data_8SDB # _model_server_result.job_id 4K1cRa6sTBezRyNjyZMl3g _model_server_result.datetime_utc '2025-09-10 01:49:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":803}' # _entry.id 8SDB # _exptl.entry_id 8SDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 7 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8SDB _cell.length_a 146.489 _cell.length_b 146.489 _cell.length_c 294.92 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,H,I,N,O,P,Q 1 1 B,F,J,K,R,S 2 1 C,G,L,M 3 1 D,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 O N N ? 7 P N N ? 7 Q N N ? 7 R N N ? 7 S N N ? 7 T N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 2 4 3 GLC GLC C1 O1 . O4 HO4 . sing 4 ? 2 5 4 GLC GLC C1 O1 . O4 HO4 . sing 5 ? 3 2 1 GLC GLC C1 O1 . O4 HO4 . sing 6 ? 3 3 2 GLC GLC C1 O1 . O4 HO4 . sing 7 ? 3 4 3 GLC GLC C1 O1 . O4 HO4 . sing 8 ? 4 2 1 GLC GLC C1 O1 . O4 HO4 . sing 9 ? 4 3 2 GLC GLC C1 O1 . O4 HO4 . sing 10 ? 5 2 1 GLC GLC C1 O1 . O4 HO4 . sing 11 ? 5 3 2 GLC GLC C1 O1 . O4 HO4 . sing 12 ? 5 4 3 GLC GLC C1 O1 . O4 HO4 . sing 13 ? 5 5 4 GLC GLC C1 O1 . O4 HO4 . sing 14 ? 5 6 5 GLC GLC C1 O1 . O4 HO4 . sing 15 ? 5 7 6 GLC GLC C1 O1 . O4 HO4 . sing 16 ? 6 2 1 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E GLC 1 E 1 GLC E 1 GLC 2 n E GLC 2 E 2 GLC E 2 GLC 2 n E GLC 3 E 3 GLC E 3 GLC 2 n E GLC 4 E 4 GLC E 4 GLC 2 n E GLC 5 E 5 GLC E 5 GLC 2 n F GLC 1 F 1 GLC E 6 GLC 2 n F GLC 2 F 2 GLC E 7 GLC 2 n F GLC 3 F 3 GLC E 8 GLC 2 n F GLC 4 F 4 GLC E 9 GLC 2 n F GLC 5 F 5 GLC E 10 GLC 3 n G GLC 1 G 1 GLC E 41 GLC 3 n G GLC 2 G 2 GLC E 13 GLC 3 n G GLC 3 G 3 GLC E 12 GLC 3 n G GLC 4 G 4 GLC E 11 GLC 2 n H GLC 1 H 1 GLC E 14 GLC 2 n H GLC 2 H 2 GLC E 15 GLC 2 n H GLC 3 H 3 GLC E 16 GLC 2 n H GLC 4 H 4 GLC E 17 GLC 2 n H GLC 5 H 5 GLC E 18 GLC 4 n I GLC 1 I 1 GLC E 20 GLC 4 n I GLC 2 I 2 GLC E 21 GLC 4 n I GLC 3 I 3 GLC E 22 GLC 5 n J GLC 1 J 1 GLC E 25 GLC 5 n J GLC 2 J 2 GLC E 26 GLC 5 n J GLC 3 J 3 GLC E 27 GLC 5 n J GLC 4 J 4 GLC E 28 GLC 5 n J GLC 5 J 5 GLC E 29 GLC 5 n J GLC 6 J 6 GLC E 30 GLC 5 n J GLC 7 J 7 GLC E 31 GLC 6 n K GLC 1 K 1 GLC E 32 GLC 6 n K GLC 2 K 2 GLC E 33 GLC 6 n L GLC 1 L 1 GLC E 35 GLC 6 n L GLC 2 L 2 GLC E 36 GLC 4 n M GLC 1 M 1 GLC E 37 GLC 4 n M GLC 2 M 2 GLC E 38 GLC 4 n M GLC 3 M 3 GLC E 39 GLC 6 n N GLC 1 N 1 GLC E 42 GLC 6 n N GLC 2 N 2 GLC E 43 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E O4 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.552 ? covale ? covale2 E O4 GLC . E GLC 2 1_555 E C1 GLC . E GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.388 ? covale ? covale3 E O4 GLC . E GLC 3 1_555 E C1 GLC . E GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale4 E O4 GLC . E GLC 4 1_555 E C1 GLC . E GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 F O4 GLC . F GLC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 F O4 GLC . F GLC 2 1_555 F C1 GLC . F GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 F O4 GLC . F GLC 3 1_555 F C1 GLC . F GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 F O4 GLC . F GLC 4 1_555 F C1 GLC . F GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 G O4 GLC . G GLC 1 1_555 G C1 GLC . G GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.293 ? covale ? covale10 G O4 GLC . G GLC 2 1_555 G C1 GLC . G GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? covale ? covale11 G O4 GLC . G GLC 3 1_555 G C1 GLC . G GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale12 H O4 GLC . H GLC 1 1_555 H C1 GLC . H GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 H O4 GLC . H GLC 2 1_555 H C1 GLC . H GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale14 H O4 GLC . H GLC 3 1_555 H C1 GLC . H GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale15 H O4 GLC . H GLC 4 1_555 H C1 GLC . H GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale16 I O4 GLC . I GLC 1 1_555 I C1 GLC . I GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale17 I O4 GLC . I GLC 2 1_555 I C1 GLC . I GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 J O4 GLC . J GLC 1 1_555 J C1 GLC . J GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale19 J O4 GLC . J GLC 2 1_555 J C1 GLC . J GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale20 J O4 GLC . J GLC 3 1_555 J C1 GLC . J GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale21 J O4 GLC . J GLC 4 1_555 J C1 GLC . J GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale22 J O4 GLC . J GLC 5 1_555 J C1 GLC . J GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale23 J O4 GLC . J GLC 6 1_555 J C1 GLC . J GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale24 K O4 GLC . K GLC 1 1_555 K C1 GLC . K GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale25 L O4 GLC . L GLC 1 1_555 L C1 GLC . L GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale26 M O4 GLC . M GLC 1 1_555 M C1 GLC . M GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale27 M O4 GLC . M GLC 2 1_555 M C1 GLC . M GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale28 N O4 GLC . N GLC 1 1_555 N C1 GLC . N GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 83 n n C1 O1 GLC sing 84 n n C1 O5 GLC sing 85 n n C1 H1 GLC sing 86 n n C2 C3 GLC sing 87 n n C2 O2 GLC sing 88 n n C2 H2 GLC sing 89 n n C3 C4 GLC sing 90 n n C3 O3 GLC sing 91 n n C3 H3 GLC sing 92 n n C4 C5 GLC sing 93 n n C4 O4 GLC sing 94 n n C4 H4 GLC sing 95 n n C5 C6 GLC sing 96 n n C5 O5 GLC sing 97 n n C5 H5 GLC sing 98 n n C6 O6 GLC sing 99 n n C6 H61 GLC sing 100 n n C6 H62 GLC sing 101 n n O1 HO1 GLC sing 102 n n O2 HO2 GLC sing 103 n n O3 HO3 GLC sing 104 n n O4 HO4 GLC sing 105 n n O6 HO6 GLC sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8SDB _atom_sites.fract_transf_matrix[1][1] 0.006826 _atom_sites.fract_transf_matrix[1][2] 0.003941 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 7 GLC A 1 801 23 GLC GLC . P 7 GLC A 1 802 40 GLC GLC . Q 7 GLC A 1 803 44 GLC GLC . R 7 GLC B 1 801 24 GLC GLC . S 7 GLC B 1 802 34 GLC GLC . T 7 GLC D 1 801 45 GLC GLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . Q 7 99.053 -36.295 -24.594 1 20 ? C1 GLC 803 A 1 HETATM 2 C C2 GLC . . . Q 7 98.634 -37.716 -24.237 1 20 ? C2 GLC 803 A 1 HETATM 3 C C3 GLC . . . Q 7 97.88 -38.369 -25.389 1 20 ? C3 GLC 803 A 1 HETATM 4 C C4 GLC . . . Q 7 96.773 -37.455 -25.902 1 20 ? C4 GLC 803 A 1 HETATM 5 C C5 GLC . . . Q 7 97.3 -36.048 -26.158 1 20 ? C5 GLC 803 A 1 HETATM 6 C C6 GLC . . . Q 7 96.177 -35.116 -26.596 1 20 ? C6 GLC 803 A 1 HETATM 7 O O1 GLC . . . Q 7 99.976 -36.331 -25.689 1 20 ? O1 GLC 803 A 1 HETATM 8 O O2 GLC . . . Q 7 99.796 -38.493 -23.926 1 20 ? O2 GLC 803 A 1 HETATM 9 O O3 GLC . . . Q 7 97.311 -39.606 -24.947 1 20 ? O3 GLC 803 A 1 HETATM 10 O O4 GLC . . . Q 7 96.236 -37.992 -27.117 1 20 ? O4 GLC 803 A 1 HETATM 11 O O5 GLC . . . Q 7 97.902 -35.542 -24.969 1 20 ? O5 GLC 803 A 1 HETATM 12 O O6 GLC . . . Q 7 96.727 -33.854 -26.987 1 20 ? O6 GLC 803 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #