data_8SID # _model_server_result.job_id 8CBad05a7AOXqzozVIMz1g _model_server_result.datetime_utc '2024-10-25 20:25:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 8SID # _exptl.entry_id 8SID _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SID _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SID _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 O N N ? 9 U N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 7 4 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 7 5 4 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 7 6 5 MAN MAN C1 O1 . O2 HO2 . sing 8 ? 7 7 3 MAN BMA C1 O1 . O6 HO6 . sing 9 ? 7 8 7 MAN MAN C1 O1 . O6 HO6 . sing 10 ? 7 9 8 MAN MAN C1 O1 . O2 HO2 . sing 11 ? 7 10 7 MAN MAN C1 O1 . O3 HO3 . sing 12 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n J NAG 1 F 1 NAG F 1 NAG 6 n J NAG 2 F 2 NAG F 2 NAG 6 n J BMA 3 F 3 BMA F 3 BMA 7 n K NAG 1 G 1 NAG G 1 NAG 7 n K NAG 2 G 2 NAG G 2 NAG 7 n K BMA 3 G 3 BMA G 3 BMA 7 n K MAN 4 G 4 MAN G 4 MAN 7 n K MAN 5 G 5 MAN G 5 MAN 7 n K MAN 6 G 6 MAN G 6 MAN 7 n K MAN 7 G 7 MAN G 7 MAN 7 n K MAN 8 G 8 MAN G 8 MAN 7 n K MAN 9 G 9 MAN G 9 MAN 7 n K MAN 10 G 10 MAN G 10 MAN 6 n L NAG 1 H 1 NAG H 1 NAG 6 n L NAG 2 H 2 NAG H 2 NAG 6 n L BMA 3 H 3 BMA H 3 BMA 6 n M NAG 1 M 1 NAG M 1 NAG 6 n M NAG 2 M 2 NAG M 2 NAG 6 n M BMA 3 M 3 BMA M 3 BMA 8 n N NAG 1 N 1 NAG N 1 NAG 8 n N NAG 2 N 2 NAG N 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 136 A CYS 136 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 139 B CYS 139 1_555 B SG CYS 153 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 C SG CYS 136 C CYS 136 1_555 C SG CYS 150 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 D SG CYS 139 D CYS 139 1_555 D SG CYS 153 D CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 E SG CYS 188 E CYS 151 1_555 E SG CYS 202 E CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 F SG CYS 23 I CYS 23 1_555 F SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 G SG CYS 22 J CYS 22 1_555 G SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 H SG CYS 23 L CYS 23 1_555 H SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 I SG CYS 22 K CYS 22 1_555 I SG CYS 96 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 80 A ASN 80 1_555 O C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 B ND2 ASN 111 B ASN 111 1_555 K C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 C ND2 ASN 80 C ASN 80 1_555 U C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 C ND2 ASN 149 C ASN 149 1_555 L C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 D ND2 ASN 111 D ASN 111 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 E ND2 ASN 245 E ASN 208 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 J O4 NAG . F NAG 1 1_555 J C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale8 J O4 NAG . F NAG 2 1_555 J C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 K O4 NAG . G NAG 1 1_555 K C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 K O4 NAG . G NAG 2 1_555 K C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale11 K O3 BMA . G BMA 3 1_555 K C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 K O6 BMA . G BMA 3 1_555 K C1 MAN . G MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 K O2 MAN . G MAN 4 1_555 K C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale14 K O2 MAN . G MAN 5 1_555 K C1 MAN . G MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale15 K O6 MAN . G MAN 7 1_555 K C1 MAN . G MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale16 K O3 MAN . G MAN 7 1_555 K C1 MAN . G MAN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale17 K O2 MAN . G MAN 8 1_555 K C1 MAN . G MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale18 L O4 NAG . H NAG 1 1_555 L C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale19 L O4 NAG . H NAG 2 1_555 L C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale20 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale21 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale22 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 298 n n C1 O1 NAG sing 299 n n C1 O5 NAG sing 300 n n C1 H1 NAG sing 301 n n C2 C3 NAG sing 302 n n C2 N2 NAG sing 303 n n C2 H2 NAG sing 304 n n C3 C4 NAG sing 305 n n C3 O3 NAG sing 306 n n C3 H3 NAG sing 307 n n C4 C5 NAG sing 308 n n C4 O4 NAG sing 309 n n C4 H4 NAG sing 310 n n C5 C6 NAG sing 311 n n C5 O5 NAG sing 312 n n C5 H5 NAG sing 313 n n C6 O6 NAG sing 314 n n C6 H61 NAG sing 315 n n C6 H62 NAG sing 316 n n C7 C8 NAG sing 317 n n C7 N2 NAG sing 318 n n C7 O7 NAG doub 319 n n C8 H81 NAG sing 320 n n C8 H82 NAG sing 321 n n C8 H83 NAG sing 322 n n N2 HN2 NAG sing 323 n n O1 HO1 NAG sing 324 n n O3 HO3 NAG sing 325 n n O4 HO4 NAG sing 326 n n O6 HO6 NAG sing 327 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8SID _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 9 NAG A 1 401 404 NAG NAG . P 10 ABU A 1 402 405 ABU ABU . Q 11 ZWY A 1 403 401 ZWY LIG . R 12 PTY B 1 401 506 PTY PTY . S 12 PTY B 1 402 807 PTY PTY . T 12 PTY B 1 403 907 PTY PTY . U 9 NAG C 1 401 404 NAG NAG . V 10 ABU C 1 402 405 ABU ABU . W 13 Q3G C 1 403 406 Q3G Q3G . X 14 POV D 1 401 605 POV POV . Y 12 PTY D 1 402 606 PTY PTY . Z 12 PTY D 1 403 607 PTY PTY . AA 12 PTY D 1 404 407 PTY PTY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . O 9 113.273 143.359 185.722 1 82.02 ? C1 NAG 401 A 1 HETATM 2 C C2 NAG . . . O 9 113.303 142.483 186.966 1 81.61 ? C2 NAG 401 A 1 HETATM 3 C C3 NAG . . . O 9 113.106 143.338 188.211 1 82.07 ? C3 NAG 401 A 1 HETATM 4 C C4 NAG . . . O 9 114.131 144.462 188.247 1 84.63 ? C4 NAG 401 A 1 HETATM 5 C C5 NAG . . . O 9 114.092 145.255 186.945 1 84.62 ? C5 NAG 401 A 1 HETATM 6 C C6 NAG . . . O 9 115.183 146.295 186.854 1 85.18 ? C6 NAG 401 A 1 HETATM 7 C C7 NAG . . . O 9 112.455 140.235 187.449 1 83.09 ? C7 NAG 401 A 1 HETATM 8 C C8 NAG . . . O 9 111.311 139.281 187.292 1 82.52 ? C8 NAG 401 A 1 HETATM 9 N N2 NAG . . . O 9 112.291 141.442 186.9 1 81.54 ? N2 NAG 401 A 1 HETATM 10 O O3 NAG . . . O 9 113.237 142.522 189.369 1 85.81 ? O3 NAG 401 A 1 HETATM 11 O O4 NAG . . . O 9 113.854 145.34 189.332 1 84.54 ? O4 NAG 401 A 1 HETATM 12 O O5 NAG . . . O 9 114.27 144.373 185.828 1 83 ? O5 NAG 401 A 1 HETATM 13 O O6 NAG . . . O 9 116.076 146.208 187.955 1 88.5 ? O6 NAG 401 A 1 HETATM 14 O O7 NAG . . . O 9 113.483 139.924 188.04 1 81.25 ? O7 NAG 401 A 1 HETATM 15 H H2 NAG . . . O 9 114.181 142.062 187.023 1 81.13 ? H2 NAG 401 A 1 HETATM 16 H H3 NAG . . . O 9 112.21 143.724 188.193 1 81.14 ? H3 NAG 401 A 1 HETATM 17 H H4 NAG . . . O 9 115.02 144.078 188.363 1 81.76 ? H4 NAG 401 A 1 HETATM 18 H H5 NAG . . . O 9 113.224 145.696 186.867 1 81.48 ? H5 NAG 401 A 1 HETATM 19 H H61 NAG . . . O 9 114.776 147.183 186.843 1 81.69 ? H61 NAG 401 A 1 HETATM 20 H H62 NAG . . . O 9 115.682 146.163 186.026 1 81.15 ? H62 NAG 401 A 1 HETATM 21 H H81 NAG . . . O 9 111.53 138.436 187.727 1 81.76 ? H81 NAG 401 A 1 HETATM 22 H H82 NAG . . . O 9 111.151 139.125 186.343 1 80.89 ? H82 NAG 401 A 1 HETATM 23 H H83 NAG . . . O 9 110.51 139.661 187.701 1 81.25 ? H83 NAG 401 A 1 HETATM 24 H HN2 NAG . . . O 9 111.507 141.623 186.472 1 80.58 ? HN2 NAG 401 A 1 HETATM 25 H HO3 NAG . . . O 9 112.592 142.722 189.946 1 82.09 ? HO3 NAG 401 A 1 HETATM 26 H HO4 NAG . . . O 9 114.317 145.084 190.045 1 81.75 ? HO4 NAG 401 A 1 HETATM 27 H HO6 NAG . . . O 9 116.642 145.535 187.824 1 82.28 ? HO6 NAG 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 99 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #