data_8SIP # _model_server_result.job_id xqJm0L05FoXGrPmHRrw8-A _model_server_result.datetime_utc '2024-12-26 10:17:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8SIP # _exptl.entry_id 8SIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description INOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 83.84 _cell.angle_beta 88.82 _cell.angle_gamma 89.68 _cell.entry_id 8SIP _cell.length_a 39.817 _cell.length_b 49.09 _cell.length_c 57.385 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 146 H CYS 146 1_555 A SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 94 L CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf4 B SG CYS 139 L CYS 139 1_555 B SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C10 H12 N4 O5' _chem_comp.formula_weight 268.226 _chem_comp.id NOS _chem_comp.mon_nstd_flag . _chem_comp.name INOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NOS sing 237 n n N1 C6 NOS sing 238 n n C2 N3 NOS doub 239 n n O6 C6 NOS doub 240 n n C6 C5 NOS sing 241 n n N3 C4 NOS sing 242 n n O2' C2' NOS sing 243 n n C5 C4 NOS doub 244 n y C5 N7 NOS sing 245 n y C4 N9 NOS sing 246 n y N7 C8 NOS doub 247 n y N9 C8 NOS sing 248 n y N9 C1' NOS sing 249 n n C1' C2' NOS sing 250 n n C1' O4' NOS sing 251 n n C2' C3' NOS sing 252 n n O4' C4' NOS sing 253 n n C3' O3' NOS sing 254 n n C3' C4' NOS sing 255 n n C4' C5' NOS sing 256 n n C5' O5' NOS sing 257 n n C2 H1 NOS sing 258 n n N1 H2 NOS sing 259 n n C8 H3 NOS sing 260 n n C5' H4 NOS sing 261 n n C5' H5 NOS sing 262 n n O5' H6 NOS sing 263 n n C4' H7 NOS sing 264 n n C1' H8 NOS sing 265 n n C2' H9 NOS sing 266 n n O2' H10 NOS sing 267 n n C3' H11 NOS sing 268 n n O3' H12 NOS sing 269 n n # _atom_sites.entry_id 8SIP _atom_sites.fract_transf_matrix[1][1] 0.025115 _atom_sites.fract_transf_matrix[1][2] -0.00014 _atom_sites.fract_transf_matrix[1][3] -0.000505 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020371 _atom_sites.fract_transf_matrix[2][3] -0.002197 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NOS H 1 301 301 NOS NOS . D 4 HOH H 1 401 318 HOH HOH . D 4 HOH H 2 402 393 HOH HOH . D 4 HOH H 3 403 412 HOH HOH . D 4 HOH H 4 404 371 HOH HOH . D 4 HOH H 5 405 333 HOH HOH . D 4 HOH H 6 406 383 HOH HOH . D 4 HOH H 7 407 339 HOH HOH . D 4 HOH H 8 408 335 HOH HOH . D 4 HOH H 9 409 311 HOH HOH . D 4 HOH H 10 410 332 HOH HOH . D 4 HOH H 11 411 314 HOH HOH . D 4 HOH H 12 412 410 HOH HOH . D 4 HOH H 13 413 346 HOH HOH . D 4 HOH H 14 414 347 HOH HOH . D 4 HOH H 15 415 396 HOH HOH . D 4 HOH H 16 416 328 HOH HOH . D 4 HOH H 17 417 397 HOH HOH . D 4 HOH H 18 418 320 HOH HOH . D 4 HOH H 19 419 365 HOH HOH . D 4 HOH H 20 420 348 HOH HOH . D 4 HOH H 21 421 342 HOH HOH . D 4 HOH H 22 422 345 HOH HOH . D 4 HOH H 23 423 408 HOH HOH . D 4 HOH H 24 424 369 HOH HOH . D 4 HOH H 25 425 405 HOH HOH . D 4 HOH H 26 426 409 HOH HOH . D 4 HOH H 27 427 307 HOH HOH . D 4 HOH H 28 428 326 HOH HOH . D 4 HOH H 29 429 312 HOH HOH . D 4 HOH H 30 430 331 HOH HOH . D 4 HOH H 31 431 384 HOH HOH . D 4 HOH H 32 432 319 HOH HOH . D 4 HOH H 33 433 308 HOH HOH . D 4 HOH H 34 434 315 HOH HOH . D 4 HOH H 35 435 336 HOH HOH . D 4 HOH H 36 436 303 HOH HOH . D 4 HOH H 37 437 390 HOH HOH . D 4 HOH H 38 438 367 HOH HOH . D 4 HOH H 39 439 375 HOH HOH . D 4 HOH H 40 440 309 HOH HOH . D 4 HOH H 41 441 376 HOH HOH . D 4 HOH H 42 442 321 HOH HOH . D 4 HOH H 43 443 387 HOH HOH . D 4 HOH H 44 444 317 HOH HOH . D 4 HOH H 45 445 343 HOH HOH . D 4 HOH H 46 446 381 HOH HOH . D 4 HOH H 47 447 351 HOH HOH . D 4 HOH H 48 448 304 HOH HOH . D 4 HOH H 49 449 413 HOH HOH . D 4 HOH H 50 450 306 HOH HOH . D 4 HOH H 51 451 338 HOH HOH . D 4 HOH H 52 452 356 HOH HOH . D 4 HOH H 53 453 305 HOH HOH . D 4 HOH H 54 454 403 HOH HOH . D 4 HOH H 55 455 380 HOH HOH . D 4 HOH H 56 456 324 HOH HOH . D 4 HOH H 57 457 329 HOH HOH . D 4 HOH H 58 458 373 HOH HOH . D 4 HOH H 59 459 392 HOH HOH . D 4 HOH H 60 460 364 HOH HOH . D 4 HOH H 61 461 361 HOH HOH . D 4 HOH H 62 462 368 HOH HOH . D 4 HOH H 63 463 323 HOH HOH . D 4 HOH H 64 464 401 HOH HOH . D 4 HOH H 65 465 355 HOH HOH . D 4 HOH H 66 466 362 HOH HOH . D 4 HOH H 67 467 302 HOH HOH . D 4 HOH H 68 468 313 HOH HOH . D 4 HOH H 69 469 349 HOH HOH . D 4 HOH H 70 470 354 HOH HOH . D 4 HOH H 71 471 414 HOH HOH . D 4 HOH H 72 472 402 HOH HOH . D 4 HOH H 73 473 325 HOH HOH . D 4 HOH H 74 474 358 HOH HOH . D 4 HOH H 75 475 370 HOH HOH . D 4 HOH H 76 476 360 HOH HOH . D 4 HOH H 77 477 352 HOH HOH . D 4 HOH H 78 478 330 HOH HOH . D 4 HOH H 79 479 322 HOH HOH . D 4 HOH H 80 480 357 HOH HOH . D 4 HOH H 81 481 388 HOH HOH . D 4 HOH H 82 482 406 HOH HOH . D 4 HOH H 83 483 399 HOH HOH . D 4 HOH H 84 484 340 HOH HOH . D 4 HOH H 85 485 378 HOH HOH . D 4 HOH H 86 486 386 HOH HOH . D 4 HOH H 87 487 372 HOH HOH . D 4 HOH H 88 488 385 HOH HOH . D 4 HOH H 89 489 394 HOH HOH . D 4 HOH H 90 490 377 HOH HOH . D 4 HOH H 91 491 374 HOH HOH . D 4 HOH H 92 492 391 HOH HOH . D 4 HOH H 93 493 379 HOH HOH . D 4 HOH H 94 494 316 HOH HOH . D 4 HOH H 95 495 337 HOH HOH . D 4 HOH H 96 496 400 HOH HOH . D 4 HOH H 97 497 411 HOH HOH . D 4 HOH H 98 498 415 HOH HOH . D 4 HOH H 99 499 416 HOH HOH . D 4 HOH H 100 500 389 HOH HOH . D 4 HOH H 101 501 327 HOH HOH . D 4 HOH H 102 502 344 HOH HOH . D 4 HOH H 103 503 353 HOH HOH . D 4 HOH H 104 504 363 HOH HOH . D 4 HOH H 105 505 398 HOH HOH . D 4 HOH H 106 506 366 HOH HOH . D 4 HOH H 107 507 350 HOH HOH . D 4 HOH H 108 508 407 HOH HOH . D 4 HOH H 109 509 395 HOH HOH . D 4 HOH H 110 510 418 HOH HOH . D 4 HOH H 111 511 359 HOH HOH . D 4 HOH H 112 512 417 HOH HOH . D 4 HOH H 113 513 404 HOH HOH . D 4 HOH H 114 514 310 HOH HOH . D 4 HOH H 115 515 341 HOH HOH . D 4 HOH H 116 516 334 HOH HOH . D 4 HOH H 117 517 382 HOH HOH . E 4 HOH L 1 301 255 HOH HOH . E 4 HOH L 2 302 269 HOH HOH . E 4 HOH L 3 303 327 HOH HOH . E 4 HOH L 4 304 291 HOH HOH . E 4 HOH L 5 305 300 HOH HOH . E 4 HOH L 6 306 233 HOH HOH . E 4 HOH L 7 307 304 HOH HOH . E 4 HOH L 8 308 281 HOH HOH . E 4 HOH L 9 309 263 HOH HOH . E 4 HOH L 10 310 333 HOH HOH . E 4 HOH L 11 311 245 HOH HOH . E 4 HOH L 12 312 248 HOH HOH . E 4 HOH L 13 313 318 HOH HOH . E 4 HOH L 14 314 227 HOH HOH . E 4 HOH L 15 315 314 HOH HOH . E 4 HOH L 16 316 230 HOH HOH . E 4 HOH L 17 317 331 HOH HOH . E 4 HOH L 18 318 294 HOH HOH . E 4 HOH L 19 319 219 HOH HOH . E 4 HOH L 20 320 237 HOH HOH . E 4 HOH L 21 321 265 HOH HOH . E 4 HOH L 22 322 225 HOH HOH . E 4 HOH L 23 323 220 HOH HOH . E 4 HOH L 24 324 299 HOH HOH . E 4 HOH L 25 325 241 HOH HOH . E 4 HOH L 26 326 224 HOH HOH . E 4 HOH L 27 327 288 HOH HOH . E 4 HOH L 28 328 266 HOH HOH . E 4 HOH L 29 329 261 HOH HOH . E 4 HOH L 30 330 295 HOH HOH . E 4 HOH L 31 331 239 HOH HOH . E 4 HOH L 32 332 221 HOH HOH . E 4 HOH L 33 333 260 HOH HOH . E 4 HOH L 34 334 313 HOH HOH . E 4 HOH L 35 335 231 HOH HOH . E 4 HOH L 36 336 282 HOH HOH . E 4 HOH L 37 337 325 HOH HOH . E 4 HOH L 38 338 236 HOH HOH . E 4 HOH L 39 339 264 HOH HOH . E 4 HOH L 40 340 326 HOH HOH . E 4 HOH L 41 341 223 HOH HOH . E 4 HOH L 42 342 321 HOH HOH . E 4 HOH L 43 343 330 HOH HOH . E 4 HOH L 44 344 332 HOH HOH . E 4 HOH L 45 345 222 HOH HOH . E 4 HOH L 46 346 243 HOH HOH . E 4 HOH L 47 347 226 HOH HOH . E 4 HOH L 48 348 268 HOH HOH . E 4 HOH L 49 349 244 HOH HOH . E 4 HOH L 50 350 298 HOH HOH . E 4 HOH L 51 351 228 HOH HOH . E 4 HOH L 52 352 247 HOH HOH . E 4 HOH L 53 353 312 HOH HOH . E 4 HOH L 54 354 250 HOH HOH . E 4 HOH L 55 355 301 HOH HOH . E 4 HOH L 56 356 246 HOH HOH . E 4 HOH L 57 357 302 HOH HOH . E 4 HOH L 58 358 307 HOH HOH . E 4 HOH L 59 359 218 HOH HOH . E 4 HOH L 60 360 274 HOH HOH . E 4 HOH L 61 361 316 HOH HOH . E 4 HOH L 62 362 254 HOH HOH . E 4 HOH L 63 363 229 HOH HOH . E 4 HOH L 64 364 262 HOH HOH . E 4 HOH L 65 365 259 HOH HOH . E 4 HOH L 66 366 290 HOH HOH . E 4 HOH L 67 367 315 HOH HOH . E 4 HOH L 68 368 324 HOH HOH . E 4 HOH L 69 369 319 HOH HOH . E 4 HOH L 70 370 249 HOH HOH . E 4 HOH L 71 371 251 HOH HOH . E 4 HOH L 72 372 276 HOH HOH . E 4 HOH L 73 373 278 HOH HOH . E 4 HOH L 74 374 252 HOH HOH . E 4 HOH L 75 375 258 HOH HOH . E 4 HOH L 76 376 328 HOH HOH . E 4 HOH L 77 377 311 HOH HOH . E 4 HOH L 78 378 306 HOH HOH . E 4 HOH L 79 379 232 HOH HOH . E 4 HOH L 80 380 242 HOH HOH . E 4 HOH L 81 381 303 HOH HOH . E 4 HOH L 82 382 240 HOH HOH . E 4 HOH L 83 383 238 HOH HOH . E 4 HOH L 84 384 329 HOH HOH . E 4 HOH L 85 385 235 HOH HOH . E 4 HOH L 86 386 297 HOH HOH . E 4 HOH L 87 387 272 HOH HOH . E 4 HOH L 88 388 275 HOH HOH . E 4 HOH L 89 389 267 HOH HOH . E 4 HOH L 90 390 277 HOH HOH . E 4 HOH L 91 391 320 HOH HOH . E 4 HOH L 92 392 257 HOH HOH . E 4 HOH L 93 393 217 HOH HOH . E 4 HOH L 94 394 309 HOH HOH . E 4 HOH L 95 395 289 HOH HOH . E 4 HOH L 96 396 293 HOH HOH . E 4 HOH L 97 397 273 HOH HOH . E 4 HOH L 98 398 280 HOH HOH . E 4 HOH L 99 399 317 HOH HOH . E 4 HOH L 100 400 271 HOH HOH . E 4 HOH L 101 401 334 HOH HOH . E 4 HOH L 102 402 305 HOH HOH . E 4 HOH L 103 403 234 HOH HOH . E 4 HOH L 104 404 323 HOH HOH . E 4 HOH L 105 405 256 HOH HOH . E 4 HOH L 106 406 285 HOH HOH . E 4 HOH L 107 407 279 HOH HOH . E 4 HOH L 108 408 310 HOH HOH . E 4 HOH L 109 409 308 HOH HOH . E 4 HOH L 110 410 286 HOH HOH . E 4 HOH L 111 411 296 HOH HOH . E 4 HOH L 112 412 284 HOH HOH . E 4 HOH L 113 413 270 HOH HOH . E 4 HOH L 114 414 322 HOH HOH . E 4 HOH L 115 415 292 HOH HOH . E 4 HOH L 116 416 287 HOH HOH . E 4 HOH L 117 417 283 HOH HOH . E 4 HOH L 118 418 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 NOS . . . C 3 0.459 5.732 15.328 1 31.9 ? N9 NOS 301 H 1 HETATM 2 C C4 NOS . . . C 3 -0.018 6.175 14.152 1 23.97 ? C4 NOS 301 H 1 HETATM 3 N N3 NOS . . . C 3 -1.307 6.205 13.796 1 24.7 ? N3 NOS 301 H 1 HETATM 4 C C2 NOS . . . C 3 -1.469 6.692 12.605 1 25.57 ? C2 NOS 301 H 1 HETATM 5 N N1 NOS . . . C 3 -0.463 7.123 11.808 1 21.2 ? N1 NOS 301 H 1 HETATM 6 C C6 NOS . . . C 3 0.893 7.113 12.121 1 24.52 ? C6 NOS 301 H 1 HETATM 7 O O6 NOS . . . C 3 1.733 7.521 11.345 1 26.67 ? O6 NOS 301 H 1 HETATM 8 C C5 NOS . . . C 3 1.082 6.576 13.436 1 26.09 ? C5 NOS 301 H 1 HETATM 9 N N7 NOS . . . C 3 2.209 6.383 14.165 1 29.22 ? N7 NOS 301 H 1 HETATM 10 C C8 NOS . . . C 3 1.803 5.879 15.297 1 26.78 ? C8 NOS 301 H 1 HETATM 11 C C5' NOS . . . C 3 -1.999 7.108 18.992 1 41.4 ? C5' NOS 301 H 1 HETATM 12 O O5' NOS . . . C 3 -3.022 7.791 18.261 1 33.45 ? O5' NOS 301 H 1 HETATM 13 C C4' NOS . . . C 3 -1.533 5.882 18.243 1 40.64 ? C4' NOS 301 H 1 HETATM 14 O O4' NOS . . . C 3 -1.142 6.27 16.928 1 38.09 ? O4' NOS 301 H 1 HETATM 15 C C1' NOS . . . C 3 -0.417 5.205 16.369 1 35.18 ? C1' NOS 301 H 1 HETATM 16 C C2' NOS . . . C 3 0.296 4.494 17.529 1 39.37 ? C2' NOS 301 H 1 HETATM 17 O O2' NOS . . . C 3 0.091 3.094 17.442 1 45.75 ? O2' NOS 301 H 1 HETATM 18 C C3' NOS . . . C 3 -0.316 5.148 18.79 1 37.01 ? C3' NOS 301 H 1 HETATM 19 O O3' NOS . . . C 3 -0.743 4.117 19.682 1 49.86 ? O3' NOS 301 H 1 # _model_server_stats.io_time_ms 146 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #