data_8SG5 # _model_server_result.job_id 9MMAy_HySaz-NIcxurBxzw _model_server_result.datetime_utc '2024-11-28 17:10:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":605}' # _entry.id 8SG5 # _exptl.entry_id 8SG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.807 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DODECYL NONA ETHYLENE GLYCOL ETHER' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.01 _cell.angle_gamma 90 _cell.entry_id 8SG5 _cell.length_a 104.131 _cell.length_b 200.679 _cell.length_c 110.819 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 PISA monomeric 1 author_and_software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I,J,K,L,M 1 1 B,N,O,P,Q,R 2 1 C,S,T,U,V,W 3 1 D,X,Y,Z,AA,BA 4 1 E,CA,DA,EA,FA,GA 5 1 F,HA,IA,JA,KA,LA 6 1 G,MA,NA,OA,PA,QA 7 1 H,RA,SA,TA,UA 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 R N N ? 4 W N N ? 4 BA N N ? 4 GA N N ? 4 LA N N ? 4 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 420 A CYS 441 1_555 I FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 I FE HEM . A HEM 601 1_555 J NAN CL6 . A CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc3 B SG CYS 420 B CYS 441 1_555 N FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 N FE HEM . B HEM 601 1_555 O NAN CL6 . B CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc5 C SG CYS 420 C CYS 441 1_555 S FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc6 S FE HEM . C HEM 601 1_555 T NAN CL6 . C CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc7 D SG CYS 420 D CYS 441 1_555 X FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc8 X FE HEM . D HEM 601 1_555 Y NAN CL6 . D CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc9 E SG CYS 420 E CYS 441 1_555 CA FE HEM . E HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc10 CA FE HEM . E HEM 601 1_555 DA NAN CL6 . E CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc11 F SG CYS 420 F CYS 441 1_555 HA FE HEM . F HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 HA FE HEM . F HEM 601 1_555 IA NAN CL6 . F CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc13 G SG CYS 420 G CYS 441 1_555 MA FE HEM . G HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc14 MA FE HEM . G HEM 601 1_555 NA NAN CL6 . G CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc15 H SG CYS 420 H CYS 441 1_555 RA FE HEM . H HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc16 RA FE HEM . H HEM 601 1_555 SA NAN CL6 . H CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? # _chem_comp.formula 'C30 H62 O10' _chem_comp.formula_weight 582.807 _chem_comp.id CE9 _chem_comp.mon_nstd_flag . _chem_comp.name 'DODECYL NONA ETHYLENE GLYCOL ETHER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms POLYDOCANOL;THESIT # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CE9 sing 70 n n C1 H11 CE9 sing 71 n n C1 H12 CE9 sing 72 n n C1 H13 CE9 sing 73 n n C2 C3 CE9 sing 74 n n C2 H21 CE9 sing 75 n n C2 H22 CE9 sing 76 n n C3 C4 CE9 sing 77 n n C3 H31 CE9 sing 78 n n C3 H32 CE9 sing 79 n n C4 C5 CE9 sing 80 n n C4 H41 CE9 sing 81 n n C4 H42 CE9 sing 82 n n C5 C6 CE9 sing 83 n n C5 H51 CE9 sing 84 n n C5 H52 CE9 sing 85 n n C6 C7 CE9 sing 86 n n C6 H61 CE9 sing 87 n n C6 H62 CE9 sing 88 n n C7 C8 CE9 sing 89 n n C7 H71 CE9 sing 90 n n C7 H72 CE9 sing 91 n n C8 C9 CE9 sing 92 n n C8 H81 CE9 sing 93 n n C8 H82 CE9 sing 94 n n C9 C10 CE9 sing 95 n n C9 H91 CE9 sing 96 n n C9 H92 CE9 sing 97 n n C10 C11 CE9 sing 98 n n C10 H101 CE9 sing 99 n n C10 H102 CE9 sing 100 n n C11 C12 CE9 sing 101 n n C11 H111 CE9 sing 102 n n C11 H112 CE9 sing 103 n n C12 O13 CE9 sing 104 n n C12 H121 CE9 sing 105 n n C12 H122 CE9 sing 106 n n O13 C14 CE9 sing 107 n n C14 C15 CE9 sing 108 n n C14 H141 CE9 sing 109 n n C14 H142 CE9 sing 110 n n C15 O16 CE9 sing 111 n n C15 H151 CE9 sing 112 n n C15 H152 CE9 sing 113 n n O16 C17 CE9 sing 114 n n C17 C18 CE9 sing 115 n n C17 H171 CE9 sing 116 n n C17 H172 CE9 sing 117 n n C18 O19 CE9 sing 118 n n C18 H181 CE9 sing 119 n n C18 H182 CE9 sing 120 n n O19 C20 CE9 sing 121 n n C20 C21 CE9 sing 122 n n C20 H201 CE9 sing 123 n n C20 H202 CE9 sing 124 n n C21 O22 CE9 sing 125 n n C21 H211 CE9 sing 126 n n C21 H212 CE9 sing 127 n n O22 C23 CE9 sing 128 n n C23 C24 CE9 sing 129 n n C23 H231 CE9 sing 130 n n C23 H232 CE9 sing 131 n n C24 O25 CE9 sing 132 n n C24 H241 CE9 sing 133 n n C24 H242 CE9 sing 134 n n O25 C26 CE9 sing 135 n n C26 C27 CE9 sing 136 n n C26 H261 CE9 sing 137 n n C26 H262 CE9 sing 138 n n C27 O28 CE9 sing 139 n n C27 H271 CE9 sing 140 n n C27 H272 CE9 sing 141 n n O28 C29 CE9 sing 142 n n C29 C30 CE9 sing 143 n n C29 H291 CE9 sing 144 n n C29 H292 CE9 sing 145 n n C30 O31 CE9 sing 146 n n C30 H301 CE9 sing 147 n n C30 H302 CE9 sing 148 n n O31 C32 CE9 sing 149 n n C32 C33 CE9 sing 150 n n C32 H321 CE9 sing 151 n n C32 H322 CE9 sing 152 n n C33 O34 CE9 sing 153 n n C33 H331 CE9 sing 154 n n C33 H332 CE9 sing 155 n n O34 C35 CE9 sing 156 n n C35 C36 CE9 sing 157 n n C35 H351 CE9 sing 158 n n C35 H352 CE9 sing 159 n n C36 O37 CE9 sing 160 n n C36 H361 CE9 sing 161 n n C36 H362 CE9 sing 162 n n O37 C38 CE9 sing 163 n n C38 C39 CE9 sing 164 n n C38 H381 CE9 sing 165 n n C38 H382 CE9 sing 166 n n C39 OXT CE9 sing 167 n n C39 H391 CE9 sing 168 n n C39 H392 CE9 sing 169 n n OXT HXT CE9 sing 170 n n # _atom_sites.entry_id 8SG5 _atom_sites.fract_transf_matrix[1][1] 0.009603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000337 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 HEM A 1 601 601 HEM HEM . J 3 CL6 A 1 602 602 CL6 CL6 . K 3 CL6 A 1 603 603 CL6 CL6 . L 3 CL6 A 1 604 604 CL6 CL6 . M 4 CE9 A 1 605 605 CE9 CE9 . N 2 HEM B 1 601 601 HEM HEM . O 3 CL6 B 1 602 602 CL6 CL6 . P 3 CL6 B 1 603 603 CL6 CL6 . Q 3 CL6 B 1 604 604 CL6 CL6 . R 4 CE9 B 1 605 605 CE9 CE9 . S 2 HEM C 1 601 601 HEM HEM . T 3 CL6 C 1 602 602 CL6 CL6 . U 3 CL6 C 1 603 603 CL6 CL6 . V 3 CL6 C 1 604 604 CL6 CL6 . W 4 CE9 C 1 605 605 CE9 CE9 . X 2 HEM D 1 601 601 HEM HEM . Y 3 CL6 D 1 602 602 CL6 CL6 . Z 3 CL6 D 1 603 603 CL6 CL6 . AA 3 CL6 D 1 604 604 CL6 CL6 . BA 4 CE9 D 1 605 605 CE9 CE9 . CA 2 HEM E 1 601 601 HEM HEM . DA 3 CL6 E 1 602 602 CL6 CL6 . EA 3 CL6 E 1 603 603 CL6 CL6 . FA 3 CL6 E 1 604 604 CL6 CL6 . GA 4 CE9 E 1 605 605 CE9 CE9 . HA 2 HEM F 1 601 601 HEM HEM . IA 3 CL6 F 1 602 602 CL6 CL6 . JA 3 CL6 F 1 603 603 CL6 CL6 . KA 3 CL6 F 1 604 604 CL6 CL6 . LA 4 CE9 F 1 605 605 CE9 CE9 . MA 2 HEM G 1 601 601 HEM HEM . NA 3 CL6 G 1 602 602 CL6 CL6 . OA 3 CL6 G 1 603 603 CL6 CL6 . PA 3 CL6 G 1 604 604 CL6 CL6 . QA 4 CE9 G 1 605 605 CE9 CE9 . RA 2 HEM H 1 601 601 HEM HEM . SA 3 CL6 H 1 602 602 CL6 CL6 . TA 3 CL6 H 1 603 603 CL6 CL6 . UA 3 CL6 H 1 604 604 CL6 CL6 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CE9 . . . R 4 -11.828 -0.829 33.768 1 66.13 ? C1 CE9 605 B 1 HETATM 2 C C2 CE9 . . . R 4 -12.091 -0.938 32.288 1 64.35 ? C2 CE9 605 B 1 HETATM 3 C C3 CE9 . . . R 4 -12.695 -2.27 31.884 1 63.44 ? C3 CE9 605 B 1 HETATM 4 C C4 CE9 . . . R 4 -13.007 -2.353 30.401 1 69.07 ? C4 CE9 605 B 1 HETATM 5 C C5 CE9 . . . R 4 -13.554 -3.694 29.94 1 67.74 ? C5 CE9 605 B 1 HETATM 6 C C6 CE9 . . . R 4 -13.996 -3.678 28.486 1 68.24 ? C6 CE9 605 B 1 HETATM 7 C C7 CE9 . . . R 4 -14.585 -4.984 27.98 1 67.42 ? C7 CE9 605 B 1 HETATM 8 C C8 CE9 . . . R 4 -15.549 -4.783 26.825 1 72.4 ? C8 CE9 605 B 1 HETATM 9 C C9 CE9 . . . R 4 -16.01 -6.062 26.152 1 80.73 ? C9 CE9 605 B 1 HETATM 10 C C10 CE9 . . . R 4 -17.151 -5.837 25.172 1 83.31 ? C10 CE9 605 B 1 HETATM 11 C C11 CE9 . . . R 4 -17.165 -6.793 23.992 1 75.92 ? C11 CE9 605 B 1 HETATM 12 C C12 CE9 . . . R 4 -17.116 -6.075 22.667 1 73.79 ? C12 CE9 605 B 1 HETATM 13 O O13 CE9 . . . R 4 -17.362 -6.999 21.618 1 75.25 ? O13 CE9 605 B 1 HETATM 14 C C14 CE9 . . . R 4 -16.932 -6.524 20.352 1 68.4 ? C14 CE9 605 B 1 HETATM 15 C C15 CE9 . . . R 4 -15.547 -7.003 20.081 1 64.96 ? C15 CE9 605 B 1 HETATM 16 O O16 CE9 . . . R 4 -15.565 -8.374 19.721 1 66.15 ? O16 CE9 605 B 1 HETATM 17 C C17 CE9 . . . R 4 -14.518 -8.709 18.825 1 65.5 ? C17 CE9 605 B 1 HETATM 18 C C18 CE9 . . . R 4 -14.115 -10.133 19.021 1 65.9 ? C18 CE9 605 B 1 HETATM 19 O O19 CE9 . . . R 4 -15.267 -10.941 19.208 1 67.46 ? O19 CE9 605 B 1 HETATM 20 C C20 CE9 . . . R 4 -15.704 -11.562 18.009 1 65.43 ? C20 CE9 605 B 1 HETATM 21 C C21 CE9 . . . R 4 -15.956 -13.02 18.23 1 65.47 ? C21 CE9 605 B 1 HETATM 22 O O22 CE9 . . . R 4 -16.968 -13.221 19.208 1 69.19 ? O22 CE9 605 B 1 HETATM 23 C C23 CE9 . . . R 4 -18.111 -12.394 19.036 1 70.87 ? C23 CE9 605 B 1 HETATM 24 C C24 CE9 . . . R 4 -19.311 -13.044 19.645 1 81.81 ? C24 CE9 605 B 1 HETATM 25 O O25 CE9 . . . R 4 -19.055 -13.377 21.002 1 83.16 ? O25 CE9 605 B 1 HETATM 26 C C26 CE9 . . . R 4 -18.96 -14.778 21.217 1 86.07 ? C26 CE9 605 B 1 HETATM 27 C C27 CE9 . . . R 4 -18.694 -15.062 22.659 1 86.81 ? C27 CE9 605 B 1 HETATM 28 O O28 CE9 . . . R 4 -18.985 -16.422 22.944 1 95.28 ? O28 CE9 605 B 1 HETATM 29 C C29 CE9 . . . R 4 -18.047 -17.321 22.368 1 93.5 ? C29 CE9 605 B 1 HETATM 30 C C30 CE9 . . . R 4 -18.697 -18.638 22.077 1 97.28 ? C30 CE9 605 B 1 HETATM 31 O O31 CE9 . . . R 4 -18.702 -19.452 23.243 1 101.57 ? O31 CE9 605 B 1 HETATM 32 C C32 CE9 . . . R 4 -17.714 -20.473 23.221 1 90.12 ? C32 CE9 605 B 1 HETATM 33 C C33 CE9 . . . R 4 -16.63 -20.157 24.202 1 83.09 ? C33 CE9 605 B 1 HETATM 34 O O34 CE9 . . . R 4 -15.697 -21.227 24.263 1 75.98 ? O34 CE9 605 B 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #