data_8SET
#
_model_server_result.job_id            C5RI6t8iDICGkHKeQ_iOSA 
_model_server_result.datetime_utc      '2024-12-21 18:28:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8set 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":5101}' 
#
_entry.id    8SET 
#
_exptl.entry_id    8SET 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              329.206 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SET 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SET 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 K N N 
? 3 M N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 230 A CYS 230 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 3170 A CYS 3170 1_555 A SG CYS 3240 A CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 4876 A CYS 4876 1_555 A SG CYS 4882 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 230 B CYS 230 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 3170 B CYS 3170 1_555 B SG CYS 3240 B CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 B SG CYS 4876 B CYS 4876 1_555 B SG CYS 4882 B CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 C SG CYS 230 C CYS 230 1_555 C SG CYS 253 C CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 C SG CYS 3170 C CYS 3170 1_555 C SG CYS 3240 C CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 C SG CYS 4876 C CYS 4876 1_555 C SG CYS 4882 C CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 D SG CYS 230 D CYS 230 1_555 D SG CYS 253 D CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf11 D SG CYS 3170 D CYS 3170 1_555 D SG CYS 3240 D CYS 3240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 D SG CYS 4876 D CYS 4876 1_555 D SG CYS 4882 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A SG CYS 4958 A CYS 4958 1_555 J ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc2 A SG CYS 4961 A CYS 4961 1_555 J ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc3 A NE2 HIS 4978 A HIS 4978 1_555 J ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc4 A ND1 HIS 4983 A HIS 4983 1_555 J ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc5 B SG CYS 4958 B CYS 4958 1_555 L ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc6 B SG CYS 4961 B CYS 4961 1_555 L ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc7 B NE2 HIS 4978 B HIS 4978 1_555 L ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc8 B ND1 HIS 4983 B HIS 4983 1_555 L ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc9 C SG CYS 4958 C CYS 4958 1_555 N ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc10 C SG CYS 4961 C CYS 4961 1_555 N ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc11 C NE2 HIS 4978 C HIS 4978 1_555 N ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc12 C ND1 HIS 4983 C HIS 4983 1_555 N ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc13 D SG CYS 4958 D CYS 4958 1_555 P ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc14 D SG CYS 4961 D CYS 4961 1_555 P ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc15 D NE2 HIS 4978 D HIS 4978 1_555 P ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc16 D ND1 HIS 4983 D HIS 4983 1_555 P ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
#
_chem_comp.formula           'C10 H12 N5 O6 P' 
_chem_comp.formula_weight    329.206 
_chem_comp.id                CMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'CYCLIC AMP;CAMP' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P CMP doub 70 n n 
P O2P CMP sing 71 n n 
P O5' CMP sing 72 n n 
P O3' CMP sing 73 n n 
O2P HOP2 CMP sing 74 n n 
O5' C5' CMP sing 75 n n 
C5' C4' CMP sing 76 n n 
C5' "H5'1" CMP sing 77 n n 
C5' "H5'2" CMP sing 78 n n 
C4' O4' CMP sing 79 n n 
C4' C3' CMP sing 80 n n 
C4' H4' CMP sing 81 n n 
O4' C1' CMP sing 82 n n 
C3' O3' CMP sing 83 n n 
C3' C2' CMP sing 84 n n 
C3' H3' CMP sing 85 n n 
C2' O2' CMP sing 86 n n 
C2' C1' CMP sing 87 n n 
C2' H2' CMP sing 88 n n 
O2' HO2' CMP sing 89 n n 
C1' N9 CMP sing 90 n n 
C1' H1' CMP sing 91 n n 
N9 C8 CMP sing 92 n y 
N9 C4 CMP sing 93 n y 
C8 N7 CMP doub 94 n y 
C8 H8 CMP sing 95 n n 
N7 C5 CMP sing 96 n y 
C5 C6 CMP sing 97 n y 
C5 C4 CMP doub 98 n y 
C6 N6 CMP sing 99 n n 
C6 N1 CMP doub 100 n y 
N6 HN61 CMP sing 101 n n 
N6 HN62 CMP sing 102 n n 
N1 C2 CMP sing 103 n y 
C2 N3 CMP doub 104 n y 
C2 H2 CMP sing 105 n n 
N3 C4 CMP sing 106 n y 
#
_atom_sites.entry_id                     8SET 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 CMP A 1 5101 5101 CMP CMP . 
J 4 ZN A 1 5102 5103 ZN ZN . 
K 3 CMP B 1 5101 5101 CMP CMP . 
L 4 ZN B 1 5102 5103 ZN ZN . 
M 3 CMP C 1 5101 5101 CMP CMP . 
N 4 ZN C 1 5102 5103 ZN ZN . 
O 3 CMP D 1 5101 5101 CMP CMP . 
P 4 ZN D 1 5102 5103 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P CMP . . . M 3 278.437 251.387 225.014 1 152.52 ? P CMP 5101 C 1 
HETATM 2 O O1P CMP . . . M 3 279.168 252.608 224.514 1 150.81 ? O1P CMP 5101 C 1 
HETATM 3 O O2P CMP . . . M 3 279.216 250.116 225.246 1 150.47 ? O2P CMP 5101 C 1 
HETATM 4 O O5' CMP . . . M 3 277.229 251.006 224.043 1 150.53 ? O5' CMP 5101 C 1 
HETATM 5 C C5' CMP . . . M 3 276.287 250.022 224.445 1 149.82 ? C5' CMP 5101 C 1 
HETATM 6 C C4' CMP . . . M 3 275.717 250.48 225.751 1 150.38 ? C4' CMP 5101 C 1 
HETATM 7 O O4' CMP . . . M 3 274.866 249.546 226.428 1 150.34 ? O4' CMP 5101 C 1 
HETATM 8 C C3' CMP . . . M 3 276.768 250.739 226.796 1 150.58 ? C3' CMP 5101 C 1 
HETATM 9 O O3' CMP . . . M 3 277.645 251.767 226.383 1 151.2 ? O3' CMP 5101 C 1 
HETATM 10 C C2' CMP . . . M 3 275.897 251.002 228.018 1 150.19 ? C2' CMP 5101 C 1 
HETATM 11 O O2' CMP . . . M 3 275.36 252.314 227.974 1 150.15 ? O2' CMP 5101 C 1 
HETATM 12 C C1' CMP . . . M 3 274.746 249.995 227.767 1 149.96 ? C1' CMP 5101 C 1 
HETATM 13 N N9 CMP . . . M 3 274.755 248.838 228.684 1 148.81 ? N9 CMP 5101 C 1 
HETATM 14 C C8 CMP . . . M 3 273.703 248.456 229.427 1 148.51 ? C8 CMP 5101 C 1 
HETATM 15 N N7 CMP . . . M 3 273.987 247.361 230.172 1 148.01 ? N7 CMP 5101 C 1 
HETATM 16 C C5 CMP . . . M 3 275.252 247.016 229.896 1 148.51 ? C5 CMP 5101 C 1 
HETATM 17 C C6 CMP . . . M 3 276.18 245.952 230.331 1 149.08 ? C6 CMP 5101 C 1 
HETATM 18 N N6 CMP . . . M 3 275.792 245.023 231.23 1 148.87 ? N6 CMP 5101 C 1 
HETATM 19 N N1 CMP . . . M 3 277.421 245.929 229.811 1 149.33 ? N1 CMP 5101 C 1 
HETATM 20 C C2 CMP . . . M 3 277.816 246.848 228.918 1 149.65 ? C2 CMP 5101 C 1 
HETATM 21 N N3 CMP . . . M 3 277.025 247.837 228.477 1 149.1 ? N3 CMP 5101 C 1 
HETATM 22 C C4 CMP . . . M 3 275.755 247.984 228.916 1 148.51 ? C4 CMP 5101 C 1 
#
_model_server_stats.io_time_ms              162 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    437 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           22 
#