data_8SER
#
_model_server_result.job_id            aXdl1h5hlXYuP6X4DvRb1g 
_model_server_result.datetime_utc      '2024-12-21 17:52:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ser 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":5101}' 
#
_entry.id    8SER 
#
_exptl.entry_id    8SER 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              267.241 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SER 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SER 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 K N N 
? 3 M N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 230 A CYS 230 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 3170 A CYS 3170 1_555 A SG CYS 3240 A CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 4876 A CYS 4876 1_555 A SG CYS 4882 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 230 B CYS 230 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 3170 B CYS 3170 1_555 B SG CYS 3240 B CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 B SG CYS 4876 B CYS 4876 1_555 B SG CYS 4882 B CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 C SG CYS 230 C CYS 230 1_555 C SG CYS 253 C CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 C SG CYS 3170 C CYS 3170 1_555 C SG CYS 3240 C CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 C SG CYS 4876 C CYS 4876 1_555 C SG CYS 4882 C CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 D SG CYS 230 D CYS 230 1_555 D SG CYS 253 D CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 D SG CYS 3170 D CYS 3170 1_555 D SG CYS 3240 D CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf12 D SG CYS 4876 D CYS 4876 1_555 D SG CYS 4882 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A SG CYS 4958 A CYS 4958 1_555 J ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc2 A SG CYS 4961 A CYS 4961 1_555 J ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc3 A NE2 HIS 4978 A HIS 4978 1_555 J ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc4 A ND1 HIS 4983 A HIS 4983 1_555 J ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc5 B SG CYS 4958 B CYS 4958 1_555 L ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc6 B SG CYS 4961 B CYS 4961 1_555 L ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc7 B NE2 HIS 4978 B HIS 4978 1_555 L ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc8 B ND1 HIS 4983 B HIS 4983 1_555 L ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc9 C SG CYS 4958 C CYS 4958 1_555 N ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc10 C SG CYS 4961 C CYS 4961 1_555 N ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc11 C NE2 HIS 4978 C HIS 4978 1_555 N ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc12 C ND1 HIS 4983 C HIS 4983 1_555 N ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc13 D SG CYS 4958 D CYS 4958 1_555 P ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc14 D SG CYS 4961 D CYS 4961 1_555 P ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc15 D NE2 HIS 4978 D HIS 4978 1_555 P ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc16 D ND1 HIS 4983 D HIS 4983 1_555 P ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
#
_chem_comp.formula           'C10 H13 N5 O4' 
_chem_comp.formula_weight    267.241 
_chem_comp.id                ADN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' ADN sing 1 n n 
O5' HO5' ADN sing 2 n n 
C5' C4' ADN sing 3 n n 
C5' "H5'1" ADN sing 4 n n 
C5' "H5'2" ADN sing 5 n n 
C4' O4' ADN sing 6 n n 
C4' C3' ADN sing 7 n n 
C4' H4' ADN sing 8 n n 
O4' C1' ADN sing 9 n n 
C3' O3' ADN sing 10 n n 
C3' C2' ADN sing 11 n n 
C3' H3' ADN sing 12 n n 
O3' HO3' ADN sing 13 n n 
C2' O2' ADN sing 14 n n 
C2' C1' ADN sing 15 n n 
C2' H2' ADN sing 16 n n 
O2' HO2' ADN sing 17 n n 
C1' N9 ADN sing 18 n n 
C1' H1' ADN sing 19 n n 
N9 C8 ADN sing 20 n y 
N9 C4 ADN sing 21 n y 
C8 N7 ADN doub 22 n y 
C8 H8 ADN sing 23 n n 
N7 C5 ADN sing 24 n y 
C5 C6 ADN sing 25 n y 
C5 C4 ADN doub 26 n y 
C6 N6 ADN sing 27 n n 
C6 N1 ADN doub 28 n y 
N6 HN61 ADN sing 29 n n 
N6 HN62 ADN sing 30 n n 
N1 C2 ADN sing 31 n y 
C2 N3 ADN doub 32 n y 
C2 H2 ADN sing 33 n n 
N3 C4 ADN sing 34 n y 
#
_atom_sites.entry_id                     8SER 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ADN A 1 5101 5101 ADN ADN . 
J 4 ZN A 1 5102 5103 ZN ZN . 
K 3 ADN B 1 5101 5101 ADN ADN . 
L 4 ZN B 1 5102 5103 ZN ZN . 
M 3 ADN C 1 5101 5101 ADN ADN . 
N 4 ZN C 1 5102 5103 ZN ZN . 
O 3 ADN D 1 5101 5101 ADN ADN . 
P 4 ZN D 1 5102 5103 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' ADN . . . I 3 237.25 267.037 222.843 1 161.86 ? O5' ADN 5101 A 1 
HETATM 2 C C5' ADN . . . I 3 237.145 265.618 222.875 1 161.54 ? C5' ADN 5101 A 1 
HETATM 3 C C4' ADN . . . I 3 238.492 264.952 222.741 1 161.86 ? C4' ADN 5101 A 1 
HETATM 4 O O4' ADN . . . I 3 239.514 265.828 223.291 1 162.18 ? O4' ADN 5101 A 1 
HETATM 5 C C3' ADN . . . I 3 238.631 263.624 223.481 1 161.69 ? C3' ADN 5101 A 1 
HETATM 6 O O3' ADN . . . I 3 239.518 262.77 222.762 1 161.99 ? O3' ADN 5101 A 1 
HETATM 7 C C2' ADN . . . I 3 239.287 264.044 224.789 1 161.81 ? C2' ADN 5101 A 1 
HETATM 8 O O2' ADN . . . I 3 239.992 263.016 225.449 1 161.35 ? O2' ADN 5101 A 1 
HETATM 9 C C1' ADN . . . I 3 240.219 265.15 224.312 1 161.95 ? C1' ADN 5101 A 1 
HETATM 10 N N9 ADN . . . I 3 240.578 266.114 225.353 1 160.98 ? N9 ADN 5101 A 1 
HETATM 11 C C8 ADN . . . I 3 241.794 266.235 225.972 1 161.62 ? C8 ADN 5101 A 1 
HETATM 12 N N7 ADN . . . I 3 241.843 267.182 226.876 1 160.98 ? N7 ADN 5101 A 1 
HETATM 13 C C5 ADN . . . I 3 240.566 267.719 226.856 1 160.04 ? C5 ADN 5101 A 1 
HETATM 14 C C6 ADN . . . I 3 239.963 268.762 227.583 1 160.27 ? C6 ADN 5101 A 1 
HETATM 15 N N6 ADN . . . I 3 240.597 269.48 228.515 1 161.45 ? N6 ADN 5101 A 1 
HETATM 16 N N1 ADN . . . I 3 238.669 269.048 227.319 1 159.76 ? N1 ADN 5101 A 1 
HETATM 17 C C2 ADN . . . I 3 238.029 268.334 226.389 1 160.01 ? C2 ADN 5101 A 1 
HETATM 18 N N3 ADN . . . I 3 238.494 267.331 225.642 1 160.33 ? N3 ADN 5101 A 1 
HETATM 19 C C4 ADN . . . I 3 239.775 267.07 225.923 1 160.01 ? C4 ADN 5101 A 1 
#
_model_server_stats.io_time_ms              145 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    155 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           19 
#