data_8SHY
#
_model_server_result.job_id            E6ZkxhSCABZXYMZrYrscEQ 
_model_server_result.datetime_utc      '2024-10-15 12:22:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8shy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    8SHY 
#
_exptl.entry_id    8SHY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.59 
_cell.angle_gamma         90 
_cell.entry_id            8SHY 
_cell.length_a            88.112 
_cell.length_b            60.968 
_cell.length_c            104.352 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SHY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 235 C HIS 378 1_555 B ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc2 A SG CYS 241 C CYS 384 1_555 B ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc3 A SG CYS 242 C CYS 385 1_555 B ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc4 A SG CYS 249 C CYS 392 1_555 B ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8SHY 
_atom_sites.fract_transf_matrix[1][1]    0.011349 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000911 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016402 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009614 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN C 1 601 2 ZN ZN . 
C 3 ATP C 1 602 601 ATP ATP . 
D 4 HOH C 1 701 68 HOH HOH . 
D 4 HOH C 2 702 36 HOH HOH . 
D 4 HOH C 3 703 105 HOH HOH . 
D 4 HOH C 4 704 92 HOH HOH . 
D 4 HOH C 5 705 130 HOH HOH . 
D 4 HOH C 6 706 54 HOH HOH . 
D 4 HOH C 7 707 110 HOH HOH . 
D 4 HOH C 8 708 28 HOH HOH . 
D 4 HOH C 9 709 1 HOH HOH . 
D 4 HOH C 10 710 70 HOH HOH . 
D 4 HOH C 11 711 33 HOH HOH . 
D 4 HOH C 12 712 25 HOH HOH . 
D 4 HOH C 13 713 4 HOH HOH . 
D 4 HOH C 14 714 15 HOH HOH . 
D 4 HOH C 15 715 62 HOH HOH . 
D 4 HOH C 16 716 56 HOH HOH . 
D 4 HOH C 17 717 18 HOH HOH . 
D 4 HOH C 18 718 75 HOH HOH . 
D 4 HOH C 19 719 8 HOH HOH . 
D 4 HOH C 20 720 10 HOH HOH . 
D 4 HOH C 21 721 73 HOH HOH . 
D 4 HOH C 22 722 124 HOH HOH . 
D 4 HOH C 23 723 84 HOH HOH . 
D 4 HOH C 24 724 38 HOH HOH . 
D 4 HOH C 25 725 60 HOH HOH . 
D 4 HOH C 26 726 42 HOH HOH . 
D 4 HOH C 27 727 41 HOH HOH . 
D 4 HOH C 28 728 7 HOH HOH . 
D 4 HOH C 29 729 108 HOH HOH . 
D 4 HOH C 30 730 24 HOH HOH . 
D 4 HOH C 31 731 5 HOH HOH . 
D 4 HOH C 32 732 65 HOH HOH . 
D 4 HOH C 33 733 125 HOH HOH . 
D 4 HOH C 34 734 102 HOH HOH . 
D 4 HOH C 35 735 127 HOH HOH . 
D 4 HOH C 36 736 48 HOH HOH . 
D 4 HOH C 37 737 123 HOH HOH . 
D 4 HOH C 38 738 107 HOH HOH . 
D 4 HOH C 39 739 30 HOH HOH . 
D 4 HOH C 40 740 71 HOH HOH . 
D 4 HOH C 41 741 9 HOH HOH . 
D 4 HOH C 42 742 90 HOH HOH . 
D 4 HOH C 43 743 21 HOH HOH . 
D 4 HOH C 44 744 2 HOH HOH . 
D 4 HOH C 45 745 46 HOH HOH . 
D 4 HOH C 46 746 64 HOH HOH . 
D 4 HOH C 47 747 57 HOH HOH . 
D 4 HOH C 48 748 86 HOH HOH . 
D 4 HOH C 49 749 53 HOH HOH . 
D 4 HOH C 50 750 79 HOH HOH . 
D 4 HOH C 51 751 117 HOH HOH . 
D 4 HOH C 52 752 83 HOH HOH . 
D 4 HOH C 53 753 96 HOH HOH . 
D 4 HOH C 54 754 104 HOH HOH . 
D 4 HOH C 55 755 26 HOH HOH . 
D 4 HOH C 56 756 99 HOH HOH . 
D 4 HOH C 57 757 52 HOH HOH . 
D 4 HOH C 58 758 11 HOH HOH . 
D 4 HOH C 59 759 27 HOH HOH . 
D 4 HOH C 60 760 116 HOH HOH . 
D 4 HOH C 61 761 13 HOH HOH . 
D 4 HOH C 62 762 59 HOH HOH . 
D 4 HOH C 63 763 67 HOH HOH . 
D 4 HOH C 64 764 3 HOH HOH . 
D 4 HOH C 65 765 113 HOH HOH . 
D 4 HOH C 66 766 89 HOH HOH . 
D 4 HOH C 67 767 43 HOH HOH . 
D 4 HOH C 68 768 50 HOH HOH . 
D 4 HOH C 69 769 78 HOH HOH . 
D 4 HOH C 70 770 128 HOH HOH . 
D 4 HOH C 71 771 91 HOH HOH . 
D 4 HOH C 72 772 23 HOH HOH . 
D 4 HOH C 73 773 63 HOH HOH . 
D 4 HOH C 74 774 120 HOH HOH . 
D 4 HOH C 75 775 112 HOH HOH . 
D 4 HOH C 76 776 118 HOH HOH . 
D 4 HOH C 77 777 109 HOH HOH . 
D 4 HOH C 78 778 129 HOH HOH . 
D 4 HOH C 79 779 45 HOH HOH . 
D 4 HOH C 80 780 76 HOH HOH . 
D 4 HOH C 81 781 100 HOH HOH . 
D 4 HOH C 82 782 97 HOH HOH . 
D 4 HOH C 83 783 31 HOH HOH . 
D 4 HOH C 84 784 51 HOH HOH . 
D 4 HOH C 85 785 14 HOH HOH . 
D 4 HOH C 86 786 106 HOH HOH . 
D 4 HOH C 87 787 82 HOH HOH . 
D 4 HOH C 88 788 66 HOH HOH . 
D 4 HOH C 89 789 77 HOH HOH . 
D 4 HOH C 90 790 12 HOH HOH . 
D 4 HOH C 91 791 119 HOH HOH . 
D 4 HOH C 92 792 74 HOH HOH . 
D 4 HOH C 93 793 87 HOH HOH . 
D 4 HOH C 94 794 72 HOH HOH . 
D 4 HOH C 95 795 32 HOH HOH . 
D 4 HOH C 96 796 6 HOH HOH . 
D 4 HOH C 97 797 16 HOH HOH . 
D 4 HOH C 98 798 29 HOH HOH . 
D 4 HOH C 99 799 126 HOH HOH . 
D 4 HOH C 100 800 93 HOH HOH . 
D 4 HOH C 101 801 20 HOH HOH . 
D 4 HOH C 102 802 49 HOH HOH . 
D 4 HOH C 103 803 80 HOH HOH . 
D 4 HOH C 104 804 95 HOH HOH . 
D 4 HOH C 105 805 35 HOH HOH . 
D 4 HOH C 106 806 22 HOH HOH . 
D 4 HOH C 107 807 58 HOH HOH . 
D 4 HOH C 108 808 17 HOH HOH . 
D 4 HOH C 109 809 40 HOH HOH . 
D 4 HOH C 110 810 34 HOH HOH . 
D 4 HOH C 111 811 88 HOH HOH . 
D 4 HOH C 112 812 114 HOH HOH . 
D 4 HOH C 113 813 37 HOH HOH . 
D 4 HOH C 114 814 39 HOH HOH . 
D 4 HOH C 115 815 69 HOH HOH . 
D 4 HOH C 116 816 81 HOH HOH . 
D 4 HOH C 117 817 103 HOH HOH . 
D 4 HOH C 118 818 121 HOH HOH . 
D 4 HOH C 119 819 85 HOH HOH . 
D 4 HOH C 120 820 19 HOH HOH . 
D 4 HOH C 121 821 94 HOH HOH . 
D 4 HOH C 122 822 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 3 1.529 -2.812 26.609 1 75.93 ? PG ATP 602 C 1 
HETATM 2 O O1G ATP . . . C 3 0.904 -3.699 25.583 1 69.54 ? O1G ATP 602 C 1 
HETATM 3 O O2G ATP . . . C 3 2.189 -3.575 27.765 1 60.64 ? O2G ATP 602 C 1 
HETATM 4 O O3G ATP . . . C 3 2.548 -1.806 26.041 1 77.69 ? O3G ATP 602 C 1 
HETATM 5 P PB ATP . . . C 3 -0.742 -0.869 26.9 1 137.79 ? PB ATP 602 C 1 
HETATM 6 O O1B ATP . . . C 3 -0.656 -0.482 25.473 1 108.76 ? O1B ATP 602 C 1 
HETATM 7 O O2B ATP . . . C 3 -2.074 -1.476 27.359 1 140.11 ? O2B ATP 602 C 1 
HETATM 8 O O3B ATP . . . C 3 0.412 -1.898 27.302 1 108.74 ? O3B ATP 602 C 1 
HETATM 9 P PA ATP . . . C 3 0.097 0.569 29.357 1 134.5 ? PA ATP 602 C 1 
HETATM 10 O O1A ATP . . . C 3 1.253 1.49 29.416 1 109.75 ? O1A ATP 602 C 1 
HETATM 11 O O2A ATP . . . C 3 0.336 -0.819 29.944 1 126.98 ? O2A ATP 602 C 1 
HETATM 12 O O3A ATP . . . C 3 -0.427 0.361 27.861 1 145.61 ? O3A ATP 602 C 1 
HETATM 13 O O5' ATP . . . C 3 -1.178 1.145 30.086 1 153.79 ? O5' ATP 602 C 1 
HETATM 14 C C5' ATP . . . C 3 -2.216 0.267 30.571 1 138.01 ? C5' ATP 602 C 1 
HETATM 15 C C4' ATP . . . C 3 -3.522 1.017 30.588 1 135.32 ? C4' ATP 602 C 1 
HETATM 16 O O4' ATP . . . C 3 -4.036 1.109 29.248 1 134.29 ? O4' ATP 602 C 1 
HETATM 17 C C3' ATP . . . C 3 -4.63 0.348 31.402 1 119.07 ? C3' ATP 602 C 1 
HETATM 18 O O3' ATP . . . C 3 -4.708 0.89 32.716 1 92.63 ? O3' ATP 602 C 1 
HETATM 19 C C2' ATP . . . C 3 -5.912 0.63 30.597 1 123.54 ? C2' ATP 602 C 1 
HETATM 20 O O2' ATP . . . C 3 -6.851 1.407 31.332 1 113.63 ? O2' ATP 602 C 1 
HETATM 21 C C1' ATP . . . C 3 -5.416 1.373 29.348 1 117.82 ? C1' ATP 602 C 1 
HETATM 22 N N9 ATP . . . C 3 -6.06 0.947 28.106 1 88 ? N9 ATP 602 C 1 
HETATM 23 C C8 ATP . . . C 3 -5.441 0.629 26.923 1 85.95 ? C8 ATP 602 C 1 
HETATM 24 N N7 ATP . . . C 3 -6.265 0.276 25.966 1 75.97 ? N7 ATP 602 C 1 
HETATM 25 C C5 ATP . . . C 3 -7.516 0.367 26.558 1 70.32 ? C5 ATP 602 C 1 
HETATM 26 C C6 ATP . . . C 3 -8.817 0.123 26.075 1 67.08 ? C6 ATP 602 C 1 
HETATM 27 N N6 ATP . . . C 3 -9.086 -0.281 24.828 1 68.21 ? N6 ATP 602 C 1 
HETATM 28 N N1 ATP . . . C 3 -9.851 0.311 26.928 1 68.36 ? N1 ATP 602 C 1 
HETATM 29 C C2 ATP . . . C 3 -9.591 0.713 28.176 1 60.04 ? C2 ATP 602 C 1 
HETATM 30 N N3 ATP . . . C 3 -8.411 0.972 28.741 1 61.7 ? N3 ATP 602 C 1 
HETATM 31 C C4 ATP . . . C 3 -7.406 0.78 27.878 1 70.85 ? C4 ATP 602 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#