data_8SG5 # _model_server_result.job_id vR1X65NK0OWaBWbc0CFw1g _model_server_result.datetime_utc '2024-11-25 00:52:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"SA","auth_seq_id":602}' # _entry.id 8SG5 # _exptl.entry_id 8SG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 344.837 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(2-CHLOROPHENYL)(DIPHENYL)METHYL]-1H-IMIDAZOLE _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.01 _cell.angle_gamma 90 _cell.entry_id 8SG5 _cell.length_a 104.131 _cell.length_b 200.679 _cell.length_c 110.819 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 PISA monomeric 1 author_and_software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I,J,K,L,M 1 1 B,N,O,P,Q,R 2 1 C,S,T,U,V,W 3 1 D,X,Y,Z,AA,BA 4 1 E,CA,DA,EA,FA,GA 5 1 F,HA,IA,JA,KA,LA 6 1 G,MA,NA,OA,PA,QA 7 1 H,RA,SA,TA,UA 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 L N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 NA N N ? 3 OA N N ? 3 PA N N ? 3 SA N N ? 3 TA N N ? 3 UA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 420 A CYS 441 1_555 I FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 I FE HEM . A HEM 601 1_555 J NAN CL6 . A CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc3 B SG CYS 420 B CYS 441 1_555 N FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 N FE HEM . B HEM 601 1_555 O NAN CL6 . B CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc5 C SG CYS 420 C CYS 441 1_555 S FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc6 S FE HEM . C HEM 601 1_555 T NAN CL6 . C CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc7 D SG CYS 420 D CYS 441 1_555 X FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc8 X FE HEM . D HEM 601 1_555 Y NAN CL6 . D CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc9 E SG CYS 420 E CYS 441 1_555 CA FE HEM . E HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc10 CA FE HEM . E HEM 601 1_555 DA NAN CL6 . E CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc11 F SG CYS 420 F CYS 441 1_555 HA FE HEM . F HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 HA FE HEM . F HEM 601 1_555 IA NAN CL6 . F CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc13 G SG CYS 420 G CYS 441 1_555 MA FE HEM . G HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc14 MA FE HEM . G HEM 601 1_555 NA NAN CL6 . G CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc15 H SG CYS 420 H CYS 441 1_555 RA FE HEM . H HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc16 RA FE HEM . H HEM 601 1_555 SA NAN CL6 . H CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? # _chem_comp.formula 'C22 H17 Cl N2' _chem_comp.formula_weight 344.837 _chem_comp.id CL6 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(2-CHLOROPHENYL)(DIPHENYL)METHYL]-1H-IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CLOTRIMAZOLE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CLAY CAX CL6 sing 171 n n CAX CAV CL6 sing 172 n y CAX CAW CL6 doub 173 n y CAV CAT CL6 doub 174 n y CAV HAV CL6 sing 175 n n CAT CAS CL6 sing 176 n y CAT HAT CL6 sing 177 n n CAS CAU CL6 doub 178 n y CAS HAS CL6 sing 179 n n CAU CAW CL6 sing 180 n y CAU HAU CL6 sing 181 n n CAW CAR CL6 sing 182 n n CAR CAL CL6 sing 183 n n CAR CAC CL6 sing 184 n n CAR NAO CL6 sing 185 n n CAC CAA CL6 doub 186 n y CAC CAE CL6 sing 187 n y CAE CAF CL6 doub 188 n y CAE HAE CL6 sing 189 n n CAF CAD CL6 sing 190 n y CAF HAF CL6 sing 191 n n CAD CAB CL6 doub 192 n y CAD HAD CL6 sing 193 n n CAB CAA CL6 sing 194 n y CAB HAB CL6 sing 195 n n CAA HAA CL6 sing 196 n n NAO CAP CL6 sing 197 n y NAO CAM CL6 sing 198 n y CAM NAN CL6 doub 199 n y CAM HAM CL6 sing 200 n n NAN CAQ CL6 sing 201 n y CAQ CAP CL6 doub 202 n y CAQ HAQ CL6 sing 203 n n CAP HAP CL6 sing 204 n n CAL CAK CL6 sing 205 n y CAL CAJ CL6 doub 206 n y CAK CAI CL6 doub 207 n y CAK HAK CL6 sing 208 n n CAI CAG CL6 sing 209 n y CAI HAI CL6 sing 210 n n CAG CAH CL6 doub 211 n y CAG HAG CL6 sing 212 n n CAH CAJ CL6 sing 213 n y CAH HAH CL6 sing 214 n n CAJ HAJ CL6 sing 215 n n # _atom_sites.entry_id 8SG5 _atom_sites.fract_transf_matrix[1][1] 0.009603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000337 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 HEM A 1 601 601 HEM HEM . J 3 CL6 A 1 602 602 CL6 CL6 . K 3 CL6 A 1 603 603 CL6 CL6 . L 3 CL6 A 1 604 604 CL6 CL6 . M 4 CE9 A 1 605 605 CE9 CE9 . N 2 HEM B 1 601 601 HEM HEM . O 3 CL6 B 1 602 602 CL6 CL6 . P 3 CL6 B 1 603 603 CL6 CL6 . Q 3 CL6 B 1 604 604 CL6 CL6 . R 4 CE9 B 1 605 605 CE9 CE9 . S 2 HEM C 1 601 601 HEM HEM . T 3 CL6 C 1 602 602 CL6 CL6 . U 3 CL6 C 1 603 603 CL6 CL6 . V 3 CL6 C 1 604 604 CL6 CL6 . W 4 CE9 C 1 605 605 CE9 CE9 . X 2 HEM D 1 601 601 HEM HEM . Y 3 CL6 D 1 602 602 CL6 CL6 . Z 3 CL6 D 1 603 603 CL6 CL6 . AA 3 CL6 D 1 604 604 CL6 CL6 . BA 4 CE9 D 1 605 605 CE9 CE9 . CA 2 HEM E 1 601 601 HEM HEM . DA 3 CL6 E 1 602 602 CL6 CL6 . EA 3 CL6 E 1 603 603 CL6 CL6 . FA 3 CL6 E 1 604 604 CL6 CL6 . GA 4 CE9 E 1 605 605 CE9 CE9 . HA 2 HEM F 1 601 601 HEM HEM . IA 3 CL6 F 1 602 602 CL6 CL6 . JA 3 CL6 F 1 603 603 CL6 CL6 . KA 3 CL6 F 1 604 604 CL6 CL6 . LA 4 CE9 F 1 605 605 CE9 CE9 . MA 2 HEM G 1 601 601 HEM HEM . NA 3 CL6 G 1 602 602 CL6 CL6 . OA 3 CL6 G 1 603 603 CL6 CL6 . PA 3 CL6 G 1 604 604 CL6 CL6 . QA 4 CE9 G 1 605 605 CE9 CE9 . RA 2 HEM H 1 601 601 HEM HEM . SA 3 CL6 H 1 602 602 CL6 CL6 . TA 3 CL6 H 1 603 603 CL6 CL6 . UA 3 CL6 H 1 604 604 CL6 CL6 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CLAY CL6 . . . SA 3 52.164 -19.265 73.788 1 87.76 ? CLAY CL6 602 H 1 HETATM 2 C CAX CL6 . . . SA 3 50.659 -18.926 74.582 1 83.76 ? CAX CL6 602 H 1 HETATM 3 C CAV CL6 . . . SA 3 50.573 -19.26 75.922 1 83.36 ? CAV CL6 602 H 1 HETATM 4 C CAT CL6 . . . SA 3 49.407 -18.995 76.613 1 82.98 ? CAT CL6 602 H 1 HETATM 5 C CAS CL6 . . . SA 3 48.346 -18.407 75.972 1 82.43 ? CAS CL6 602 H 1 HETATM 6 C CAU CL6 . . . SA 3 48.436 -18.077 74.63 1 79.58 ? CAU CL6 602 H 1 HETATM 7 C CAW CL6 . . . SA 3 49.591 -18.33 73.901 1 81.75 ? CAW CL6 602 H 1 HETATM 8 C CAR CL6 . . . SA 3 49.663 -18.019 72.386 1 82.55 ? CAR CL6 602 H 1 HETATM 9 C CAC CL6 . . . SA 3 48.33 -17.51 71.792 1 84 ? CAC CL6 602 H 1 HETATM 10 C CAE CL6 . . . SA 3 47.912 -16.203 72.022 1 82.01 ? CAE CL6 602 H 1 HETATM 11 C CAF CL6 . . . SA 3 46.731 -15.73 71.474 1 78.82 ? CAF CL6 602 H 1 HETATM 12 C CAD CL6 . . . SA 3 45.95 -16.552 70.694 1 80.19 ? CAD CL6 602 H 1 HETATM 13 C CAB CL6 . . . SA 3 46.347 -17.848 70.459 1 80.41 ? CAB CL6 602 H 1 HETATM 14 C CAA CL6 . . . SA 3 47.527 -18.327 71.003 1 81.52 ? CAA CL6 602 H 1 HETATM 15 N NAO CL6 . . . SA 3 50.062 -19.3 71.692 1 83.4 ? NAO CL6 602 H 1 HETATM 16 C CAM CL6 . . . SA 3 51.012 -19.471 70.737 1 84.34 ? CAM CL6 602 H 1 HETATM 17 N NAN CL6 . . . SA 3 51.156 -20.726 70.378 1 87.82 ? NAN CL6 602 H 1 HETATM 18 C CAQ CL6 . . . SA 3 50.244 -21.411 71.136 1 87.73 ? CAQ CL6 602 H 1 HETATM 19 C CAP CL6 . . . SA 3 49.569 -20.563 71.943 1 85.27 ? CAP CL6 602 H 1 HETATM 20 C CAL CL6 . . . SA 3 50.679 -16.881 72.134 1 82.64 ? CAL CL6 602 H 1 HETATM 21 C CAK CL6 . . . SA 3 51.299 -16.238 73.2 1 82.85 ? CAK CL6 602 H 1 HETATM 22 C CAI CL6 . . . SA 3 52.156 -15.171 72.984 1 83.11 ? CAI CL6 602 H 1 HETATM 23 C CAG CL6 . . . SA 3 52.408 -14.732 71.706 1 81.59 ? CAG CL6 602 H 1 HETATM 24 C CAH CL6 . . . SA 3 51.805 -15.356 70.638 1 81.81 ? CAH CL6 602 H 1 HETATM 25 C CAJ CL6 . . . SA 3 50.946 -16.422 70.847 1 80.09 ? CAJ CL6 602 H 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 25 #