data_8SG5
#
_model_server_result.job_id            dbE3M44k2DsKC0cBKXnlEA 
_model_server_result.datetime_utc      '2024-10-12 13:19:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sg5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"MA","auth_seq_id":601}' 
#
_entry.id    8SG5 
#
_exptl.entry_id    8SG5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.01 
_cell.angle_gamma         90 
_cell.entry_id            8SG5 
_cell.length_a            104.131 
_cell.length_b            200.679 
_cell.length_c            110.819 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SG5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,J,K,L,M 1 1 
B,N,O,P,Q,R 2 1 
C,S,T,U,V,W 3 1 
D,X,Y,Z,AA,BA 4 1 
E,CA,DA,EA,FA,GA 5 1 
F,HA,IA,JA,KA,LA 6 1 
G,MA,NA,OA,PA,QA 7 1 
H,RA,SA,TA,UA 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 N N N 
? 2 S N N 
? 2 X N N 
? 2 CA N N 
? 2 HA N N 
? 2 MA N N 
? 2 RA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 420 A CYS 441 1_555 I FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc2 I FE HEM . A HEM 601 1_555 J NAN CL6 . A CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc3 B SG CYS 420 B CYS 441 1_555 N FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc4 N FE HEM . B HEM 601 1_555 O NAN CL6 . B CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc5 C SG CYS 420 C CYS 441 1_555 S FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc6 S FE HEM . C HEM 601 1_555 T NAN CL6 . C CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? 
metalc ? metalc7 D SG CYS 420 D CYS 441 1_555 X FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc8 X FE HEM . D HEM 601 1_555 Y NAN CL6 . D CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc9 E SG CYS 420 E CYS 441 1_555 CA FE HEM . E HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc10 CA FE HEM . E HEM 601 1_555 DA NAN CL6 . E CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc11 F SG CYS 420 F CYS 441 1_555 HA FE HEM . F HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc12 HA FE HEM . F HEM 601 1_555 IA NAN CL6 . F CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? 
metalc ? metalc13 G SG CYS 420 G CYS 441 1_555 MA FE HEM . G HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc14 MA FE HEM . G HEM 601 1_555 NA NAN CL6 . G CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? 
metalc ? metalc15 H SG CYS 420 H CYS 441 1_555 RA FE HEM . H HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc16 RA FE HEM . H HEM 601 1_555 SA NAN CL6 . H CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 275 n n 
CHA C4D HEM doub 276 n n 
CHA HHA HEM sing 277 n n 
CHB C4A HEM sing 278 n n 
CHB C1B HEM doub 279 n n 
CHB HHB HEM sing 280 n n 
CHC C4B HEM sing 281 n n 
CHC C1C HEM doub 282 n n 
CHC HHC HEM sing 283 n n 
CHD C4C HEM doub 284 n n 
CHD C1D HEM sing 285 n n 
CHD HHD HEM sing 286 n n 
C1A C2A HEM doub 287 n y 
C1A NA HEM sing 288 n y 
C2A C3A HEM sing 289 n y 
C2A CAA HEM sing 290 n n 
C3A C4A HEM doub 291 n y 
C3A CMA HEM sing 292 n n 
C4A NA HEM sing 293 n y 
CMA HMA HEM sing 294 n n 
CMA HMAA HEM sing 295 n n 
CMA HMAB HEM sing 296 n n 
CAA CBA HEM sing 297 n n 
CAA HAA HEM sing 298 n n 
CAA HAAA HEM sing 299 n n 
CBA CGA HEM sing 300 n n 
CBA HBA HEM sing 301 n n 
CBA HBAA HEM sing 302 n n 
CGA O1A HEM doub 303 n n 
CGA O2A HEM sing 304 n n 
C1B C2B HEM sing 305 n n 
C1B NB HEM sing 306 n n 
C2B C3B HEM doub 307 n n 
C2B CMB HEM sing 308 n n 
C3B C4B HEM sing 309 n n 
C3B CAB HEM sing 310 n n 
C4B NB HEM doub 311 n n 
CMB HMB HEM sing 312 n n 
CMB HMBA HEM sing 313 n n 
CMB HMBB HEM sing 314 n n 
CAB CBB HEM doub 315 n n 
CAB HAB HEM sing 316 n n 
CBB HBB HEM sing 317 n n 
CBB HBBA HEM sing 318 n n 
C1C C2C HEM sing 319 n y 
C1C NC HEM sing 320 n y 
C2C C3C HEM doub 321 n y 
C2C CMC HEM sing 322 n n 
C3C C4C HEM sing 323 n y 
C3C CAC HEM sing 324 n n 
C4C NC HEM sing 325 n y 
CMC HMC HEM sing 326 n n 
CMC HMCA HEM sing 327 n n 
CMC HMCB HEM sing 328 n n 
CAC CBC HEM doub 329 n n 
CAC HAC HEM sing 330 n n 
CBC HBC HEM sing 331 n n 
CBC HBCA HEM sing 332 n n 
C1D C2D HEM sing 333 n n 
C1D ND HEM doub 334 n n 
C2D C3D HEM doub 335 n n 
C2D CMD HEM sing 336 n n 
C3D C4D HEM sing 337 n n 
C3D CAD HEM sing 338 n n 
C4D ND HEM sing 339 n n 
CMD HMD HEM sing 340 n n 
CMD HMDA HEM sing 341 n n 
CMD HMDB HEM sing 342 n n 
CAD CBD HEM sing 343 n n 
CAD HAD HEM sing 344 n n 
CAD HADA HEM sing 345 n n 
CBD CGD HEM sing 346 n n 
CBD HBD HEM sing 347 n n 
CBD HBDA HEM sing 348 n n 
CGD O1D HEM doub 349 n n 
CGD O2D HEM sing 350 n n 
O2A H2A HEM sing 351 n n 
O2D H2D HEM sing 352 n n 
FE NA HEM sing 353 n n 
FE NB HEM sing 354 n n 
FE NC HEM sing 355 n n 
FE ND HEM sing 356 n n 
#
_atom_sites.entry_id                     8SG5 
_atom_sites.fract_transf_matrix[1][1]    0.009603 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000337 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004983 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009029 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 HEM A 1 601 601 HEM HEM . 
J 3 CL6 A 1 602 602 CL6 CL6 . 
K 3 CL6 A 1 603 603 CL6 CL6 . 
L 3 CL6 A 1 604 604 CL6 CL6 . 
M 4 CE9 A 1 605 605 CE9 CE9 . 
N 2 HEM B 1 601 601 HEM HEM . 
O 3 CL6 B 1 602 602 CL6 CL6 . 
P 3 CL6 B 1 603 603 CL6 CL6 . 
Q 3 CL6 B 1 604 604 CL6 CL6 . 
R 4 CE9 B 1 605 605 CE9 CE9 . 
S 2 HEM C 1 601 601 HEM HEM . 
T 3 CL6 C 1 602 602 CL6 CL6 . 
U 3 CL6 C 1 603 603 CL6 CL6 . 
V 3 CL6 C 1 604 604 CL6 CL6 . 
W 4 CE9 C 1 605 605 CE9 CE9 . 
X 2 HEM D 1 601 601 HEM HEM . 
Y 3 CL6 D 1 602 602 CL6 CL6 . 
Z 3 CL6 D 1 603 603 CL6 CL6 . 
AA 3 CL6 D 1 604 604 CL6 CL6 . 
BA 4 CE9 D 1 605 605 CE9 CE9 . 
CA 2 HEM E 1 601 601 HEM HEM . 
DA 3 CL6 E 1 602 602 CL6 CL6 . 
EA 3 CL6 E 1 603 603 CL6 CL6 . 
FA 3 CL6 E 1 604 604 CL6 CL6 . 
GA 4 CE9 E 1 605 605 CE9 CE9 . 
HA 2 HEM F 1 601 601 HEM HEM . 
IA 3 CL6 F 1 602 602 CL6 CL6 . 
JA 3 CL6 F 1 603 603 CL6 CL6 . 
KA 3 CL6 F 1 604 604 CL6 CL6 . 
LA 4 CE9 F 1 605 605 CE9 CE9 . 
MA 2 HEM G 1 601 601 HEM HEM . 
NA 3 CL6 G 1 602 602 CL6 CL6 . 
OA 3 CL6 G 1 603 603 CL6 CL6 . 
PA 3 CL6 G 1 604 604 CL6 CL6 . 
QA 4 CE9 G 1 605 605 CE9 CE9 . 
RA 2 HEM H 1 601 601 HEM HEM . 
SA 3 CL6 H 1 602 602 CL6 CL6 . 
TA 3 CL6 H 1 603 603 CL6 CL6 . 
UA 3 CL6 H 1 604 604 CL6 CL6 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . MA 2 -20.685 -76.222 74.055 1 72.75 ? CHA HEM 601 G 1 
HETATM 2 C CHB HEM . . . MA 2 -22.059 -73.979 69.979 1 71.59 ? CHB HEM 601 G 1 
HETATM 3 C CHC HEM . . . MA 2 -19.743 -69.934 71.435 1 73.92 ? CHC HEM 601 G 1 
HETATM 4 C CHD HEM . . . MA 2 -18.44 -72.178 75.516 1 73.97 ? CHD HEM 601 G 1 
HETATM 5 C C1A HEM . . . MA 2 -21.265 -75.923 72.844 1 73.89 ? C1A HEM 601 G 1 
HETATM 6 C C2A HEM . . . MA 2 -22.075 -76.822 72.119 1 73.82 ? C2A HEM 601 G 1 
HETATM 7 C C3A HEM . . . MA 2 -22.46 -76.203 70.979 1 72.1 ? C3A HEM 601 G 1 
HETATM 8 C C4A HEM . . . MA 2 -21.893 -74.912 70.98 1 72.85 ? C4A HEM 601 G 1 
HETATM 9 C CMA HEM . . . MA 2 -23.342 -76.804 69.918 1 72.19 ? CMA HEM 601 G 1 
HETATM 10 C CAA HEM . . . MA 2 -22.461 -78.223 72.515 1 70.51 ? CAA HEM 601 G 1 
HETATM 11 C CBA HEM . . . MA 2 -23.789 -78.209 73.271 1 70.87 ? CBA HEM 601 G 1 
HETATM 12 C CGA HEM . . . MA 2 -24.356 -79.603 73.283 1 69.53 ? CGA HEM 601 G 1 
HETATM 13 O O1A HEM . . . MA 2 -25.584 -79.779 73.449 1 68.56 ? O1A HEM 601 G 1 
HETATM 14 O O2A HEM . . . MA 2 -23.594 -80.585 73.132 1 70.27 ? O2A HEM 601 G 1 
HETATM 15 C C1B HEM . . . MA 2 -21.512 -72.694 70.059 1 72.26 ? C1B HEM 601 G 1 
HETATM 16 C C2B HEM . . . MA 2 -21.676 -71.753 69.008 1 75.99 ? C2B HEM 601 G 1 
HETATM 17 C C3B HEM . . . MA 2 -21.038 -70.607 69.39 1 73.34 ? C3B HEM 601 G 1 
HETATM 18 C C4B HEM . . . MA 2 -20.468 -70.889 70.724 1 69.79 ? C4B HEM 601 G 1 
HETATM 19 C CMB HEM . . . MA 2 -22.427 -72 67.723 1 72.66 ? CMB HEM 601 G 1 
HETATM 20 C CAB HEM . . . MA 2 -20.908 -69.336 68.647 1 75.08 ? CAB HEM 601 G 1 
HETATM 21 C CBB HEM . . . MA 2 -21.973 -68.672 68.206 1 75.55 ? CBB HEM 601 G 1 
HETATM 22 C C1C HEM . . . MA 2 -19.237 -70.166 72.704 1 74.69 ? C1C HEM 601 G 1 
HETATM 23 C C2C HEM . . . MA 2 -18.661 -69.202 73.551 1 76.44 ? C2C HEM 601 G 1 
HETATM 24 C C3C HEM . . . MA 2 -18.291 -69.853 74.719 1 78.32 ? C3C HEM 601 G 1 
HETATM 25 C C4C HEM . . . MA 2 -18.649 -71.218 74.566 1 76.74 ? C4C HEM 601 G 1 
HETATM 26 C CMC HEM . . . MA 2 -18.482 -67.737 73.244 1 78.95 ? CMC HEM 601 G 1 
HETATM 27 C CAC HEM . . . MA 2 -17.637 -69.268 75.906 1 79.63 ? CAC HEM 601 G 1 
HETATM 28 C CBC HEM . . . MA 2 -18.257 -68.362 76.653 1 87.73 ? CBC HEM 601 G 1 
HETATM 29 C C1D HEM . . . MA 2 -18.956 -73.463 75.391 1 74.29 ? C1D HEM 601 G 1 
HETATM 30 C C2D HEM . . . MA 2 -18.717 -74.453 76.443 1 78.58 ? C2D HEM 601 G 1 
HETATM 31 C C3D HEM . . . MA 2 -19.334 -75.577 76.051 1 77.48 ? C3D HEM 601 G 1 
HETATM 32 C C4D HEM . . . MA 2 -19.957 -75.27 74.753 1 74.85 ? C4D HEM 601 G 1 
HETATM 33 C CMD HEM . . . MA 2 -17.93 -74.242 77.711 1 74.76 ? CMD HEM 601 G 1 
HETATM 34 C CAD HEM . . . MA 2 -19.363 -76.875 76.817 1 75.66 ? CAD HEM 601 G 1 
HETATM 35 C CBD HEM . . . MA 2 -20.609 -76.937 77.702 1 77.37 ? CBD HEM 601 G 1 
HETATM 36 C CGD HEM . . . MA 2 -20.476 -78.063 78.699 1 83.08 ? CGD HEM 601 G 1 
HETATM 37 O O1D HEM . . . MA 2 -21.103 -78.023 79.78 1 86.11 ? O1D HEM 601 G 1 
HETATM 38 O O2D HEM . . . MA 2 -19.746 -79.047 78.447 1 83.76 ? O2D HEM 601 G 1 
HETATM 39 N NA HEM . . . MA 2 -21.149 -74.753 72.122 1 72.78 ? NA HEM 601 G 1 
HETATM 40 N NB HEM . . . MA 2 -20.8 -72.149 71.054 1 71.21 ? NB HEM 601 G 1 
HETATM 41 N NC HEM . . . MA 2 -19.234 -71.377 73.337 1 76.6 ? NC HEM 601 G 1 
HETATM 42 N ND HEM . . . MA 2 -19.701 -73.993 74.406 1 73.58 ? ND HEM 601 G 1 
HETATM 43 FE FE HEM . . . MA 2 -20.266 -73.123 72.84 1 75.61 ? FE HEM 601 G 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#