data_8SF0 # _model_server_result.job_id 9Q-unmzWzvG9xxZ_ssO40A _model_server_result.datetime_utc '2024-10-19 05:26:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sf0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":5101}' # _entry.id 8SF0 # _exptl.entry_id 8SF0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SF0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SF0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4876 A CYS 4876 1_555 A SG CYS 4882 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 4876 B CYS 4876 1_555 B SG CYS 4882 B CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 4876 C CYS 4876 1_555 C SG CYS 4882 C CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 4876 D CYS 4876 1_555 D SG CYS 4882 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A SG CYS 4958 A CYS 4958 1_555 F ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A SG CYS 4961 A CYS 4961 1_555 F ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc3 A NE2 HIS 4978 A HIS 4978 1_555 F ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 A ND1 HIS 4983 A HIS 4983 1_555 F ZN ZN . A ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc5 B SG CYS 4958 B CYS 4958 1_555 H ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 B SG CYS 4961 B CYS 4961 1_555 H ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc7 B NE2 HIS 4978 B HIS 4978 1_555 H ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc8 B ND1 HIS 4983 B HIS 4983 1_555 H ZN ZN . B ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc9 C SG CYS 4958 C CYS 4958 1_555 J ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc10 C SG CYS 4961 C CYS 4961 1_555 J ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc11 C NE2 HIS 4978 C HIS 4978 1_555 J ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc12 C ND1 HIS 4983 C HIS 4983 1_555 J ZN ZN . C ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc13 D SG CYS 4958 D CYS 4958 1_555 L ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc14 D SG CYS 4961 D CYS 4961 1_555 L ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc15 D NE2 HIS 4978 D HIS 4978 1_555 L ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc16 D ND1 HIS 4983 D HIS 4983 1_555 L ZN ZN . D ZN 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # _atom_sites.entry_id 8SF0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CMP A 1 5101 5101 CMP CMP . F 3 ZN A 1 5102 5103 ZN ZN . G 2 CMP B 1 5101 5101 CMP CMP . H 3 ZN B 1 5102 5103 ZN ZN . I 2 CMP C 1 5101 5101 CMP CMP . J 3 ZN C 1 5102 5103 ZN ZN . K 2 CMP D 1 5101 5101 CMP CMP . L 3 ZN D 1 5102 5103 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . K 2 263.305 278.511 224.34 1 50.11 ? P CMP 5101 D 1 HETATM 2 O O1P CMP . . . K 2 262.401 277.855 223.324 1 50.11 ? O1P CMP 5101 D 1 HETATM 3 O O2P CMP . . . K 2 263.125 279.979 224.644 1 50.11 ? O2P CMP 5101 D 1 HETATM 4 O O5' CMP . . . K 2 264.813 278.301 223.838 1 50.11 ? O5' CMP 5101 D 1 HETATM 5 C C5' CMP . . . K 2 265.371 276.996 223.714 1 50.11 ? C5' CMP 5101 D 1 HETATM 6 C C4' CMP . . . K 2 264.665 276.078 224.667 1 50.11 ? C4' CMP 5101 D 1 HETATM 7 O O4' CMP . . . K 2 265.501 274.998 225.133 1 50.11 ? O4' CMP 5101 D 1 HETATM 8 C C3' CMP . . . K 2 264.249 276.757 225.944 1 50.11 ? C3' CMP 5101 D 1 HETATM 9 O O3' CMP . . . K 2 263.193 277.669 225.722 1 50.11 ? O3' CMP 5101 D 1 HETATM 10 C C2' CMP . . . K 2 263.949 275.574 226.855 1 50.11 ? C2' CMP 5101 D 1 HETATM 11 O O2' CMP . . . K 2 262.666 275.035 226.574 1 50.11 ? O2' CMP 5101 D 1 HETATM 12 C C1' CMP . . . K 2 265.016 274.564 226.391 1 50.11 ? C1' CMP 5101 D 1 HETATM 13 N N9 CMP . . . K 2 266.141 274.439 227.339 1 50.11 ? N9 CMP 5101 D 1 HETATM 14 C C8 CMP . . . K 2 266.475 273.303 227.976 1 50.11 ? C8 CMP 5101 D 1 HETATM 15 N N7 CMP . . . K 2 267.546 273.487 228.784 1 50.11 ? N7 CMP 5101 D 1 HETATM 16 C C5 CMP . . . K 2 267.923 274.77 228.666 1 50.11 ? C5 CMP 5101 D 1 HETATM 17 C C6 CMP . . . K 2 268.985 275.621 229.245 1 50.11 ? C6 CMP 5101 D 1 HETATM 18 N N6 CMP . . . K 2 269.876 275.118 230.131 1 50.11 ? N6 CMP 5101 D 1 HETATM 19 N N1 CMP . . . K 2 269.034 276.913 228.859 1 50.11 ? N1 CMP 5101 D 1 HETATM 20 C C2 CMP . . . K 2 268.152 277.419 227.981 1 50.11 ? C2 CMP 5101 D 1 HETATM 21 N N3 CMP . . . K 2 267.165 276.704 227.418 1 50.11 ? N3 CMP 5101 D 1 HETATM 22 C C4 CMP . . . K 2 266.997 275.394 227.713 1 50.11 ? C4 CMP 5101 D 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #