data_8SFV # _model_server_result.job_id AHVHG5Ij31c_xpUZG68z2w _model_server_result.datetime_utc '2024-10-11 02:23:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sfv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":307}' # _entry.id 8SFV # _exptl.entry_id 8SFV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SFV _cell.length_a 111.251 _cell.length_b 111.251 _cell.length_c 193.802 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SFV _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,V 1 1 B,M,N,O,P,Q,R,S,T,U,W 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_454 -y-1/2,x,z-1/4 0 -1 0 1 0 0 0 0 1 -55.6255 0 -48.4505 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 26 B CYS 26 1_555 B SG CYS 97 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? covale ? covale1 A C PHE 65 A PHE 64 1_555 A N1 CR2 66 A CR2 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale2 A C3 CR2 66 A CR2 66 1_555 A N VAL 67 A VAL 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? metalc ? metalc1 A OE2 GLU 6 A GLU 5 1_555 G NA NA . A NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc2 A O PRO 55 A PRO 54 1_555 H NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc3 A O PRO 59 A PRO 58 1_555 J NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc4 A O THR 60 A THR 59 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc5 A OG1 THR 63 A THR 62 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc6 A OG1 THR 64 A THR 63 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc7 A O3 CR2 66 A CR2 66 1_555 K NA NA . A NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc8 A O LYS 78 A LYS 79 1_555 G NA NA . A NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc9 A OD1 ASN 120 A ASN 121 1_555 K NA NA . A NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc10 A OH TYR 144 A TYR 145 1_555 J NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc11 A OG SER 201 A SER 202 1_555 L NA NA . A NA 310 10_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc12 A O THR 202 A THR 203 1_555 L NA NA . A NA 310 10_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc13 G NA NA . A NA 305 1_555 V O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc14 G NA NA . A NA 305 1_555 V O HOH . A HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc15 I NA NA . A NA 307 1_555 V O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.064 ? metalc ? metalc16 I NA NA . A NA 307 1_555 V O HOH . A HOH 421 10_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.064 ? metalc ? metalc17 J NA NA . A NA 308 1_555 V O HOH . A HOH 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc18 K NA NA . A NA 309 1_555 V O HOH . A HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc19 B OG SER 25 B SER 25 1_555 T NA NA . B NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? metalc ? metalc20 B OG SER 53 B SER 53 1_555 R NA NA . B NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc21 B OG SER 55 B SER 55 1_555 R NA NA . B NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc22 B OG1 THR 57 B THR 57 1_555 R NA NA . B NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc23 B O ASN 75 B ASN 75 1_555 S NA NA . B NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc24 B OD1 ASN 78 B ASN 78 1_555 S NA NA . B NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc25 B OE1 GLU 113 B GLU 113 1_555 U NA NA . B NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc26 R NA NA . B NA 206 1_555 W O HOH . B HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc27 R NA NA . B NA 206 1_555 W O HOH . B HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc28 T NA NA . B NA 208 1_555 W O HOH . B HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc29 T NA NA . B NA 208 1_555 W O HOH . B HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc30 U NA NA . B NA 209 1_555 W O HOH . B HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8SFV _atom_sites.fract_transf_matrix[1][1] 0.008989 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 2 GOL GOL . D 4 SO4 A 1 302 2 SO4 SO4 . E 4 SO4 A 1 303 4 SO4 SO4 . F 5 NA A 1 304 1 NA NA . G 5 NA A 1 305 7 NA NA . H 5 NA A 1 306 9 NA NA . I 5 NA A 1 307 14 NA NA . J 5 NA A 1 308 15 NA NA . K 5 NA A 1 309 18 NA NA . L 5 NA A 1 310 19 NA NA . M 3 GOL B 1 201 6 GOL GOL . N 3 GOL B 1 202 10 GOL GOL . O 4 SO4 B 1 203 3 SO4 SO4 . P 4 SO4 B 1 204 5 SO4 SO4 . Q 4 SO4 B 1 205 6 SO4 SO4 . R 5 NA B 1 206 2 NA NA . S 5 NA B 1 207 6 NA NA . T 5 NA B 1 208 11 NA NA . U 5 NA B 1 209 16 NA NA . V 6 HOH A 1 401 347 HOH HOH . V 6 HOH A 2 402 114 HOH HOH . V 6 HOH A 3 403 87 HOH HOH . V 6 HOH A 4 404 28 HOH HOH . V 6 HOH A 5 405 331 HOH HOH . V 6 HOH A 6 406 110 HOH HOH . V 6 HOH A 7 407 90 HOH HOH . V 6 HOH A 8 408 37 HOH HOH . V 6 HOH A 9 409 205 HOH HOH . V 6 HOH A 10 410 107 HOH HOH . V 6 HOH A 11 411 18 HOH HOH . V 6 HOH A 12 412 117 HOH HOH . V 6 HOH A 13 413 122 HOH HOH . V 6 HOH A 14 414 173 HOH HOH . V 6 HOH A 15 415 335 HOH HOH . V 6 HOH A 16 416 44 HOH HOH . V 6 HOH A 17 417 180 HOH HOH . V 6 HOH A 18 418 270 HOH HOH . V 6 HOH A 19 419 221 HOH HOH . V 6 HOH A 20 420 2 HOH HOH . V 6 HOH A 21 421 103 HOH HOH . V 6 HOH A 22 422 11 HOH HOH . V 6 HOH A 23 423 85 HOH HOH . V 6 HOH A 24 424 318 HOH HOH . V 6 HOH A 25 425 70 HOH HOH . V 6 HOH A 26 426 68 HOH HOH . V 6 HOH A 27 427 317 HOH HOH . V 6 HOH A 28 428 33 HOH HOH . V 6 HOH A 29 429 82 HOH HOH . V 6 HOH A 30 430 5 HOH HOH . V 6 HOH A 31 431 84 HOH HOH . V 6 HOH A 32 432 7 HOH HOH . V 6 HOH A 33 433 32 HOH HOH . V 6 HOH A 34 434 9 HOH HOH . V 6 HOH A 35 435 40 HOH HOH . V 6 HOH A 36 436 59 HOH HOH . V 6 HOH A 37 437 58 HOH HOH . V 6 HOH A 38 438 52 HOH HOH . V 6 HOH A 39 439 100 HOH HOH . V 6 HOH A 40 440 307 HOH HOH . V 6 HOH A 41 441 4 HOH HOH . V 6 HOH A 42 442 338 HOH HOH . V 6 HOH A 43 443 178 HOH HOH . V 6 HOH A 44 444 257 HOH HOH . V 6 HOH A 45 445 276 HOH HOH . V 6 HOH A 46 446 116 HOH HOH . V 6 HOH A 47 447 104 HOH HOH . V 6 HOH A 48 448 66 HOH HOH . V 6 HOH A 49 449 43 HOH HOH . V 6 HOH A 50 450 46 HOH HOH . V 6 HOH A 51 451 343 HOH HOH . V 6 HOH A 52 452 61 HOH HOH . V 6 HOH A 53 453 17 HOH HOH . V 6 HOH A 54 454 12 HOH HOH . V 6 HOH A 55 455 83 HOH HOH . V 6 HOH A 56 456 341 HOH HOH . V 6 HOH A 57 457 111 HOH HOH . V 6 HOH A 58 458 75 HOH HOH . V 6 HOH A 59 459 81 HOH HOH . V 6 HOH A 60 460 3 HOH HOH . V 6 HOH A 61 461 236 HOH HOH . V 6 HOH A 62 462 280 HOH HOH . V 6 HOH A 63 463 302 HOH HOH . V 6 HOH A 64 464 30 HOH HOH . V 6 HOH A 65 465 300 HOH HOH . V 6 HOH A 66 466 225 HOH HOH . V 6 HOH A 67 467 24 HOH HOH . V 6 HOH A 68 468 108 HOH HOH . V 6 HOH A 69 469 319 HOH HOH . V 6 HOH A 70 470 348 HOH HOH . V 6 HOH A 71 471 211 HOH HOH . V 6 HOH A 72 472 176 HOH HOH . V 6 HOH A 73 473 50 HOH HOH . V 6 HOH A 74 474 88 HOH HOH . V 6 HOH A 75 475 8 HOH HOH . V 6 HOH A 76 476 235 HOH HOH . V 6 HOH A 77 477 109 HOH HOH . V 6 HOH A 78 478 26 HOH HOH . V 6 HOH A 79 479 337 HOH HOH . V 6 HOH A 80 480 220 HOH HOH . V 6 HOH A 81 481 181 HOH HOH . V 6 HOH A 82 482 199 HOH HOH . V 6 HOH A 83 483 175 HOH HOH . V 6 HOH A 84 484 271 HOH HOH . V 6 HOH A 85 485 56 HOH HOH . V 6 HOH A 86 486 80 HOH HOH . V 6 HOH A 87 487 54 HOH HOH . V 6 HOH A 88 488 208 HOH HOH . V 6 HOH A 89 489 112 HOH HOH . V 6 HOH A 90 490 64 HOH HOH . V 6 HOH A 91 491 102 HOH HOH . V 6 HOH A 92 492 20 HOH HOH . V 6 HOH A 93 493 25 HOH HOH . V 6 HOH A 94 494 115 HOH HOH . V 6 HOH A 95 495 76 HOH HOH . V 6 HOH A 96 496 10 HOH HOH . V 6 HOH A 97 497 283 HOH HOH . V 6 HOH A 98 498 21 HOH HOH . V 6 HOH A 99 499 89 HOH HOH . V 6 HOH A 100 500 311 HOH HOH . V 6 HOH A 101 501 47 HOH HOH . V 6 HOH A 102 502 234 HOH HOH . V 6 HOH A 103 503 344 HOH HOH . V 6 HOH A 104 504 249 HOH HOH . V 6 HOH A 105 505 45 HOH HOH . V 6 HOH A 106 506 174 HOH HOH . V 6 HOH A 107 507 113 HOH HOH . V 6 HOH A 108 508 240 HOH HOH . V 6 HOH A 109 509 22 HOH HOH . V 6 HOH A 110 510 269 HOH HOH . V 6 HOH A 111 511 239 HOH HOH . V 6 HOH A 112 512 342 HOH HOH . V 6 HOH A 113 513 185 HOH HOH . V 6 HOH A 114 514 198 HOH HOH . V 6 HOH A 115 515 195 HOH HOH . V 6 HOH A 116 516 273 HOH HOH . V 6 HOH A 117 517 320 HOH HOH . V 6 HOH A 118 518 219 HOH HOH . V 6 HOH A 119 519 323 HOH HOH . V 6 HOH A 120 520 23 HOH HOH . V 6 HOH A 121 521 309 HOH HOH . W 6 HOH B 1 301 244 HOH HOH . W 6 HOH B 2 302 187 HOH HOH . W 6 HOH B 3 303 150 HOH HOH . W 6 HOH B 4 304 156 HOH HOH . W 6 HOH B 5 305 139 HOH HOH . W 6 HOH B 6 306 238 HOH HOH . W 6 HOH B 7 307 124 HOH HOH . W 6 HOH B 8 308 190 HOH HOH . W 6 HOH B 9 309 281 HOH HOH . W 6 HOH B 10 310 137 HOH HOH . W 6 HOH B 11 311 152 HOH HOH . W 6 HOH B 12 312 151 HOH HOH . W 6 HOH B 13 313 143 HOH HOH . W 6 HOH B 14 314 136 HOH HOH . W 6 HOH B 15 315 289 HOH HOH . W 6 HOH B 16 316 129 HOH HOH . W 6 HOH B 17 317 157 HOH HOH . W 6 HOH B 18 318 167 HOH HOH . W 6 HOH B 19 319 120 HOH HOH . W 6 HOH B 20 320 121 HOH HOH . W 6 HOH B 21 321 135 HOH HOH . W 6 HOH B 22 322 170 HOH HOH . W 6 HOH B 23 323 301 HOH HOH . W 6 HOH B 24 324 123 HOH HOH . W 6 HOH B 25 325 164 HOH HOH . W 6 HOH B 26 326 128 HOH HOH . W 6 HOH B 27 327 96 HOH HOH . W 6 HOH B 28 328 162 HOH HOH . W 6 HOH B 29 329 193 HOH HOH . W 6 HOH B 30 330 321 HOH HOH . W 6 HOH B 31 331 326 HOH HOH . W 6 HOH B 32 332 159 HOH HOH . W 6 HOH B 33 333 192 HOH HOH . W 6 HOH B 34 334 350 HOH HOH . W 6 HOH B 35 335 148 HOH HOH . W 6 HOH B 36 336 163 HOH HOH . W 6 HOH B 37 337 160 HOH HOH . W 6 HOH B 38 338 345 HOH HOH . W 6 HOH B 39 339 340 HOH HOH . W 6 HOH B 40 340 93 HOH HOH . W 6 HOH B 41 341 168 HOH HOH . W 6 HOH B 42 342 278 HOH HOH . W 6 HOH B 43 343 189 HOH HOH . W 6 HOH B 44 344 288 HOH HOH . W 6 HOH B 45 345 218 HOH HOH . W 6 HOH B 46 346 243 HOH HOH . W 6 HOH B 47 347 209 HOH HOH . W 6 HOH B 48 348 279 HOH HOH . W 6 HOH B 49 349 144 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 5 _atom_site.Cartn_x 0 _atom_site.Cartn_y 0 _atom_site.Cartn_z -20.749 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 31.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 307 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #