sing 459 n n N3 C18 ZW4 sing 460 n n C19 C20 ZW4 sing 461 n n C18 C20 ZW4 sing 462 n n C20 C21 ZW4 sing 463 n n C21 N4 ZW4 sing 464 n n C23 N4 ZW4 sing 465 n n N4 C22 ZW4 sing 466 n n C1 H1 ZW4 sing 467 n n C2 H2 ZW4 sing 468 n n C4 H4 ZW4 sing 469 n n C5 H5 ZW4 sing 470 n n C6 H6 ZW4 sing 471 n n C7 H7 ZW4 sing 472 n n C8 H8 ZW4 sing 473 n n C8 H9 ZW4 sing 474 n n C9 H10 ZW4 sing 475 n n C9 H11 ZW4 sing 476 n n C10 H12 ZW4 sing 477 n n C10 H13 ZW4 sing 478 n n C14 H14 ZW4 sing 479 n n C16 H15 ZW4 sing 480 n n C18 H17 ZW4 sing 481 n n C18 H18 ZW4 sing 482 n n C19 H19 ZW4 sing 483 n n C19 H20 ZW4 sing 484 n n C20 H21 ZW4 sing 485 n n C21 H22 ZW4 sing 486 n n C21 H23 ZW4 sing 487 n n C22 H25 ZW4 sing 488 n n C22 H26 ZW4 sing 489 n n C22 H27 ZW4 sing 490 n n C23 H28 ZW4 sing 491 n n C23 H29 ZW4 sing 492 n n C23 H30 ZW4 sing 493 n n # _atom_sites.entry_id 8SD4 _atom_sites.fract_transf_matrix[1][1] 0.00614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 ZW4 A 1 401 1 ZW4 FIG . G 6 HOH A 1 501 6 HOH HOH . G 6 HOH A 2 502 10 HOH HOH . G 6 HOH A 3 503 9 HOH HOH . G 6 HOH A 4 504 8 HOH HOH . G 6 HOH A 5 505 5 HOH HOH . G 6 HOH A 6 506 7 HOH HOH . G 6 HOH A 7 507 2 HOH HOH . H 6 HOH B 1 201 1 HOH HOH . H 6 HOH B 2 202 4 HOH HOH . H 6 HOH B 3 203 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZW4 . . . F 5 -39.549 -59.726 -24.665 1 107.25 ? C1 ZW4 401 A 1 HETATM 2 N N1 ZW4 . . . F 5 -35.791 -55.543 -24.418 1 105.01 ? N1 ZW4 401 A 1 HETATM 3 O O1 ZW4 . . . F 5 -35.716 -58.05 -25.528 1 103.09 ? O1 ZW4 401 A 1 HETATM 4 C C2 ZW4 . . . F 5 -38.411 -58.92 -24.652 1 106.35 ? C2 ZW4 401 A 1 HETATM 5 O O2 ZW4 . . . F 5 -36.782 -53.61 -24.909 1 102.84 ? O2 ZW4 401 A 1 HETATM 6 C C3 ZW4 . . . F 5 -38.087 -58.138 -25.761 1 106.23 ? C3 ZW4 401 A 1 HETATM 7 O O3 ZW4 . . . F 5 -28.811 -51.4 -24.441 1 131.17 ? O3 ZW4 401 A 1 HETATM 8 C C4 ZW4 . . . F 5 -38.906 -58.164 -26.88 1 108.18 ? C4 ZW4 401 A 1 HETATM 9 C C5 ZW4 . . . F 5 -40.043 -58.969 -26.892 1 107.83 ? C5 ZW4 401 A 1 HETATM 10 C C6 ZW4 . . . F 5 -40.366 -59.752 -25.789 1 107.33 ? C6 ZW4 401 A 1 HETATM 11 C C7 ZW4 . . . F 5 -36.876 -57.256 -25.76 1 104.66 ? C7 ZW4 401 A 1 HETATM 12 C C8 ZW4 . . . F 5 -34.511 -57.317 -25.262 1 103.33 ? C8 ZW4 401 A 1 HETATM 13 C C9 ZW4 . . . F 5 -34.66 -56.393 -24.034 1 103.82 ? C9 ZW4 401 A 1 HETATM 14 C C10 ZW4 . . . F 5 -37.077 -56.215 -24.653 1 104.15 ? C10 ZW4 401 A 1 HETATM 15 C C11 ZW4 . . . F 5 -35.763 -54.215 -24.586 1 105.33 ? C11 ZW4 401 A 1 HETATM 16 C C12 ZW4 . . . F 5 -34.52 -53.419 -24.324 1 106.79 ? C12 ZW4 401 A 1 HETATM 17 C C13 ZW4 . . . F 5 -33.602 -53.103 -25.331 1 107.88 ? C13 ZW4 401 A 1 HETATM 18 C C14 ZW4 . . . F 5 -32.478 -52.313 -25.058 1 110.24 ? C14 ZW4 401 A 1 HETATM 19 C C15 ZW4 . . . F 5 -32.248 -51.831 -23.761 1 113.45 ? C15 ZW4 401 A 1 HETATM 20 C C16 ZW4 . . . F 5 -33.202 -52.117 -22.769 1 111.36 ? C16 ZW4 401 A 1 HETATM 21 C C17 ZW4 . . . F 5 -34.325 -52.903 -23.032 1 109.89 ? C17 ZW4 401 A 1 HETATM 22 CL CL1 ZW4 . . . F 5 -33.808 -53.685 -26.935 1 109.15 ? CL1 ZW4 401 A 1 HETATM 23 N N2 ZW4 . . . F 5 -31.114 -50.951 -23.403 1 122.08 ? N2 ZW4 401 A 1 HETATM 24 S S1 ZW4 . . . F 5 -29.601 -51.373 -23.195 1 132.68 ? S1 ZW4 401 A 1 HETATM 25 F F1 ZW4 . . . F 5 -29.604 -52.899 -22.664 1 137.92 ? F1 ZW4 401 A 1 HETATM 26 N N3 ZW4 . . . F 5 -28.788 -50.261 -22.04 1 138.04 ? N3 ZW4 401 A 1 HETATM 27 CL CL2 ZW4 . . . F 5 -35.425 -53.22 -21.724 1 113.74 ? CL2 ZW4 401 A 1 HETATM 28 C C18 ZW4 . . . F 5 -29.344 -49.599 -20.824 1 141.05 ? C18 ZW4 401 A 1 HETATM 29 C C19 ZW4 . . . F 5 -27.53 -50.519 -21.301 1 140.58 ? C19 ZW4 401 A 1 HETATM 30 C C20 ZW4 . . . F 5 -28.122 -49.986 -20.001 1 143.4 ? C20 ZW4 401 A 1 HETATM 31 C C21 ZW4 . . . F 5 -27.349 -48.843 -19.4 1 145.86 ? C21 ZW4 401 A 1 HETATM 32 N N4 ZW4 . . . F 5 -25.957 -49.26 -19.192 1 148.12 ? N4 ZW4 401 A 1 HETATM 33 C C22 ZW4 . . . F 5 -25.806 -49.926 -17.899 1 149.01 ? C22 ZW4 401 A 1 HETATM 34 C C23 ZW4 . . . F 5 -25.02 -48.143 -19.333 1 146.14 ? C23 ZW4 401 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 34 #