data_8SEP # _model_server_result.job_id jFLTg6WVtRPtKKT4DT5SZg _model_server_result.datetime_utc '2024-10-19 09:42:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sep # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":5101}' # _entry.id 8SEP # _exptl.entry_id 8SEP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SEP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SEP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 230 A CYS 230 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 3170 A CYS 3170 1_555 A SG CYS 3240 A CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 4876 A CYS 4876 1_555 A SG CYS 4882 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 230 B CYS 230 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 B SG CYS 3170 B CYS 3170 1_555 B SG CYS 3240 B CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 B SG CYS 4876 B CYS 4876 1_555 B SG CYS 4882 B CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 C SG CYS 230 C CYS 230 1_555 C SG CYS 253 C CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 C SG CYS 3170 C CYS 3170 1_555 C SG CYS 3240 C CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 C SG CYS 4876 C CYS 4876 1_555 C SG CYS 4882 C CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 D SG CYS 230 D CYS 230 1_555 D SG CYS 253 D CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 D SG CYS 3170 D CYS 3170 1_555 D SG CYS 3240 D CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf12 D SG CYS 4876 D CYS 4876 1_555 D SG CYS 4882 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A SG CYS 4958 A CYS 4958 1_555 J ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 A SG CYS 4961 A CYS 4961 1_555 J ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc3 A NE2 HIS 4978 A HIS 4978 1_555 J ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc4 A ND1 HIS 4983 A HIS 4983 1_555 J ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc5 B SG CYS 4958 B CYS 4958 1_555 L ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc6 B SG CYS 4961 B CYS 4961 1_555 L ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 B NE2 HIS 4978 B HIS 4978 1_555 L ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc8 B ND1 HIS 4983 B HIS 4983 1_555 L ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc9 C SG CYS 4958 C CYS 4958 1_555 N ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc10 C SG CYS 4961 C CYS 4961 1_555 N ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc11 C NE2 HIS 4978 C HIS 4978 1_555 N ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc12 C ND1 HIS 4983 C HIS 4983 1_555 N ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc13 D SG CYS 4958 D CYS 4958 1_555 P ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc14 D SG CYS 4961 D CYS 4961 1_555 P ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc15 D NE2 HIS 4978 D HIS 4978 1_555 P ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc16 D ND1 HIS 4983 D HIS 4983 1_555 P ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8SEP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ADP A 1 5101 5101 ADP ADP . J 4 ZN A 1 5102 5103 ZN ZN . K 3 ADP B 1 5101 5101 ADP ADP . L 4 ZN B 1 5102 5103 ZN ZN . M 3 ADP C 1 5101 5101 ADP ADP . N 4 ZN C 1 5102 5103 ZN ZN . O 3 ADP D 1 5101 5101 ADP ADP . P 4 ZN D 1 5102 5103 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . O 3 265.579 279.611 221.132 1 149.4 ? PB ADP 5101 D 1 HETATM 2 O O1B ADP . . . O 3 266.509 280.616 220.501 1 148.15 ? O1B ADP 5101 D 1 HETATM 3 O O2B ADP . . . O 3 265.88 278.185 220.752 1 148.55 ? O2B ADP 5101 D 1 HETATM 4 O O3B ADP . . . O 3 264.118 279.97 221.024 1 148.61 ? O3B ADP 5101 D 1 HETATM 5 P PA ADP . . . O 3 264.871 279.37 223.886 1 150.97 ? PA ADP 5101 D 1 HETATM 6 O O1A ADP . . . O 3 263.781 280.41 223.858 1 149.24 ? O1A ADP 5101 D 1 HETATM 7 O O2A ADP . . . O 3 265.667 279.148 225.148 1 148.63 ? O2A ADP 5101 D 1 HETATM 8 O O3A ADP . . . O 3 265.912 279.732 222.707 1 149.51 ? O3A ADP 5101 D 1 HETATM 9 O O5' ADP . . . O 3 264.241 277.95 223.471 1 149.41 ? O5' ADP 5101 D 1 HETATM 10 C C5' ADP . . . O 3 265.052 276.783 223.549 1 148.72 ? C5' ADP 5101 D 1 HETATM 11 C C4' ADP . . . O 3 264.542 275.831 224.622 1 148.31 ? C4' ADP 5101 D 1 HETATM 12 O O4' ADP . . . O 3 265.678 275.291 225.293 1 148.29 ? O4' ADP 5101 D 1 HETATM 13 C C3' ADP . . . O 3 263.668 276.418 225.718 1 148.3 ? C3' ADP 5101 D 1 HETATM 14 O O3' ADP . . . O 3 262.33 275.944 225.579 1 148.49 ? O3' ADP 5101 D 1 HETATM 15 C C2' ADP . . . O 3 264.266 275.891 227.004 1 148.21 ? C2' ADP 5101 D 1 HETATM 16 O O2' ADP . . . O 3 263.246 275.33 227.831 1 149.02 ? O2' ADP 5101 D 1 HETATM 17 C C1' ADP . . . O 3 265.211 274.8 226.538 1 148.19 ? C1' ADP 5101 D 1 HETATM 18 N N9 ADP . . . O 3 266.317 274.624 227.501 1 147.78 ? N9 ADP 5101 D 1 HETATM 19 C C8 ADP . . . O 3 266.56 273.523 228.228 1 147.82 ? C8 ADP 5101 D 1 HETATM 20 N N7 ADP . . . O 3 267.655 273.685 229.01 1 147.01 ? N7 ADP 5101 D 1 HETATM 21 C C5 ADP . . . O 3 268.129 274.916 228.772 1 147.04 ? C5 ADP 5101 D 1 HETATM 22 C C6 ADP . . . O 3 269.259 275.726 229.257 1 146.83 ? C6 ADP 5101 D 1 HETATM 23 N N6 ADP . . . O 3 270.114 275.229 230.175 1 146.74 ? N6 ADP 5101 D 1 HETATM 24 N N1 ADP . . . O 3 269.411 276.968 228.76 1 147.19 ? N1 ADP 5101 D 1 HETATM 25 C C2 ADP . . . O 3 268.561 277.468 227.848 1 147.62 ? C2 ADP 5101 D 1 HETATM 26 N N3 ADP . . . O 3 267.513 276.79 227.36 1 147.25 ? N3 ADP 5101 D 1 HETATM 27 C C4 ADP . . . O 3 267.25 275.531 227.775 1 147.28 ? C4 ADP 5101 D 1 # _model_server_stats.io_time_ms 137 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 132 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #